RLG00000007049

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001545
Physical Location & Seq
Reverse (-)
13047436 .. 13048628
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007049

Sequence Viewer

Length: 1020 bp
ATGCATCTAGGAGGATTCATTTGGCTCTCCTACATACCGCGGACACAGTTTTTGGATCAGTTGAATGAATGTGGTTGCCTGGAGGCTTCAATTGTTAGCGGTCATGGAGGATTAAGTGTGGACAAGTGCGGGTTCCTGCTTGTATATCAGCACCAGGAGGAAGAGCTTAAGCAGACCATAATGCTTTGCAAGATCTCTTTGTCGGATATTTATAATGAAAAGCAAGACCATGAAGCAGCTGCAGCTAGTAGAATATCTGCGGGGGACTCTCAGGGTGCTGTTACTGGTATTGCAATTGCTAGCAGGGATCAGGAGTTTGACCGTGCCTCGACATATAATTCTTGCTTCCCTCCAGATGATATTGTAGAGTGGTTCGGGCATCACAGCAATGGTCCCTCAGTAAAAATCCCGTTACCACCACATCTATACAGGGAGGGTACTAATTGGATAGGATTGGTTATGTGTGCATACTTTTCAGTCCTCGACCATTCAATTGCCAACCTTGATCAAGATCCTGATATACCTCACCACCTTACATGTTATTTGGAAACTGATACAGGTAGCCTGGACCATTTCCATTCCTACATGACCACCAACGAAGAATTCAAATGGCTGCATCTAGGAGGATTCATATGGGTTTCCTACCTACCACGAAGGTCTTTGATTTTGGATCATCAGTTGAATGAGTGCATCCACCTACAGGCTTCAATTGGAAGTGACCGCCCAAGCTTCGGGGTGCTCAAGTGTGGGCTTTGTCTTCTATATGGAAATGATGAGCAAGAGTTTAAGAAGACCATTATGCATTGCAGAACCTCGTTGTCTGATCTTCGTAACAGAGAACAGAAGCCCGTTGTCGGGGGTGAGACCAGAGCATCTAGTAATGATATGGTCACTGGGGCTCACGGTGAAAGATTAAAAAGAATCAAAATTGATACAAAGGGCTCCAATAATGGACTAGCTCGTACGTGGAAAGGGAATTCACTACTATCAATTGCGCCTTACGGGAGCACCATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

340

Amino Acids

37.8

Weight (kDa)

5.83

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 117 - 258 2.8e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccII CGCG 1 cut(s) 40
AciI CCGC 6 cut(s) 38, 40, 99, 129, 260, 721
AclWI GGATC 4 cut(s) 63, 315, 506, 678
AcsI RAATTY 2 cut(s) 602, 976
AfaI GTAC 2 cut(s) 439, 964
AfiI CCNNNNNNNGG 4 cut(s) 700, 731, 854, 855
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 6 cut(s) 64, 90, 492, 607, 682, 708
AjnI CCWGG 3 cut(s) 78, 153, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 5 cut(s) 166, 239, 245, 729, 959
AluI AGCT 5 cut(s) 166, 239, 245, 729, 959
Alw21I GWGCWC 2 cut(s) 741, 1010
Alw26I GTCTC 1 cut(s) 857
AlwI GGATC 4 cut(s) 63, 315, 506, 678
ApeKI GCWGC 4 cut(s) 236, 239, 242, 613
ApoI RAATTY 2 cut(s) 602, 976
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 392, 568
AsuHPI GGTGA 3 cut(s) 518, 872, 917
AsuNHI GCTAGC 1 cut(s) 299
AvaII GGWCC 2 cut(s) 392, 568
BanII GRGCYC 2 cut(s) 901, 944
BbsI GAAGAC 2 cut(s) 749, 797
Bbv12I GWGCWC 2 cut(s) 741, 1010
BbvI GCAGC 4 cut(s) 226, 248, 254, 600
BciT130I CCWGG 3 cut(s) 80, 155, 566
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 857
BfaI CTAG 6 cut(s) 8, 246, 300, 620, 876, 956
BfmI CTRYAG 2 cut(s) 240, 698
BfrI CTTAAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 192
BisI GCNGC 4 cut(s) 237, 240, 243, 614
BlsI GCNGC 4 cut(s) 238, 241, 244, 615
Bme1390I CCNGG 3 cut(s) 80, 155, 566
Bme18I GGWCC 2 cut(s) 392, 568
BmgT120I GGNCC 2 cut(s) 392, 568
BmiI GGNNCC 3 cut(s) 134, 394, 943
BmrFI CCNGG 3 cut(s) 80, 155, 566
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 5 cut(s) 13, 388, 625, 699, 881
BmtI GCTAGC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 903
BpiI GAAGAC 2 cut(s) 749, 797
BpmI CTGGAG 2 cut(s) 101, 336
BpuEI CTTGAG 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 4 cut(s) 700, 731, 854, 855
Bse1I ACTGG 2 cut(s) 289, 898
Bse3DI GCAATG 3 cut(s) 394, 802, 1011
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 3 cut(s) 80, 155, 566
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 690
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 4 cut(s) 700, 731, 854, 855
BseMI GCAATG 3 cut(s) 394, 802, 1011
BseMII CTCAG 2 cut(s) 284, 411
BseNI ACTGG 2 cut(s) 289, 898
BseXI GCAGC 4 cut(s) 226, 248, 254, 600
Bsh1236I CGCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 741, 1010
BsiWI CGTACG 1 cut(s) 962
BslFI GGGAC 2 cut(s) 278, 378
BslI CCNNNNNNNGG 4 cut(s) 700, 731, 854, 855
BsmAI GTCTC 1 cut(s) 857
BsmFI GGGAC 2 cut(s) 278, 378
Bso31I GGTCTC 1 cut(s) 857
Bsp1286I GDGCHC 4 cut(s) 741, 901, 944, 1010
Bsp143I GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
BspACI CCGC 6 cut(s) 38, 40, 99, 129, 260, 721
BspCNI CTCAG 2 cut(s) 283, 410
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 134, 394, 943
BspMAI CTGCAG 1 cut(s) 244
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 4 cut(s) 63, 315, 506, 678
BspQI GCTCTTC 1 cut(s) 156
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 857
BsrDI GCAATG 3 cut(s) 394, 802, 1011
BsrI ACTGG 2 cut(s) 289, 898
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
Bst2UI CCWGG 3 cut(s) 80, 155, 566
Bst4CI ACNGT 3 cut(s) 48, 323, 905
Bst6I CTCTTC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 966
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 270, 397, 1017
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 690
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 7 cut(s) 58, 195, 310, 508, 514, 673, 826
BstMAI GTCTC 1 cut(s) 857
BstMBI GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 3 cut(s) 80, 155, 566
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 3 cut(s) 78, 153, 564
BstSFI CTRYAG 2 cut(s) 240, 698
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 4 cut(s) 226, 248, 254, 600
BstV2I GAAGAC 2 cut(s) 749, 797
BstX2I RGATCY 2 cut(s) 192, 511
BstYI RGATCY 2 cut(s) 192, 511
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 690
BtsIMutI CAGTG 1 cut(s) 891
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 392, 568
Cfr42I CCGCGG 1 cut(s) 41
Csp6I GTAC 2 cut(s) 438, 963
CviAII CATG 4 cut(s) 104, 230, 537, 586
CviQI GTAC 2 cut(s) 438, 963
DdeI CTNAG 3 cut(s) 270, 397, 1017
DpnI GATC 7 cut(s) 57, 194, 309, 507, 513, 672, 825
DpnII GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco24I GRGCYC 2 cut(s) 901, 944
Eco31I GGTCTC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 392, 568
EcoRI GAATTC 2 cut(s) 602, 976
EcoRII CCWGG 3 cut(s) 78, 153, 564
EcoT22I ATGCAT 2 cut(s) 6, 804
EcoT38I GRGCYC 2 cut(s) 901, 944
FaeI CATG 4 cut(s) 107, 233, 540, 589
FaqI GGGAC 2 cut(s) 278, 378
FatI CATG 4 cut(s) 103, 229, 536, 585
FauI CCCGC 2 cut(s) 122, 253
FauNDI CATATG 1 cut(s) 632
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 4 cut(s) 237, 240, 243, 614
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 2 cut(s) 901, 944
Fsp4HI GCNGC 4 cut(s) 237, 240, 243, 614
FspBI CTAG 6 cut(s) 8, 246, 300, 620, 876, 956
GlaI GCGC 1 cut(s) 996
GluI GCNGC 4 cut(s) 237, 240, 243, 614
GsuI CTGGAG 2 cut(s) 101, 336
HhaI GCGC 1 cut(s) 997
Hin1II CATG 4 cut(s) 107, 233, 540, 589
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 4 cut(s) 15, 266, 627, 921
HphI GGTGA 3 cut(s) 518, 872, 917
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 205, 823
Hpy188III TCNNGA 4 cut(s) 311, 353, 509, 515
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 3 cut(s) 48, 323, 905
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 9 cut(s) 4, 189, 242, 293, 467, 616, 690, 802, 807
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 3 cut(s) 270, 397, 1017
HpySE526I ACGT 1 cut(s) 965
Hsp92II CATG 4 cut(s) 107, 233, 540, 589
HspAI GCGC 1 cut(s) 995
Ksp22I TGATCA 1 cut(s) 505
KspI CCGCGG 1 cut(s) 41
Kzo9I GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 947, 1005
Lsp1109I GCAGC 4 cut(s) 226, 248, 254, 600
LweI GCATC 5 cut(s) 13, 388, 625, 699, 881
MaeI CTAG 6 cut(s) 8, 246, 300, 620, 876, 956
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 5 cut(s) 280, 411, 716, 830, 889
MalI GATC 7 cut(s) 57, 194, 309, 507, 513, 672, 825
MboI GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
MboII GAAGA 5 cut(s) 173, 611, 749, 802, 818
MfeI CAATTG 5 cut(s) 90, 294, 492, 708, 990
MflI RGATCY 2 cut(s) 192, 511
MhlI GDGCHC 4 cut(s) 741, 901, 944, 1010
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 183
Mph1103I ATGCAT 2 cut(s) 6, 804
MseI TTAA 4 cut(s) 113, 168, 786, 914
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 40, 239
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 80, 155, 566
MunI CAATTG 5 cut(s) 90, 294, 492, 708, 990
MvaI CCWGG 3 cut(s) 80, 155, 566
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeI CATATG 1 cut(s) 632
NdeII GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 4 cut(s) 107, 233, 540, 589
NlaIV GGNNCC 3 cut(s) 134, 394, 943
NmuCI GTSAC 2 cut(s) 716, 889
NsiI ATGCAT 2 cut(s) 6, 804
NspI RCATGY 1 cut(s) 540
PciI ACATGT 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 15, 627, 921
Pfl23II CGTACG 1 cut(s) 962
PkrI GCNGC 4 cut(s) 238, 241, 244, 615
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Ppu21I YACGTR 1 cut(s) 966
PscI ACATGT 1 cut(s) 536
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 78, 153, 564
PspGI CCWGG 3 cut(s) 78, 153, 564
PspLI CGTACG 1 cut(s) 962
PspN4I GGNNCC 3 cut(s) 134, 394, 943
PspPI GGNCC 2 cut(s) 392, 568
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 192, 511
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 439, 964
RsaNI GTAC 2 cut(s) 438, 963
RseI CAYNNNNRTG 1 cut(s) 387
SacII CCGCGG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 4 cut(s) 113, 168, 786, 914
SatI GCNGC 4 cut(s) 237, 240, 243, 614
Sau3AI GATC 7 cut(s) 55, 192, 307, 505, 511, 670, 823
Sau96I GGNCC 2 cut(s) 392, 568
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 80, 155, 566
SduI GDGCHC 4 cut(s) 741, 901, 944, 1010
SfaNI GCATC 5 cut(s) 13, 388, 625, 699, 881
SfcI CTRYAG 2 cut(s) 240, 698
Sfr303I CCGCGG 1 cut(s) 41
SgrBI CCGCGG 1 cut(s) 41
SinI GGWCC 2 cut(s) 392, 568
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 2 cut(s) 167, 740
SmoI CTYRAG 2 cut(s) 167, 740
SsiI CCGC 6 cut(s) 38, 40, 99, 129, 260, 721
SspMI CTAG 6 cut(s) 8, 246, 300, 620, 876, 956
StyD4I CCNGG 3 cut(s) 78, 153, 564
TaaI ACNGT 3 cut(s) 48, 323, 905
TaiI ACGT 1 cut(s) 968
TaqI TCGA 2 cut(s) 329, 483
TfiI GAWTC 3 cut(s) 15, 627, 921
Tru1I TTAA 4 cut(s) 113, 168, 786, 914
Tru9I TTAA 4 cut(s) 113, 168, 786, 914
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 716, 889
TseI GCWGC 4 cut(s) 236, 239, 242, 613
Tsp45I GTSAC 2 cut(s) 716, 889
TspDTI ATGAA 5 cut(s) 7, 81, 231, 246, 619
TspRI CASTG 1 cut(s) 898
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 392, 568
XapI RAATTY 2 cut(s) 602, 976
XceI RCATGY 1 cut(s) 540
XspI CTAG 6 cut(s) 8, 246, 300, 620, 876, 956
Zsp2I ATGCAT 2 cut(s) 6, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.