Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001545

Physical Location & Seq

Genomic Coordinates Forward (+)

53020416 .. 53020994

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAATGTGGTTGCCTGGAGGCTTCAATTGTTAGTGGTCATGGAGGATTTAGTGTGGATAGAAAAGCAAGACCATGAAGCAGCTGGAGCTAGTAGAATATCTGCGGGGGACTCTCAGGGTGGTGGAACTAGTATTGCATTTGCTAGCAGGGATCAGGAGTTTGACCGTTCCTCGACATATAATTCTTCCTTCCCTCCAGATGATATTGTAGAGTGGTTACTGGTTAGGGCATCACAGCAATGGTCCCTCGTCCTCGACCATTCAGCTGCCAACCTTGATCATTTCGATCCTGATATACCTCACCACCTTGCATGTTATTTGGAAACTGATACAGGTAGTCTGGACCATTTCCATTCCTACATGACCACCAACGCGCGCAGAATTCAAATGGCTGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

4.73

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001545)

Species	Orthologous Gene IDs
malus_domestica	MD12G1068700.v1.1
prunus_persica	Prupe.7G065300_v2.0.a1 Prupe.7G065400_v2.0.a1 Prupe.7G065500_v2.0.a1 Prupe.7G065600_v2.0.a1
pyrus_communis	pycom12g06030 pycom13g10720
rosa_chinensis	RchiOBHm_Chr1g0317981 RchiOBHm_Chr1g0317991 RchiOBHm_Chr4g0429701 RchiOBHm_Chr4g0429711
rosa_laevigata	RLG00000007048 RLG00000007049 RLG00000007051 RLG00000030565 RLG00000030570
rosa_multiflora	Rmu_co8025080.1_g000001 Rmu_co8402911.1_g000001 Rmu_sc0010349.1_g000002 Rmu_sc0011424.1_g000032 Rmu_sc0011424.1_g000033 Rmu_ssc0000008.1_g000024 Rmu_ssc0000008.1_g000026 Rmu_ssc0000008.1_g000027
rosa_roxburghii	Rroxscaffold_2G00084300 Rroxscaffold_3G00269640 Rroxscaffold_4G00330050 Rroxscaffold_4G00330060 Rroxscaffold_4G00330070 Rroxscaffold_5G00371450 Rroxscaffold_5G00371480 Rroxscaffold_5G00371490 Rroxscaffold_5G00371500 Rroxscaffold_7G00216530
rosa_rugosa	Rorug01G0019000 Rorug01G0019000 Rorug04G0237600
rosa_samantha	Rh1AG030600 Rh1CG029300 Rh1DG018600 Rh1DG041000 Rh4AG293800 Rh4AG293900 Rh4BG299800 Rh4BG299900 Rh4CG315500 Rh4DG296900 Rh4DG297000
rosa_wichuraiana	Rw0G017370 Rw1G002390 Rw4G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	374, 376
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	159, 281
AcsI	RAATTY	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	26, 386
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	83, 89, 266
AluI	AGCT	3 cut(s)	83, 89, 266
AlwI	GGATC	2 cut(s)	159, 281
ApeKI	GCWGC	3 cut(s)	80, 266, 392
ApoI	RAATTY	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	376, 378
AspS9I	GGNCC	2 cut(s)	243, 343
AsuHPI	GGTGA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	243, 343
BbvI	GCAGC	3 cut(s)	92, 253, 379
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	3 cut(s)	90, 129, 144
BisI	GCNGC	3 cut(s)	81, 267, 393
BlsI	GCNGC	3 cut(s)	82, 268, 394
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	2 cut(s)	243, 343
BmgT120I	GGNCC	2 cut(s)	243, 343
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	239
BmtI	GCTAGC	1 cut(s)	147
BpmI	CTGGAG	3 cut(s)	37, 105, 180
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	225
BsePI	GCGCGC	1 cut(s)	374
BseXI	GCAGC	3 cut(s)	92, 253, 379
Bsh1236I	CGCG	2 cut(s)	374, 376
BslFI	GGGAC	2 cut(s)	122, 229
BsmFI	GGGAC	2 cut(s)	122, 229
Bsp143I	GATC	3 cut(s)	151, 277, 286
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	2 cut(s)	374, 376
BspLI	GGNNCC	1 cut(s)	245
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	159, 281
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	225
BssHII	GCGCGC	1 cut(s)	374
BssMI	GATC	3 cut(s)	151, 277, 286
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	145, 376
BstDEI	CTNAG	2 cut(s)	114, 399
BstFNI	CGCG	2 cut(s)	374, 376
BstHHI	GCGC	2 cut(s)	376, 378
BstKTI	GATC	3 cut(s)	154, 280, 289
BstMBI	GATC	3 cut(s)	151, 277, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	14
BstUI	CGCG	2 cut(s)	374, 376
BstV1I	GCAGC	3 cut(s)	92, 253, 379
Cac8I	GCNNGC	2 cut(s)	145, 376
CfoI	GCGC	2 cut(s)	376, 378
Cfr13I	GGNCC	2 cut(s)	243, 343
CviAII	CATG	4 cut(s)	40, 74, 312, 361
CviJI	RGCY	5 cut(s)	22, 83, 89, 266, 392
CviKI_1	RGCY	5 cut(s)	22, 83, 89, 266, 392
DdeI	CTNAG	2 cut(s)	114, 399
DpnI	GATC	3 cut(s)	153, 279, 288
DpnII	GATC	3 cut(s)	151, 277, 286
Eco47I	GGWCC	2 cut(s)	243, 343
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	4 cut(s)	43, 77, 315, 364
FaiI	YATR	7 cut(s)	41, 75, 178, 180, 296, 313, 362
FaqI	GGGAC	2 cut(s)	122, 229
FatI	CATG	4 cut(s)	39, 73, 311, 360
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	81, 267, 393
Fsp4HI	GCNGC	3 cut(s)	81, 267, 393
FspBI	CTAG	3 cut(s)	90, 129, 144
GlaI	GCGC	2 cut(s)	375, 377
GluI	GCNGC	3 cut(s)	81, 267, 393
GsuI	CTGGAG	3 cut(s)	37, 105, 180
HhaI	GCGC	2 cut(s)	376, 378
Hin1II	CATG	4 cut(s)	43, 77, 315, 364
Hin6I	GCGC	2 cut(s)	374, 376
HinP1I	GCGC	2 cut(s)	374, 376
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	293
Hpy188III	TCNNGA	4 cut(s)	155, 197, 290, 341
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	137, 311, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	114, 399
Hsp92II	CATG	4 cut(s)	43, 77, 315, 364
HspAI	GCGC	2 cut(s)	374, 376
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	151, 277, 286
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	3 cut(s)	92, 253, 379
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	3 cut(s)	90, 129, 144
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	153, 279, 288
MboI	GATC	3 cut(s)	151, 277, 286
MboII	GAAGA	1 cut(s)	177
MfeI	CAATTG	1 cut(s)	26
MluCI	AATT	3 cut(s)	26, 181, 381
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	7 cut(s)	12, 37, 181, 204, 257, 263, 309
MslI	CAYNNNNRTG	1 cut(s)	238
MspA1I	CMGCKG	2 cut(s)	83, 266
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	2 cut(s)	374, 376
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	3 cut(s)	151, 277, 286
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	43, 77, 315, 364
NlaIV	GGNNCC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	315
PauI	GCGCGC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	82, 268, 394
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	243, 343
PteI	GCGCGC	1 cut(s)	374
PvuII	CAGCTG	2 cut(s)	83, 266
RseI	CAYNNNNRTG	1 cut(s)	238
SatI	GCNGC	3 cut(s)	81, 267, 393
Sau3AI	GATC	3 cut(s)	151, 277, 286
Sau96I	GGNCC	2 cut(s)	243, 343
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	7 cut(s)	85, 91, 268, 276, 301, 309, 337
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	2 cut(s)	243, 343
SmiMI	CAYNNNNRTG	1 cut(s)	238
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	3 cut(s)	26, 181, 381
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	90, 129, 144
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	173, 255, 285
TasI	AATT	3 cut(s)	26, 181, 381
TseI	GCWGC	3 cut(s)	80, 266, 392
TspDTI	ATGAA	2 cut(s)	17, 90
VpaK11BI	GGWCC	2 cut(s)	243, 343
XapI	RAATTY	1 cut(s)	381
XceI	RCATGY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XspI	CTAG	3 cut(s)	90, 129, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.