resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 20 - 186 | 8.2e-51 | TIR domain |
| TIR_2 | PF13676 | 23 - 135 | 3.3e-14 | TIR domain |
| NB-ARC | PF00931 | 196 - 363 | 1.4e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 413 - 482 | 9.5e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 592 - 691 | 6.4e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 614 - 700 | 1.2e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 663 - 740 | 5.7e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 781 - 861 | 1e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 940 - 1079 | 5.4e-06 | C-JID domain |
| C-JID | PF20160 | 1480 - 1630 | 3.2e-06 | C-JID domain |
| C-JID | PF20160 | 1902 - 2046 | 7.6e-08 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 974, 3303 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 6175 |
| Acc16I | TGCGCA | 2 cut(s) | 1569, 6098 |
| Acc36I | ACCTGC | 1 cut(s) | 3554 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1337, 1760, 1898 |
| AccI | GTMKAC | 4 cut(s) | 3256, 3975, 4041, 5302 |
| AccII | CGCG | 7 cut(s) | 2772, 3278, 3865, 4580, 4765, 4767, 5389 |
| AccIII | TCCGGA | 1 cut(s) | 3670 |
| AcuI | CTGAAG | 7 cut(s) | 645, 1229, 1672, 2127, 2628, 4203, 4916 |
| AdeI | CACNNNGTG | 1 cut(s) | 3339 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 54, 662, 1337, 1760, 1898, 2615, 4344, 6284 |
| AflII | CTTAAG | 2 cut(s) | 2201, 5516 |
| AflIII | ACRYGT | 3 cut(s) | 2019, 4578, 5196 |
| AhlI | ACTAGT | 3 cut(s) | 1294, 4088, 5600 |
| AjiI | CACGTC | 2 cut(s) | 270, 4885 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 584, 616, 5324, 5356, 5951, 5983 |
| AleI | CACNNNNGTG | 1 cut(s) | 2602 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2403, 2435, 2712, 2744 |
| Alw21I | GWGCWC | 4 cut(s) | 2267, 3871, 4578, 4705 |
| Alw44I | GTGCAC | 2 cut(s) | 3867, 4574 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1898, 2347, 5044 |
| Ama87I | CYCGRG | 3 cut(s) | 247, 4489, 4706 |
| Aor13HI | TCCGGA | 1 cut(s) | 3670 |
| AoxI | GGCC | 6 cut(s) | 13, 763, 1984, 5125, 5247, 5749 |
| ApaLI | GTGCAC | 2 cut(s) | 3867, 4574 |
| ApeKI | GCWGC | 8 cut(s) | 370, 1464, 1771, 1774, 3716, 5591, 5855, 6222 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 674, 706, 4768, 4800, 5657, 5689 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1076, 4715, 5937, 5966 |
| AspLEI | GCGC | 3 cut(s) | 1570, 4767, 6099 |
| AsuC2I | CCSGG | 2 cut(s) | 3317, 3474 |
| AsuII | TTCGAA | 2 cut(s) | 364, 2742 |
| AsuNHI | GCTAGC | 1 cut(s) | 3911 |
| AvaI | CYCGRG | 3 cut(s) | 247, 4489, 4706 |
| AvaII | GGWCC | 7 cut(s) | 1648, 3095, 3280, 3353, 3964, 6274, 6299 |
| BaeGI | GKGCMC | 3 cut(s) | 3240, 3871, 4578 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3310, 3343, 3782, 3815 |
| BamHI | GGATCC | 1 cut(s) | 5875 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2836, 2868, 3639, 3671 |
| BbsI | GAAGAC | 4 cut(s) | 2115, 2694, 5796, 6155 |
| Bbv12I | GWGCWC | 4 cut(s) | 2267, 3871, 4578, 4705 |
| BbvI | GCAGC | 8 cut(s) | 382, 1476, 1783, 1786, 3703, 5603, 5842, 6234 |
| BceAI | ACGGC | 3 cut(s) | 3069, 3250, 5752 |
| BciVI | GTATCC | 3 cut(s) | 2722, 4369, 6119 |
| BclI | TGATCA | 6 cut(s) | 2233, 2274, 3391, 3628, 4237, 5626 |
| BcnI | CCSGG | 2 cut(s) | 3317, 3474 |
| BcuI | ACTAGT | 3 cut(s) | 1294, 4088, 5600 |
| BfmI | CTRYAG | 5 cut(s) | 912, 1066, 1769, 2542, 4018 |
| BfrI | CTTAAG | 2 cut(s) | 2201, 5516 |
| BfuAI | ACCTGC | 1 cut(s) | 3554 |
| BfuI | GTATCC | 3 cut(s) | 2722, 4369, 6119 |
| BglII | AGATCT | 1 cut(s) | 2386 |
| BmcAI | AGTACT | 4 cut(s) | 395, 3388, 3651, 5647 |
| Bme18I | GGWCC | 7 cut(s) | 1648, 3095, 3280, 3353, 3964, 6274, 6299 |
| BmeT110I | CYCGRG | 3 cut(s) | 247, 4489, 4706 |
| BmgBI | CACGTC | 2 cut(s) | 270, 4885 |
| BmiI | GGNNCC | 9 cut(s) | 351, 2834, 3965, 5250, 5641, 5752, 5877, 6276, 6301 |
| BmrI | ACTGGG | 1 cut(s) | 1908 |
| BmtI | GCTAGC | 1 cut(s) | 3915 |
| BmuI | ACTGGG | 1 cut(s) | 1908 |
| BoxI | GACNNNNGTC | 1 cut(s) | 748 |
| BpiI | GAAGAC | 4 cut(s) | 2115, 2694, 5796, 6155 |
| BpmI | CTGGAG | 7 cut(s) | 2859, 3245, 3717, 4569, 5234, 5450, 5901 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4626 |
| Bpu14I | TTCGAA | 2 cut(s) | 364, 2742 |
| BpuEI | CTTGAG | 7 cut(s) | 158, 450, 1727, 1868, 1901, 4262, 4818 |
| BpuMI | CCSGG | 2 cut(s) | 3317, 3474 |
| BsaAI | YACGTR | 2 cut(s) | 1595, 5197 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4620 |
| BsaI | GGTCTC | 2 cut(s) | 4971, 5516 |
| BsaJI | CCNNGG | 9 cut(s) | 9, 2614, 3060, 3276, 3617, 4441, 4686, 5251, 5680 |
| BsaWI | WCCGGW | 4 cut(s) | 196, 377, 3670, 3776 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 302, 332, 3577, 3607, 3715, 3745, 5295, 5325 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 54, 662, 1337, 1760, 1898, 2615, 4344, 6284 |
| Bse3DI | GCAATG | 7 cut(s) | 675, 1260, 1544, 2558, 2947, 3565, 4184 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4620 |
| BseAI | TCCGGA | 1 cut(s) | 3670 |
| BseDI | CCNNGG | 9 cut(s) | 9, 2614, 3060, 3276, 3617, 4441, 4686, 5251, 5680 |
| BseJI | GATNNNNATC | 1 cut(s) | 4620 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 54, 662, 1337, 1760, 1898, 2615, 4344, 6284 |
| BseMI | GCAATG | 7 cut(s) | 675, 1260, 1544, 2558, 2947, 3565, 4184 |
| BseMII | CTCAG | 8 cut(s) | 65, 495, 2373, 2528, 3503, 4384, 4449, 5769 |
| BseRI | GAGGAG | 3 cut(s) | 3657, 5684, 6152 |
| BseSI | GKGCMC | 3 cut(s) | 3240, 3871, 4578 |
| BseXI | GCAGC | 8 cut(s) | 382, 1476, 1783, 1786, 3703, 5603, 5842, 6234 |
| BseYI | CCCAGC | 1 cut(s) | 5851 |
| BsgI | GTGCAG | 2 cut(s) | 1713, 2580 |
| Bsh1236I | CGCG | 7 cut(s) | 2772, 3278, 3865, 4580, 4765, 4767, 5389 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5619 |
| BshFI | GGCC | 6 cut(s) | 15, 765, 1986, 5127, 5249, 5751 |
| BsiEI | CGRYCG | 1 cut(s) | 5619 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2267, 3871, 4578, 4705 |
| BsiHKCI | CYCGRG | 3 cut(s) | 247, 4489, 4706 |
| BsiSI | CCGG | 9 cut(s) | 197, 378, 918, 2731, 3317, 3474, 3671, 3777, 5485 |
| BslFI | GGGAC | 3 cut(s) | 1682, 3042, 3258 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 54, 662, 1337, 1760, 1898, 2615, 4344, 6284 |
| BsmBI | CGTCTC | 4 cut(s) | 153, 503, 4587, 5160 |
| BsmFI | GGGAC | 3 cut(s) | 1682, 3042, 3258 |
| BsmI | GAATGC | 5 cut(s) | 308, 1291, 2637, 5224, 5459 |
| BsnI | GGCC | 6 cut(s) | 15, 765, 1986, 5127, 5249, 5751 |
| Bso31I | GGTCTC | 2 cut(s) | 4971, 5516 |
| BsoBI | CYCGRG | 3 cut(s) | 247, 4489, 4706 |
| Bsp119I | TTCGAA | 2 cut(s) | 364, 2742 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2267, 3240, 3871, 4578, 4705 |
| Bsp13I | TCCGGA | 1 cut(s) | 3670 |
| Bsp1407I | TGTACA | 2 cut(s) | 1730, 3678 |
| Bsp19I | CCATGG | 1 cut(s) | 9 |
| BspANI | GGCC | 6 cut(s) | 15, 765, 1986, 5127, 5249, 5751 |
| BspCNI | CTCAG | 8 cut(s) | 66, 494, 2372, 2527, 3504, 4383, 4450, 5768 |
| BspEI | TCCGGA | 1 cut(s) | 3670 |
| BspFNI | CGCG | 7 cut(s) | 2772, 3278, 3865, 4580, 4765, 4767, 5389 |
| BspHI | TCATGA | 1 cut(s) | 5941 |
| BspLI | GGNNCC | 9 cut(s) | 351, 2834, 3965, 5250, 5641, 5752, 5877, 6276, 6301 |
| BspMAI | CTGCAG | 3 cut(s) | 1070, 1773, 4022 |
| BspMI | ACCTGC | 1 cut(s) | 3554 |
| BspOI | GCTAGC | 1 cut(s) | 3915 |
| BspQI | GCTCTTC | 4 cut(s) | 800, 1497, 2857, 5505 |
| BspT104I | TTCGAA | 2 cut(s) | 364, 2742 |
| BspTI | CTTAAG | 2 cut(s) | 2201, 5516 |
| BspTNI | GGTCTC | 2 cut(s) | 4971, 5516 |
| BsrDI | GCAATG | 7 cut(s) | 675, 1260, 1544, 2558, 2947, 3565, 4184 |
| BsrGI | TGTACA | 2 cut(s) | 1730, 3678 |
| BssECI | CCNNGG | 9 cut(s) | 9, 2614, 3060, 3276, 3617, 4441, 4686, 5251, 5680 |
| BssNAI | GTATAC | 1 cut(s) | 3976 |
| BssT1I | CCWWGG | 3 cut(s) | 9, 2614, 3617 |
| Bst1107I | GTATAC | 1 cut(s) | 3976 |
| Bst6I | CTCTTC | 7 cut(s) | 213, 800, 1497, 2857, 2970, 4375, 5505 |
| BstAFI | CTTAAG | 2 cut(s) | 2201, 5516 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3339 |
| BstAUI | TGTACA | 2 cut(s) | 1730, 3678 |
| BstBAI | YACGTR | 2 cut(s) | 1595, 5197 |
| BstBI | TTCGAA | 2 cut(s) | 364, 2742 |
| BstDSI | CCRYGG | 3 cut(s) | 9, 3276, 5680 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4342 |
| BstFNI | CGCG | 7 cut(s) | 2772, 3278, 3865, 4580, 4765, 4767, 5389 |
| BstHHI | GCGC | 3 cut(s) | 1570, 4767, 6099 |
| BstMCI | CGRYCG | 1 cut(s) | 5619 |
| BstNSI | RCATGY | 3 cut(s) | 1269, 3810, 4638 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 748 |
| BstSFI | CTRYAG | 5 cut(s) | 912, 1066, 1769, 2542, 4018 |
| BstSLI | GKGCMC | 3 cut(s) | 3240, 3871, 4578 |
| BstSNI | TACGTA | 1 cut(s) | 1595 |
| BstUI | CGCG | 7 cut(s) | 2772, 3278, 3865, 4580, 4765, 4767, 5389 |
| BstV1I | GCAGC | 8 cut(s) | 382, 1476, 1783, 1786, 3703, 5603, 5842, 6234 |
| BstV2I | GAAGAC | 4 cut(s) | 2115, 2694, 5796, 6155 |
| BstX2I | RGATCY | 3 cut(s) | 2386, 4942, 5875 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 3885, 4694, 5245, 6041 |
| BstYI | RGATCY | 3 cut(s) | 2386, 4942, 5875 |
| BstZ17I | GTATAC | 1 cut(s) | 3976 |
| BsuI | GTATCC | 3 cut(s) | 2722, 4369, 6119 |
| BsuRI | GGCC | 6 cut(s) | 15, 765, 1986, 5127, 5249, 5751 |
| BtgI | CCRYGG | 3 cut(s) | 9, 3276, 5680 |
| BtrI | CACGTC | 2 cut(s) | 270, 4885 |
| BtsI | GCAGTG | 2 cut(s) | 4705, 6160 |
| BveI | ACCTGC | 1 cut(s) | 3554 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1898, 2347, 5044 |
| CciI | TCATGA | 1 cut(s) | 5941 |
| CfoI | GCGC | 3 cut(s) | 1570, 4767, 6099 |
| Cfr42I | CCGCGG | 1 cut(s) | 3279 |
| CseI | GACGC | 3 cut(s) | 4569, 5177, 5801 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 5882, 5917, 6003, 6038 |
| DraI | TTTAAA | 1 cut(s) | 1584 |
| DraIII | CACNNNGTG | 1 cut(s) | 3339 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 6175 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 6175 |
| Eam1104I | CTCTTC | 7 cut(s) | 213, 800, 1497, 2857, 2970, 4375, 5505 |
| EarI | CTCTTC | 7 cut(s) | 213, 800, 1497, 2857, 2970, 4375, 5505 |
| EciI | GGCGGA | 1 cut(s) | 4023 |
| Eco105I | TACGTA | 1 cut(s) | 1595 |
| Eco130I | CCWWGG | 3 cut(s) | 9, 2614, 3617 |
| Eco147I | AGGCCT | 1 cut(s) | 765 |
| Eco31I | GGTCTC | 2 cut(s) | 4971, 5516 |
| Eco32I | GATATC | 1 cut(s) | 1249 |
| Eco47I | GGWCC | 7 cut(s) | 1648, 3095, 3280, 3353, 3964, 6274, 6299 |
| Eco57I | CTGAAG | 7 cut(s) | 645, 1229, 1672, 2127, 2628, 4203, 4916 |
| Eco88I | CYCGRG | 3 cut(s) | 247, 4489, 4706 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4342 |
| EcoO109I | RGGNCCY | 2 cut(s) | 6274, 6299 |
| EcoRI | GAATTC | 3 cut(s) | 2694, 2862, 5339 |
| EcoRV | GATATC | 1 cut(s) | 1249 |
| EcoT14I | CCWWGG | 3 cut(s) | 9, 2614, 3617 |
| EcoT22I | ATGCAT | 5 cut(s) | 308, 1228, 1291, 1401, 3812 |
| ErhI | CCWWGG | 3 cut(s) | 9, 2614, 3617 |
| Esp3I | CGTCTC | 4 cut(s) | 153, 503, 4587, 5160 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3329, 3361 |
| FaqI | GGGAC | 3 cut(s) | 1682, 3042, 3258 |
| FauI | CCCGC | 3 cut(s) | 104, 641, 3283 |
| FauNDI | CATATG | 2 cut(s) | 774, 1099 |
| FbaI | TGATCA | 6 cut(s) | 2233, 2274, 3391, 3628, 4237, 5626 |
| FblI | GTMKAC | 4 cut(s) | 3256, 3975, 4041, 5302 |
| FspAI | RTGCGCAY | 1 cut(s) | 1569 |
| FspI | TGCGCA | 2 cut(s) | 1569, 6098 |
| GlaI | GCGC | 3 cut(s) | 1569, 4766, 6098 |
| GsaI | CCCAGC | 1 cut(s) | 5855 |
| GsuI | CTGGAG | 7 cut(s) | 2859, 3245, 3717, 4569, 5234, 5450, 5901 |
| HaeIII | GGCC | 6 cut(s) | 15, 765, 1986, 5127, 5249, 5751 |
| HapII | CCGG | 9 cut(s) | 197, 378, 918, 2731, 3317, 3474, 3671, 3777, 5485 |
| HgaI | GACGC | 3 cut(s) | 4569, 5177, 5801 |
| HhaI | GCGC | 3 cut(s) | 1570, 4767, 6099 |
| Hin6I | GCGC | 3 cut(s) | 1568, 4765, 6097 |
| HinP1I | GCGC | 3 cut(s) | 1568, 4765, 6097 |
| HindIII | AAGCTT | 6 cut(s) | 456, 1074, 1703, 2128, 4628, 6060 |
| HpaII | CCGG | 9 cut(s) | 197, 378, 918, 2731, 3317, 3474, 3671, 3777, 5485 |
| Hpy99I | CGWCG | 5 cut(s) | 68, 167, 271, 2841, 6117 |
| HpyCH4IV | ACGT | 8 cut(s) | 66, 269, 1594, 2019, 3793, 3871, 4884, 5196 |
| HpySE526I | ACGT | 8 cut(s) | 66, 269, 1594, 2019, 3793, 3871, 4884, 5196 |
| HspAI | GCGC | 3 cut(s) | 1568, 4765, 6097 |
| Kpn2I | TCCGGA | 1 cut(s) | 3670 |
| Ksp22I | TGATCA | 6 cut(s) | 2233, 2274, 3391, 3628, 4237, 5626 |
| KspI | CCGCGG | 1 cut(s) | 3279 |
| LguI | GCTCTTC | 4 cut(s) | 800, 1497, 2857, 5505 |
| LmnI | GCTCC | 8 cut(s) | 349, 2118, 2251, 3642, 4708, 5046, 5456, 5639 |
| Lsp1109I | GCAGC | 8 cut(s) | 382, 1476, 1783, 1786, 3703, 5603, 5842, 6234 |
| MaeII | ACGT | 8 cut(s) | 66, 269, 1594, 2019, 3793, 3871, 4884, 5196 |
| MfeI | CAATTG | 5 cut(s) | 116, 1758, 2314, 2395, 5652 |
| MflI | RGATCY | 3 cut(s) | 2386, 4942, 5875 |
| MhlI | GDGCHC | 5 cut(s) | 2267, 3240, 3871, 4578, 4705 |
| MluI | ACGCGT | 1 cut(s) | 4578 |
| MlyI | GAGTC | 7 cut(s) | 230, 320, 457, 1773, 2035, 3262, 5120 |
| MmeI | TCCRAC | 3 cut(s) | 721, 2819, 3073 |
| Mph1103I | ATGCAT | 5 cut(s) | 308, 1228, 1291, 1401, 3812 |
| MroI | TCCGGA | 1 cut(s) | 3670 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1076, 4715, 5937, 5966 |
| MslI | CAYNNNNRTG | 7 cut(s) | 504, 1340, 2241, 2602, 2676, 2940, 4854 |
| MspA1I | CMGCKG | 6 cut(s) | 3278, 3397, 4589, 5410, 5594, 5855 |
| MspCI | CTTAAG | 2 cut(s) | 2201, 5516 |
| MspI | CCGG | 9 cut(s) | 197, 378, 918, 2731, 3317, 3474, 3671, 3777, 5485 |
| MunI | CAATTG | 5 cut(s) | 116, 1758, 2314, 2395, 5652 |
| Mva1269I | GAATGC | 5 cut(s) | 308, 1291, 2637, 5224, 5459 |
| MvnI | CGCG | 7 cut(s) | 2772, 3278, 3865, 4580, 4765, 4767, 5389 |
| NciI | CCSGG | 2 cut(s) | 3317, 3474 |
| NcoI | CCATGG | 1 cut(s) | 9 |
| NdeI | CATATG | 2 cut(s) | 774, 1099 |
| NheI | GCTAGC | 1 cut(s) | 3911 |
| NlaIV | GGNNCC | 9 cut(s) | 351, 2834, 3965, 5250, 5641, 5752, 5877, 6276, 6301 |
| NmuCI | GTSAC | 3 cut(s) | 148, 3772, 5758 |
| NsbI | TGCGCA | 2 cut(s) | 1569, 6098 |
| NsiI | ATGCAT | 5 cut(s) | 308, 1228, 1291, 1401, 3812 |
| NspI | RCATGY | 3 cut(s) | 1269, 3810, 4638 |
| NspV | TTCGAA | 2 cut(s) | 364, 2742 |
| OliI | CACNNNNGTG | 1 cut(s) | 2602 |
| PaeI | GCATGC | 1 cut(s) | 1269 |
| PaeR7I | CTCGAG | 2 cut(s) | 247, 4489 |
| PagI | TCATGA | 1 cut(s) | 5941 |
| PceI | AGGCCT | 1 cut(s) | 765 |
| PciSI | GCTCTTC | 4 cut(s) | 800, 1497, 2857, 5505 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 294 |
| PctI | GAATGC | 5 cut(s) | 308, 1291, 2637, 5224, 5459 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1076, 4715, 5937, 5966 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1337, 1760, 1898 |
| PfoI | TCCNGGA | 5 cut(s) | 3472, 5043, 5211, 5841, 5878 |
| PleI | GAGTC | 7 cut(s) | 229, 319, 457, 1772, 2034, 3261, 5119 |
| PpsI | GAGTC | 7 cut(s) | 229, 319, 457, 1772, 2034, 3261, 5119 |
| Ppu21I | YACGTR | 2 cut(s) | 1595, 5197 |
| PpuMI | RGGWCCY | 2 cut(s) | 6274, 6299 |
| PshAI | GACNNNNGTC | 1 cut(s) | 748 |
| PsiI | TTATAA | 2 cut(s) | 974, 3303 |
| Psp5II | RGGWCCY | 2 cut(s) | 6274, 6299 |
| PspFI | CCCAGC | 1 cut(s) | 5851 |
| PspN4I | GGNNCC | 9 cut(s) | 351, 2834, 3965, 5250, 5641, 5752, 5877, 6276, 6301 |
| PspPPI | RGGWCCY | 2 cut(s) | 6274, 6299 |
| PspXI | VCTCGAGB | 1 cut(s) | 4489 |
| PstI | CTGCAG | 3 cut(s) | 1070, 1773, 4022 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1898, 2347, 5044 |
| PsuI | RGATCY | 3 cut(s) | 2386, 4942, 5875 |
| PvuII | CAGCTG | 5 cut(s) | 3397, 4589, 5410, 5594, 5855 |
| RseI | CAYNNNNRTG | 7 cut(s) | 504, 1340, 2241, 2602, 2676, 2940, 4854 |
| SacII | CCGCGG | 1 cut(s) | 3279 |
| SapI | GCTCTTC | 4 cut(s) | 800, 1497, 2857, 5505 |
| ScaI | AGTACT | 4 cut(s) | 395, 3388, 3651, 5647 |
| SchI | GAGTC | 7 cut(s) | 230, 320, 457, 1773, 2035, 3262, 5120 |
| SduI | GDGCHC | 5 cut(s) | 2267, 3240, 3871, 4578, 4705 |
| SfcI | CTRYAG | 5 cut(s) | 912, 1066, 1769, 2542, 4018 |
| Sfr274I | CTCGAG | 2 cut(s) | 247, 4489 |
| Sfr303I | CCGCGG | 1 cut(s) | 3279 |
| SfuI | TTCGAA | 2 cut(s) | 364, 2742 |
| SgrBI | CCGCGG | 1 cut(s) | 3279 |
| SinI | GGWCC | 7 cut(s) | 1648, 3095, 3280, 3353, 3964, 6274, 6299 |
| SlaI | CTCGAG | 2 cut(s) | 247, 4489 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 504, 1340, 2241, 2602, 2676, 2940, 4854 |
| SnaBI | TACGTA | 1 cut(s) | 1595 |
| SpeI | ACTAGT | 3 cut(s) | 1294, 4088, 5600 |
| SphI | GCATGC | 1 cut(s) | 1269 |
| SseBI | AGGCCT | 1 cut(s) | 765 |
| SspI | AATATT | 4 cut(s) | 1348, 3113, 3785, 4958 |
| StuI | AGGCCT | 1 cut(s) | 765 |
| StyI | CCWWGG | 3 cut(s) | 9, 2614, 3617 |
| TaiI | ACGT | 8 cut(s) | 69, 272, 1597, 2022, 3796, 3874, 4887, 5199 |
| TaqII | GACCGA | 1 cut(s) | 5605 |
| TauI | GCSGC | 3 cut(s) | 3363, 4086, 5146 |
| TseFI | GTSAC | 3 cut(s) | 148, 3772, 5758 |
| TseI | GCWGC | 8 cut(s) | 370, 1464, 1771, 1774, 3716, 5591, 5855, 6222 |
| Tsp45I | GTSAC | 3 cut(s) | 148, 3772, 5758 |
| TspGWI | ACGGA | 4 cut(s) | 2825, 3956, 4351, 6101 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1337, 1760, 1898 |
| Vha464I | CTTAAG | 2 cut(s) | 2201, 5516 |
| VneI | GTGCAC | 2 cut(s) | 3867, 4574 |
| VpaK11BI | GGWCC | 7 cut(s) | 1648, 3095, 3280, 3353, 3964, 6274, 6299 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4342 |
| XbaI | TCTAGA | 1 cut(s) | 1445 |
| XceI | RCATGY | 3 cut(s) | 1269, 3810, 4638 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 51, 2256, 3290 |
| XhoI | CTCGAG | 2 cut(s) | 247, 4489 |
| XmiI | GTMKAC | 4 cut(s) | 3256, 3975, 4041, 5302 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1076, 4715, 5937, 5966 |
| ZrmI | AGTACT | 4 cut(s) | 395, 3388, 3651, 5647 |
| Zsp2I | ATGCAT | 5 cut(s) | 308, 1228, 1291, 1401, 3812 |