Rw1G002390

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
4368647 .. 4380080
11434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002390.1

Sequence Viewer

Length: 6234 bp
ATGACCACCACTCAAACCTCCTCAACTTTGCCCCATTTCACCCGTCCAAGGAAATTTGAGGTCTTCCTGAGTTTCAGAGGTTTGGACACCCGAAAAGGTTTTACTGACCACCTATACAAGGCTTTATTTCTTAATGGAATCCACACGTTTAGGGATGATGAACAACTTGAGAGTGGGAAGCCCATTTCTTTGGAACTCTCCAAAGCAATTCGAGAATCAGATATTTCAGTCATCATTCTTTCAAAAAACTATGCAACGTCAACATGGTGTCTAGATGAACTAGCGGAAATGGTTGACCGCATGGATGAGCCTGGAGGACTCATAATCTTGCCTGTGTTCTACGACGTGACACCATCTCAAGTACGAGAGCAGACCGGAGATTCTTTTGAAGAAGCGTTCGCTCAACATGAACACAATTTCGTAGGGGACACAGGAAAGGTGACAAGATGGAGAAAATCTTTGATTCAAGTCGCTGGCCTCTCCGGATATGATTTAAGAAATTTTAGGCACGAAACAGAAGTGATTCAAAGGATAGTTGAACGCATTTTTGGTGCATTGAATTACACAAACCATATATTCTCTAATGATTTGAAGGACTTTGTTGGTATTGATCGTGTGAAAGAAATTGAATTGAACTTGTGTATGGAGTCGGAAGAAATTTGTGTAGTTGGGATTTGTGGCATGCCAGGGATTGGTAAGACAACCGTTGCACAAGCTCTTTTTGTAAGAATCCGCAATCAATTTGAAGCTTTTAGTTTCATTTCTAAGGTTGGAGAAATATCTAGGAGTGAAAGTTTATTTCATATCCAAGAACAACTTTGTGATGACTTGTTGAATAGAAAAGTAAACATAAAGAATGTCAATGAAGTCATAAGCAGGAGATTGCGTGGCAAACGAGTGCTTATCGTTCTTGACAATGTGGATGAATTAGAACAAATAGAGTCTGTAGCTGGCAGTGGTGATAATTTGTATGATCGATTCGGTCCTGGTAGTAGAATCATCATAACTACAAGAGATGAAAGGTTGTTGATAAACTATGAGCCAAAAATATACAAGGTTGAGAAACTTACTGAAGATGAGCTCTTCTGCTCTTCTCTGGCTTACAAATTTGTAGACTATATTGATGGTCTTCCTTTGGCTCTTGTAGTTTTGGGTTCCTCATTATTCAAAAGAAGTGTAAAAGAATGGTCTAGTAAGTTTAATAGATTGAAAGATTACAATTATTCTGGTGAGAGGAAAATCATTGATATTCTCAAAGTCAGTTTTGATGGATTAGAGAATCAAGCAGAGAAGGAAATATTTTTAGACACTGCATGTTTCTTCAGAGGCGAGGATGCATGTCGTGTAGAAAAGATATTTGAGAGTTGTGGCTACTATCCGGACATCAGTATCAATATCCTCCTTGAGAAATATTTAGTAAGTATTATAGGAGGAAAACTGTGGATGCATGATTTACTTCAAGAAATGGGCAGAGAAATTGTTCGAGGAGAGTCCCAAAAGCCAGGAAAGCGCAGCAGATTGTGGCTTCATACAGATGCCCTTCCTTTACTTGGGAATAATAAGGGGACAGATGCTGTCAAAGGTATCTTCTTATGCTCGCCTCAACAAGACAATGTGCACTTGAAGGCAGATCCCTTCGCAAACATGGAAAGTCTAAGAATGTTGAAAATTTACAATGTGATATTTTCTGGATGCCTTGAGTTTCTTTCAAATGAGTTAAGCTTCTTGGAATGGCATGGATATCCTTTAAAATCCCTGCCTTCATGTTTTGAACCTGATAAACTTGTTGAACTGAATTTGTATCAGAGTGAAATAGAGCAATTGTGGGAAGAAATTGAGAGGCCTTTGGAAAAGTTGGTGATAATCAACCTTACCGACTGTGAATACTTGATCAAGACCCCTGACTTTGATAAAGTGCCAAAGCTTGAGAGGCTAATCCTCAAAGGTTGTACCAGATTGTCTGAGGTTGACCTCTCTGTTGGAGTGCTGCAACGGCTCATTTTGCTGAATCTGGAAGGTTGTGAATGTCTTACTACTCTTCTTCCCAACAGTATCAACTTGAGATCGCTCACAAAGTTCATTCTTTCGGGATGTTCCAAACTGAAAAACCTTCCAGAATTTGGGGAAGAAATGAAACAATTAAGGGAACTTCACTTAAATGGGACAGCTATAGAAGAGCTACCAACATCAATGAAACATTTGACTGGCCTTACTCTGCTCAATCTCAAAGAATGCAAGAACCTTCTTTGTCTGCCAGAGGTCATTTGTACCGCTTTGACATCACTTCAAATATTGAACCTCTCAGGGTGTTTAAATCTTGCCTTGTTGCCGGAAAGCTTGGTGTGTTTAGAATACTTAGAGGAGCTTCATGCAGGTGGGAGTGCTATACCACAATTTCCGTCCTCCATTCTACATCTGAAAAACCTGCAAGTTTTATCTTTTGCTGGTTGTAAGGGACTGCCATCCTCTGTGGGTTTCGAGTTGCCTGCTTCATTTTCATCTGGTTTGTGCTCTTTGAAGAAATTAAACCTTCGCAACTGCAATCTGTGTGAAGGATCAATCCCAGATGATCTTGGAAGCGTATCCTCTTTGCAGTATCTAGATTTAAGTGGAAACAATTTCATGACCATACCAAAAAGTATCTCTCAACTTTCTCAGCTTGAAGACCTTGTATTGGATAATTGTAGCAACCTTCAATCATTGCCAAGACTTCCATCAAGTATAAGAGTTGTAACGGCACAGAATTGTCCTCTCCTACAGGGAACACATTCGAATAAATTAACGGTGTGGACTTCCACTGCTGCAGGATTTAGTGTTATAAATTGCCAAAGTGGTAAAGCCAAGCCTCAGTGGATTGACTTACCTGATCCACATCTTCGGAGGCCATTCTGTCAAACATTCTTCGAGGGTGCAATTTATCGCGGTAGTAATTTTGAATATAGTTATATATCAAAGGATACTCCTGCATGGTTGAGCCGTCGGAGTACTGGATCATCTATAACAATCCCACTACCTCCGGATTTGGATGATAACTGTAAATGGATGGGATTTGCTCTGTGTTTTACTTGTGTAACGCAGCATCATGATTCTCTGGATACAACATATGTCTTCCTTGATGACCAAAAGCAAATAAACTTGAATCGCAATTACCGTATTCATTTCTATACAACGGAAGATCCTCTTGAACGTCCCCTAGTGCATAATTACCCTGATTGCGATTGGGTTGGATCATTCATGCACTGGAACTATACACCAAGAAGTGATTTTGTAGAAATTTCGAATAAACGCTTCATCCGAGCTACAATTGTACCAGGCAGCCCAGAGGTGGAGGTGACAGGGTGTGCCGCCAGTCTAATATACTTGGAAGAAGTGGCAGAATTTGTCCAGAAAATGAATATTCACCATGACAATTGCAATAAAGGTTATAGGTATCTAGTGGATGCAATGGGAAGTATTCCTTCGACGAGCAGGATTCAAACTAAACCAGAAGTACAAAAACAAGAAACTACTAGTACTTCTGCCAGGCTTGTAGGACAATTGAGAAGAAACGTGGTGTCGTTGGTTGAAGAACTATTTGAGGGGGGCAACCCACGTCGCTATGATTATGGTTTTATTTTGCCTTTGGGAGAAAAATTAGCTTGGTTTAGTGAACAAAGTACTGGTTGTGTAGTGAGCTCCCCTCTTCCTCCAGAGCTGCATAATGATGGGAATTGGGTAGGATTTGCTCTCTATGTTGTTTGCACTTTGCCTCCAGGTGTTAGCCTTAGCCACAGATTATCATTCTTTGAGTGTCAATTTCATACATCTAATGAAGCCGTGGGTCCGAACCAATTGATACATCGCCTAGTGTTACGTTCCCCCTTCGATGACAATTTGATGGGGTCAAATCGACTCCTTCTTATTCATGTACCACGAGCACGTTTTCCAGAACGATTGAACCGGTGTCGTTGCATTCAAGCTTTATTTGGATCCACCACTCTAGGTGTGCAGGTTGATATATGTGGGATGCATCTAGTATACGACCAAGACTTGAACGGCTTAGTCCAAACAATTGCCCACTGCGCTGTGACTAGTCAGCCTGTTTACTACGGAATTGGTGATTTGACAGTTGCTACGAAATTAGGTAACAATGCTGGAATGACAGCTATGATTACGAATCTGCTCGAGGCAGCTAAATCCAGTGAGGGCAGGTCATTACGCCAAGTTCGTCTTCCTGTGGCTTTTGGGCCTGTAGATTCCGGTGAGACTACTCTGACTTTTAGAGGTTCTATCTTCTTTCCTGCTGACGGCTCGCAACATGAAAGAGAAGGAAGGCCCTTTCATCTACCGGACTTTGGCCCTTCCTTCGACCGTTTCAATAACATGCGCTTGGATAATCAGATCCTGGGTTTTGATCGTTACTTGAAATACAATTCTTGTTTCCCTCCTAATGAAATTGCAGAGTGGTTTGGGCATCCAAGCAGTGGGTCCTCCGTAACAATCCCTCTACCATCATATCTGTATGATGACCCCAATTGGACAGGACTAGCTTTATGTACATACTTTTCAGTCCTCAACCATACAACTACCGACCTTGACAATTTGGATCAAGAAATTTCTCACAACCTTACATGTCTTCTTGAAACTGATAGTGGTTGTCTGGAGTCTCTTCATGGCTATTGCACCACCAACCAAGAATTTGAGTGGTTATATCATATGGGAGGATTCATTTGGTTATCTTATATACCACGATGGTGGTTTTTAGATCAGTTGAATGAATGCAGCCACCTGGAGGCTTCAATTGGAAGTGACCGTGGAAGCTTGTGTGTGCATAGGTGTGGTCTCCGCCTTTTATATCTGCAAGATGAGGAAGGGTTTAAGCAGACCATAATGCACTACATGACCTCCTTGTCTGATATTGATCAAGGGAAAAATAAGCAATTCCAGGACTGCAAGGTGGGATCATCTCCTAGAACTGGCAGCTACATTGACTTTGATCGTTACTCGGTACATAATTTTTGTTTCCCTGCAACTGTAGCTCTAGAGTGGTTTGGGCATCAAGGCAATGGCTCCTCAGTAACAGTCCCACTACCACCAAACTTGCATAGTGATGCTAATTGGATAGGATTGACTTTATGTGCATCCTTCTCAGTCGTGGAGCATCCAACTGCCGACCTTGAAAAATTACATTCAGGAAATCCCCACCACCTGATATGTCATTTGGAGTCAGAAAGAGGTAGTATAGAACCTCTCCATAACTATTGCACCACCAATGAAGAATTCCAGTGGTTGCATTTTGGAGGATTCATTTGGGTATCCTATATACCACGAGATTGGTTTTTGGATCAGTTGAATGAATGCAGTGTCCTCGAGACTTCAATTGCAAGTGATCATGAAAGCTTTAGGGTGCATAACTGTGAGGTCCGTTGTGTATATCAGCATGATATGGAAGAGTTTAAGCAGAGCATATTGCACTGTATGACCTCGCTGCCTGACAATAAAGGAGATGACAAGCAATGCCCTGCAGGTGATGCAGGATCATCAAGCATTCCTAGCAGCTTCGTTGTGGAACCTCATCTTGAAAGATTAGAATGGCTGAATTACAAGAAAGGGCACTTTGATCGCCACTCAATATTCAATTTCTGTTTCCCTTCAAGTATAAATCTAGAGTGGATAGGCGATCAAAGCAGTGGCTCAACCGTGACAATCCCGCTACCACCAAATCTAAACAGAGATAGTGATTGGATAGGATTGGCTGTATGTTCATACTTCTCGGTCATGGAGCATCCGATTGACGACCTTGACACTTTGGACATTCAAGCAATTTCCCACCACCTGATATGTCATTTGGAATCAGAGAGAGGCAGTCTAGAGTCTCTCCATGACTACTGCACCACCAATGAAGAATTCATGTGGTTGCATCTTGGAGGATTCATTTGGCTATCCTATATACCACGAGCGTGGTTTTCAGATCATTTGAATGAATGCGGTGTTCTGACGGCTTCAATTGCAAGTGATCACAAAGTATTTAGTGTGCACATGTGTGGGCTTCATCTTATGCATCAGCGTGATGAGGAAGAGTTTAAACAGACCCTAGTACACTACATGGCTTTGTCGTCAGATAATAAAGGGAAAAATAAGCAATATCATCACGGTGAGACGGAATCATCGAGCAAAATAGACAACAGCATTGAGGAACTCCCTCACATTGAAAGAGTGCTCAATGATGTCAAGGGTAAACGAGTACTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2077

Amino Acids

235.26

Weight (kDa)

5.44

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 190 1.8e-44 TIR domain
TIR_2 PF13676 21 - 118 2.7e-14 TIR domain
NB-ARC PF00931 211 - 360 2.2e-16 NB-ARC domain
NACHT PF05729 223 - 343 6.7e-10 NACHT domain
WHD_ROQ1 PF23282 427 - 498 3.6e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 836 - 898 1.6e-06 Leucine-rich repeat region
LRR_8 PF13855 838 - 895 9.1e-06 Leucine rich repeat
C-JID PF20160 985 - 1123 2.8e-06 C-JID domain
C-JID PF20160 1474 - 1616 1e-09 C-JID domain
C-JID PF20160 1675 - 1810 2.3e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2819
AarI CACCTGC 2 cut(s) 2363, 5495
AasI GACNNNNNNGTC 1 cut(s) 4888
Acc36I ACCTGC 5 cut(s) 2363, 2433, 3979, 4179, 5495
AccB7I CCANNNNNTGG 3 cut(s) 692, 2120, 4463
AccI GTMKAC 2 cut(s) 1113, 4017
AccII CGCG 1 cut(s) 2922
AccIII TCCGGA 3 cut(s) 482, 1378, 3016
AciI CCGC 9 cut(s) 284, 298, 733, 2271, 2922, 3345, 4825, 5690, 5967
AcuI CTGAAG 2 cut(s) 1092, 1306
AflIII ACRYGT 3 cut(s) 144, 4610, 6018
AgeI ACCGGT 1 cut(s) 3939
AhlI ACTAGT 2 cut(s) 3509, 4070
AjiI CACGTC 2 cut(s) 346, 3593
AjuI GAANNNNNNNTTGG 8 cut(s) 531, 563, 4194, 4226, 5243, 5275, 5870, 5902
AleI CACNNNNGTG 3 cut(s) 4732, 5938, 6021
Alw21I GWGCWC 7 cut(s) 1083, 1620, 2513, 3677, 3919, 6018, 6201
Alw26I GTCTC 6 cut(s) 4238, 4650, 4826, 5345, 5859, 6131
Alw44I GTGCAC 2 cut(s) 1616, 6014
AlwNI CAGNNNCTG 2 cut(s) 1574, 4384
Ama87I CYCGRG 2 cut(s) 4163, 5348
Aor13HI TCCGGA 3 cut(s) 482, 1378, 3016
AoxI GGCC 7 cut(s) 475, 1841, 2206, 2882, 4226, 4313, 4336
ApaLI GTGCAC 2 cut(s) 1616, 6014
AsiGI ACCGGT 1 cut(s) 3939
Asp700I GAANNNNTTC 3 cut(s) 522, 1479, 2767
AspLEI GCGC 3 cut(s) 1512, 4064, 4368
AspS9I GGNCC 7 cut(s) 983, 3821, 4226, 4314, 4337, 4467, 5401
AsuII TTCGAA 2 cut(s) 2771, 3278
AvaI CYCGRG 2 cut(s) 4163, 5348
AvaII GGWCC 4 cut(s) 983, 3821, 4467, 5401
BaeGI GKGCMC 3 cut(s) 1620, 5595, 6018
BaeI ACNNNNGTAYC 4 cut(s) 1372, 1405, 3291, 3324
BamHI GGATCC 1 cut(s) 3968
BanII GRGCYC 2 cut(s) 1083, 3677
BauI CACGAG 3 cut(s) 3912, 5307, 5934
BbsI GAAGAC 6 cut(s) 55, 1121, 2670, 3100, 4202, 4607
Bbv12I GWGCWC 7 cut(s) 1083, 1620, 2513, 3677, 3919, 6018, 6201
BceAI ACGGC 7 cut(s) 2009, 2751, 2961, 3800, 4051, 4303, 5994
BcgI CGANNNNNNTGC 6 cut(s) 2468, 2502, 5329, 5363, 5582, 5616
BciVI GTATCC 4 cut(s) 2593, 2950, 3088, 5305
BclI TGATCA 4 cut(s) 1890, 4900, 5368, 5995
BcoDI GTCTC 6 cut(s) 4238, 4650, 4826, 5345, 5859, 6131
BcuI ACTAGT 2 cut(s) 3509, 4070
BfmI CTRYAG 7 cut(s) 945, 2169, 2756, 2802, 4230, 5013, 5502
BfuAI ACCTGC 5 cut(s) 2363, 2433, 3979, 4179, 5495
BfuI GTATCC 4 cut(s) 2593, 2950, 3088, 5305
BmcAI AGTACT 4 cut(s) 2986, 3514, 3658, 6225
Bme18I GGWCC 4 cut(s) 983, 3821, 4467, 5401
BmeT110I CYCGRG 2 cut(s) 4163, 5348
BmgBI CACGTC 2 cut(s) 346, 3593
BmgT120I GGNCC 7 cut(s) 983, 3821, 4226, 4314, 4337, 4467, 5401
BmiI GGNNCC 6 cut(s) 1156, 3822, 3970, 4468, 5050, 5550
BpiI GAAGAC 6 cut(s) 55, 1121, 2670, 3100, 4202, 4607
BplI GAGNNNNNCTC 2 cut(s) 3664, 3696
BpmI CTGGAG 5 cut(s) 333, 3672, 3735, 4661, 4790
Bpu10I CCTNAGC 1 cut(s) 3764
Bpu14I TTCGAA 2 cut(s) 2771, 3278
BpuEI CTTGAG 6 cut(s) 188, 342, 1424, 1718, 1946, 2080
Bsa29I ATCGAT 1 cut(s) 976
BsaBI GATNNNNATC 2 cut(s) 2871, 4899
BsaI GGTCTC 1 cut(s) 4826
BsaJI CCNNGG 5 cut(s) 47, 686, 3816, 4384, 4792
BsaWI WCCGGW 7 cut(s) 374, 482, 1378, 3016, 3939, 4238, 4327
BsaXI ACNNNNNCTCC 8 cut(s) 778, 808, 871, 901, 3733, 3763, 4868, 4898
Bse118I RCCGGY 1 cut(s) 3939
Bse1I ACTGG 9 cut(s) 2209, 2992, 3245, 3348, 3664, 4179, 4960, 5263, 6231
Bse3DI GCAATG 4 cut(s) 2699, 3450, 5050, 5501
Bse8I GATNNNNATC 2 cut(s) 2871, 4899
BseAI TCCGGA 3 cut(s) 482, 1378, 3016
BseCI ATCGAT 1 cut(s) 976
BseDI CCNNGG 5 cut(s) 47, 686, 3816, 4384, 4792
BseJI GATNNNNATC 2 cut(s) 2871, 4899
BseMI GCAATG 4 cut(s) 2699, 3450, 5050, 5501
BseMII CTCAG 7 cut(s) 59, 1953, 2316, 2669, 2861, 5067, 5142
BseNI ACTGG 9 cut(s) 2209, 2992, 3245, 3348, 3664, 4179, 4960, 5263, 6231
BseRI GAGGAG 4 cut(s) 10, 1500, 2375, 5041
BseSI GKGCMC 3 cut(s) 1620, 5595, 6018
BsgI GTGCAG 2 cut(s) 4007, 5854
Bsh1236I CGCG 1 cut(s) 2922
Bsh1285I CGRYCG 1 cut(s) 4351
BshFI GGCC 7 cut(s) 477, 1843, 2208, 2884, 4228, 4315, 4338
BshTI ACCGGT 1 cut(s) 3939
BshVI ATCGAT 1 cut(s) 976
BsiEI CGRYCG 1 cut(s) 4351
BsiHKAI GWGCWC 7 cut(s) 1083, 1620, 2513, 3677, 3919, 6018, 6201
BsiHKCI CYCGRG 2 cut(s) 4163, 5348
BsiSI CCGG 8 cut(s) 375, 483, 1379, 2330, 3017, 3940, 4239, 4328
BslFI GGGAC 7 cut(s) 440, 1477, 1579, 2176, 2469, 3174, 5048
BsmAI GTCTC 6 cut(s) 4238, 4650, 4826, 5345, 5859, 6131
BsmBI CGTCTC 1 cut(s) 6131
BsmFI GGGAC 7 cut(s) 440, 1477, 1579, 2176, 2469, 3174, 5048
BsmI GAATGC 6 cut(s) 2237, 3951, 4763, 5342, 5526, 5969
BsnI GGCC 7 cut(s) 477, 1843, 2208, 2884, 4228, 4315, 4338
Bso31I GGTCTC 1 cut(s) 4826
BsoBI CYCGRG 2 cut(s) 4163, 5348
Bsp119I TTCGAA 2 cut(s) 2771, 3278
Bsp1286I GDGCHC 8 cut(s) 1083, 1620, 2513, 3677, 3919, 5595, 6018, 6201
Bsp13I TCCGGA 3 cut(s) 482, 1378, 3016
Bsp1407I TGTACA 1 cut(s) 4535
BspACI CCGC 9 cut(s) 284, 298, 733, 2271, 2922, 3345, 4825, 5690, 5967
BspANI GGCC 7 cut(s) 477, 1843, 2208, 2884, 4228, 4315, 4338
BspCNI CTCAG 7 cut(s) 60, 1954, 2315, 2668, 2860, 5066, 5141
BspDI ATCGAT 1 cut(s) 976
BspEI TCCGGA 3 cut(s) 482, 1378, 3016
BspFNI CGCG 1 cut(s) 2922
BspHI TCATGA 3 cut(s) 2622, 3082, 5371
BspLI GGNNCC 6 cut(s) 1156, 3822, 3970, 4468, 5050, 5550
BspMAI CTGCAG 2 cut(s) 2806, 5506
BspMI ACCTGC 5 cut(s) 2363, 2433, 3979, 4179, 5495
BspQI GCTCTTC 3 cut(s) 1088, 1096, 2169
BspT104I TTCGAA 2 cut(s) 2771, 3278
BspTNI GGTCTC 1 cut(s) 4826
BsrDI GCAATG 4 cut(s) 2699, 3450, 5050, 5501
BsrFI RCCGGY 1 cut(s) 3939
BsrGI TGTACA 1 cut(s) 4535
BsrI ACTGG 9 cut(s) 2209, 2992, 3245, 3348, 3664, 4179, 4960, 5263, 6231
BssAI RCCGGY 1 cut(s) 3939
BssECI CCNNGG 5 cut(s) 47, 686, 3816, 4384, 4792
BssNAI GTATAC 1 cut(s) 4018
BssSI CACGAG 3 cut(s) 3912, 5307, 5934
BssT1I CCWWGG 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 4018
Bst2BI CACGAG 3 cut(s) 3912, 5307, 5934
Bst6I CTCTTC 8 cut(s) 1088, 1096, 2043, 2169, 3687, 4653, 5424, 6051
BstAPI GCANNNNNTGC 1 cut(s) 5510
BstAUI TGTACA 1 cut(s) 4535
BstBI TTCGAA 2 cut(s) 2771, 3278
BstC8I GCNNGC 6 cut(s) 475, 683, 952, 1598, 2487, 4292
BstDSI CCRYGG 2 cut(s) 3816, 4792
BstENI CCTNNNNNAGG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 2922
BstHHI GCGC 3 cut(s) 1512, 4064, 4368
BstMAI GTCTC 6 cut(s) 4238, 4650, 4826, 5345, 5859, 6131
BstMCI CGRYCG 1 cut(s) 4351
BstNSI RCATGY 6 cut(s) 685, 1317, 1341, 4366, 4614, 6022
BstSFI CTRYAG 7 cut(s) 945, 2169, 2756, 2802, 4230, 5013, 5502
BstSLI GKGCMC 3 cut(s) 1620, 5595, 6018
BstUI CGCG 1 cut(s) 2922
BstV2I GAAGAC 6 cut(s) 55, 1121, 2670, 3100, 4202, 4607
BstX2I RGATCY 4 cut(s) 1630, 3175, 3968, 4380
BstXI CCANNNNNNTGG 4 cut(s) 190, 4734, 5313, 5940
BstYI RGATCY 4 cut(s) 1630, 3175, 3968, 4380
BstZ17I GTATAC 1 cut(s) 4018
Bsu15I ATCGAT 1 cut(s) 976
BsuI GTATCC 4 cut(s) 2593, 2950, 3088, 5305
BsuRI GGCC 7 cut(s) 477, 1843, 2208, 2884, 4228, 4315, 4338
BsuTUI ATCGAT 1 cut(s) 976
BtgI CCRYGG 2 cut(s) 3816, 4792
BtgZI GCGATG 1 cut(s) 3824
BtrI CACGTC 2 cut(s) 346, 3593
BtsI GCAGTG 7 cut(s) 961, 1308, 2796, 4057, 4468, 5347, 5674
BveI ACCTGC 5 cut(s) 2363, 2433, 3979, 4179, 5495
Cac8I GCNNGC 6 cut(s) 475, 683, 952, 1598, 2487, 4292
CaiI CAGNNNCTG 2 cut(s) 1574, 4384
CciI TCATGA 3 cut(s) 2622, 3082, 5371
CfoI GCGC 3 cut(s) 1512, 4064, 4368
Cfr10I RCCGGY 1 cut(s) 3939
Cfr13I GGNCC 7 cut(s) 983, 3821, 4226, 4314, 4337, 4467, 5401
ClaI ATCGAT 1 cut(s) 976
CspAI ACCGGT 1 cut(s) 3939
CspCI CAANNNNNGTGG 2 cut(s) 5061, 5096
DraI TTTAAA 3 cut(s) 1749, 2313, 6064
DrdI GACNNNNNNGTC 1 cut(s) 4888
DseDI GACNNNNNNGTC 1 cut(s) 4888
Eam1104I CTCTTC 8 cut(s) 1088, 1096, 2043, 2169, 3687, 4653, 5424, 6051
EarI CTCTTC 8 cut(s) 1088, 1096, 2043, 2169, 3687, 4653, 5424, 6051
EciI GGCGGA 1 cut(s) 4814
Ecl136II GAGCTC 2 cut(s) 1081, 3675
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 1843
Eco24I GRGCYC 2 cut(s) 1083, 3677
Eco31I GGTCTC 1 cut(s) 4826
Eco32I GATATC 1 cut(s) 1742
Eco47I GGWCC 4 cut(s) 983, 3821, 4467, 5401
Eco53kI GAGCTC 2 cut(s) 1081, 3675
Eco57I CTGAAG 2 cut(s) 1092, 1306
Eco88I CYCGRG 2 cut(s) 4163, 5348
EcoICRI GAGCTC 2 cut(s) 1081, 3675
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 4314, 4467
EcoRI GAATTC 2 cut(s) 5258, 5885
EcoRV GATATC 1 cut(s) 1742
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 4 cut(s) 1339, 1449, 4011, 6042
EcoT38I GRGCYC 2 cut(s) 1083, 3677
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 6131
FalI AAGNNNNNCTT 8 cut(s) 801, 833, 3165, 3197, 3442, 3474, 4194, 4226
FaqI GGGAC 7 cut(s) 440, 1477, 1579, 2176, 2469, 3174, 5048
FauI CCCGC 1 cut(s) 5697
FauNDI CATATG 2 cut(s) 3103, 4695
FbaI TGATCA 4 cut(s) 1890, 4900, 5368, 5995
FblI GTMKAC 2 cut(s) 1113, 4017
FriOI GRGCYC 2 cut(s) 1083, 3677
GlaI GCGC 3 cut(s) 1511, 4063, 4367
GsuI CTGGAG 5 cut(s) 333, 3672, 3735, 4661, 4790
HaeIII GGCC 7 cut(s) 477, 1843, 2208, 2884, 4228, 4315, 4338
HapII CCGG 8 cut(s) 375, 483, 1379, 2330, 3017, 3940, 4239, 4328
HhaI GCGC 3 cut(s) 1512, 4064, 4368
Hin6I GCGC 3 cut(s) 1510, 4062, 4366
HinP1I GCGC 3 cut(s) 1510, 4062, 4366
HincII GTYRAC 3 cut(s) 261, 295, 1969
HindII GTYRAC 3 cut(s) 261, 295, 1969
HindIII AAGCTT 7 cut(s) 747, 1720, 1922, 2335, 3957, 4798, 5377
HpaII CCGG 8 cut(s) 375, 483, 1379, 2330, 3017, 3940, 4239, 4328
Hpy99I CGWCG 4 cut(s) 347, 2982, 3466, 3597
HpyCH4IV ACGT 8 cut(s) 146, 257, 345, 3187, 3549, 3592, 3853, 3919
HpySE526I ACGT 8 cut(s) 146, 257, 345, 3187, 3549, 3592, 3853, 3919
HspAI GCGC 3 cut(s) 1510, 4062, 4366
Kpn2I TCCGGA 3 cut(s) 482, 1378, 3016
Ksp22I TGATCA 4 cut(s) 1890, 4900, 5368, 5995
LguI GCTCTTC 3 cut(s) 1088, 1096, 2169
LmnI GCTCC 5 cut(s) 2362, 3680, 5054, 5137, 5761
MaeII ACGT 8 cut(s) 146, 257, 345, 3187, 3549, 3592, 3853, 3919
MflI RGATCY 4 cut(s) 1630, 3175, 3968, 4380
MhlI GDGCHC 8 cut(s) 1083, 1620, 2513, 3677, 3919, 5595, 6018, 6201
MlyI GAGTC 8 cut(s) 312, 656, 950, 1499, 3885, 4652, 5213, 5861
MmeI TCCRAC 6 cut(s) 630, 751, 1960, 2960, 3205, 5168
Mph1103I ATGCAT 4 cut(s) 1339, 1449, 4011, 6042
MroI TCCGGA 3 cut(s) 482, 1378, 3016
MroXI GAANNNNTTC 3 cut(s) 522, 1479, 2767
MspI CCGG 8 cut(s) 375, 483, 1379, 2330, 3017, 3940, 4239, 4328
MssI GTTTAAAC 1 cut(s) 6064
Mva1269I GAATGC 6 cut(s) 2237, 3951, 4763, 5342, 5526, 5969
MvnI CGCG 1 cut(s) 2922
NdeI CATATG 2 cut(s) 3103, 4695
NlaIV GGNNCC 6 cut(s) 1156, 3822, 3970, 4468, 5050, 5550
NmuCI GTSAC 6 cut(s) 346, 439, 3331, 4066, 4787, 5680
NsiI ATGCAT 4 cut(s) 1339, 1449, 4011, 6042
NspI RCATGY 6 cut(s) 685, 1317, 1341, 4366, 4614, 6022
NspV TTCGAA 2 cut(s) 2771, 3278
OliI CACNNNNGTG 3 cut(s) 4732, 5938, 6021
PaeI GCATGC 1 cut(s) 685
PaeR7I CTCGAG 2 cut(s) 4163, 5348
PagI TCATGA 3 cut(s) 2622, 3082, 5371
PaqCI CACCTGC 2 cut(s) 2363, 5495
PceI AGGCCT 1 cut(s) 1843
PciI ACATGT 2 cut(s) 4610, 6018
PciSI GCTCTTC 3 cut(s) 1088, 1096, 2169
PcsI WCGNNNNNNNCGW 4 cut(s) 3148, 3292, 4204, 6146
PctI GAATGC 6 cut(s) 2237, 3951, 4763, 5342, 5526, 5969
PdmI GAANNNNTTC 3 cut(s) 522, 1479, 2767
PflMI CCANNNNNTGG 3 cut(s) 692, 2120, 4463
PfoI TCCNGGA 1 cut(s) 4923
PinAI ACCGGT 1 cut(s) 3939
PleI GAGTC 8 cut(s) 312, 655, 949, 1498, 3885, 4651, 5212, 5860
PmeI GTTTAAAC 1 cut(s) 6064
PpsI GAGTC 8 cut(s) 312, 655, 949, 1498, 3885, 4651, 5212, 5860
PpuMI RGGWCCY 1 cut(s) 4467
PscI ACATGT 2 cut(s) 4610, 6018
PsiI TTATAA 1 cut(s) 2819
Psp124BI GAGCTC 2 cut(s) 1083, 3677
Psp5II RGGWCCY 1 cut(s) 4467
PspN4I GGNNCC 6 cut(s) 1156, 3822, 3970, 4468, 5050, 5550
PspPI GGNCC 7 cut(s) 983, 3821, 4226, 4314, 4337, 4467, 5401
PspPPI RGGWCCY 1 cut(s) 4467
PspXI VCTCGAGB 1 cut(s) 4163
PstI CTGCAG 2 cut(s) 2806, 5506
PstNI CAGNNNCTG 2 cut(s) 1574, 4384
PsuI RGATCY 4 cut(s) 1630, 3175, 3968, 4380
SacI GAGCTC 2 cut(s) 1083, 3677
SapI GCTCTTC 3 cut(s) 1088, 1096, 2169
Sau96I GGNCC 7 cut(s) 983, 3821, 4226, 4314, 4337, 4467, 5401
SbfI CCTGCAGG 1 cut(s) 5506
ScaI AGTACT 4 cut(s) 2986, 3514, 3658, 6225
SchI GAGTC 8 cut(s) 312, 656, 950, 1499, 3885, 4652, 5213, 5861
SdaI CCTGCAGG 1 cut(s) 5506
SduI GDGCHC 8 cut(s) 1083, 1620, 2513, 3677, 3919, 5595, 6018, 6201
SfcI CTRYAG 7 cut(s) 945, 2169, 2756, 2802, 4230, 5013, 5502
Sfr274I CTCGAG 2 cut(s) 4163, 5348
SfuI TTCGAA 2 cut(s) 2771, 3278
SinI GGWCC 4 cut(s) 983, 3821, 4467, 5401
SlaI CTCGAG 2 cut(s) 4163, 5348
SmlI CTYRAG 8 cut(s) 167, 357, 1403, 1697, 1925, 2059, 4163, 5348
SmoI CTYRAG 8 cut(s) 167, 357, 1403, 1697, 1925, 2059, 4163, 5348
SpeI ACTAGT 2 cut(s) 3509, 4070
SphI GCATGC 1 cut(s) 685
Sse8387I CCTGCAGG 1 cut(s) 5506
SseBI AGGCCT 1 cut(s) 1843
SsiI CCGC 9 cut(s) 284, 298, 733, 2271, 2922, 3345, 4825, 5690, 5967
SspI AATATT 5 cut(s) 1299, 1412, 2292, 3397, 5613
SstI GAGCTC 2 cut(s) 1083, 3677
StuI AGGCCT 1 cut(s) 1843
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 8 cut(s) 149, 260, 348, 3190, 3552, 3595, 3856, 3922
TaqII GACCGA 2 cut(s) 971, 5743
TatI WGTACW 7 cut(s) 2984, 3490, 3512, 3656, 4535, 6076, 6223
TauI GCSGC 1 cut(s) 3347
TseFI GTSAC 6 cut(s) 346, 439, 3331, 4066, 4787, 5680
Tsp45I GTSAC 6 cut(s) 346, 439, 3331, 4066, 4787, 5680
TspGWI ACGGA 6 cut(s) 2388, 3185, 4104, 4462, 5393, 6155
Van91I CCANNNNNTGG 3 cut(s) 692, 2120, 4463
VneI GTGCAC 2 cut(s) 1616, 6014
VpaK11BI GGWCC 4 cut(s) 983, 3821, 4467, 5401
XagI CCTNNNNNAGG 1 cut(s) 116
XbaI TCTAGA 5 cut(s) 271, 2599, 5020, 5644, 5848
XceI RCATGY 6 cut(s) 685, 1317, 1341, 4366, 4614, 6022
XhoI CTCGAG 2 cut(s) 4163, 5348
XmiI GTMKAC 2 cut(s) 1113, 4017
XmnI GAANNNNTTC 3 cut(s) 522, 1479, 2767
ZrmI AGTACT 4 cut(s) 2986, 3514, 3658, 6225
Zsp2I ATGCAT 4 cut(s) 1339, 1449, 4011, 6042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.