Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

30299170 .. 30301075

Gene Structure 1906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGACCCTTCCAACCACCCATTGCTGCCGTACTTACTCCTCCTCATCATCGGCGTCGTATTCTTCCGTACACAGAAGCCTCCAGAGGGTGGCCGTTTCTCCGAGTCCGCAATGTTTCGTCTCCGCCAAGGTTTCTCTGCAGTCTCAATCCGTTTCGCAGCAAAATGTTGTCAGCATGGTGGCTCCAGCAGTGAAGCCTGTTGAGAATGAAACTGCTTTCAAGAAATTGAAATACGGGTTGCTGTCAGCTACGTCTGGGTCTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTAGTTTTGAAGAATCTGAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCAAAGAAGAAGATATTCCCGGCTCTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGATGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACTACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAACATGAGGTGGTCGACGATGTTGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACAATGCCCTCGAGCAGCTCATGGAGTTCACATCTCATCTCTACAAATTTCTTGCGCCTGATGTGACTTTGATAACAGATTTTTGCCACTGTAGAGTTTGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

259

Amino Acids

28.96

Weight (kDa)

6.39

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	111 - 208	1.5e-24	Glucose-6-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	314, 630
AciI	CCGC	2 cut(s)	110, 126
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	34, 72
AfiI	CCNNNNNNNGG	2 cut(s)	88, 91
AgsI	TTSAA	5 cut(s)	223, 232, 302, 545, 648
AluBI	AGCT	4 cut(s)	251, 463, 598, 691
AluI	AGCT	4 cut(s)	251, 463, 598, 691
Alw26I	GTCTC	2 cut(s)	127, 150
AlwI	GGATC	1 cut(s)	591
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	93, 773
ApeKI	GCWGC	3 cut(s)	27, 160, 688
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	2 cut(s)	349, 532
AsuC2I	CCSGG	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	349, 532
BbvI	GCAGC	3 cut(s)	14, 172, 700
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	2 cut(s)	15, 80
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	127, 150
BfmI	CTRYAG	2 cut(s)	140, 763
BisI	GCNGC	3 cut(s)	28, 161, 689
BlsI	GCNGC	3 cut(s)	29, 162, 690
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	349, 532
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	349, 532
BmiI	GGNNCC	2 cut(s)	186, 350
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	350, 445
BpmI	CTGGAG	2 cut(s)	68, 171
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 91
Bse3DI	GCAATG	2 cut(s)	22, 119
BseDI	CCNNGG	2 cut(s)	129, 471
BseLI	CCNNNNNNNGG	2 cut(s)	88, 91
BseMI	GCAATG	2 cut(s)	22, 119
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	3 cut(s)	14, 172, 700
BshFI	GGCC	2 cut(s)	95, 775
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	88, 91
BsmAI	GTCTC	2 cut(s)	127, 150
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	95, 775
BsoBI	CYCGRG	1 cut(s)	683
Bsp143I	GATC	1 cut(s)	583
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	2 cut(s)	110, 126
BspANI	GGCC	2 cut(s)	95, 775
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	186, 350
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	591
BsrDI	GCAATG	2 cut(s)	22, 119
BssECI	CCNNGG	2 cut(s)	129, 471
BssMI	GATC	1 cut(s)	583
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 471
Bst4CI	ACNGT	4 cut(s)	319, 331, 518, 764
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	309, 464
BstDSI	CCRYGG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	1 cut(s)	586
BstMAI	GTCTC	2 cut(s)	127, 150
BstMBI	GATC	1 cut(s)	583
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	140, 763
BstV1I	GCAGC	3 cut(s)	14, 172, 700
BsuRI	GGCC	2 cut(s)	95, 775
BtgI	CCRYGG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 760
CfoI	GCGC	1 cut(s)	730
Cfr13I	GGNCC	2 cut(s)	349, 532
CseI	GACGC	3 cut(s)	45, 290, 493
Csp6I	GTAC	2 cut(s)	33, 71
CviAII	CATG	4 cut(s)	178, 472, 620, 694
CviQI	GTAC	2 cut(s)	33, 71
DdeI	CTNAG	2 cut(s)	309, 464
DpnI	GATC	1 cut(s)	585
DpnII	GATC	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	129, 471
Eco47I	GGWCC	2 cut(s)	349, 532
Eco88I	CYCGRG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	129, 471
ErhI	CCWWGG	2 cut(s)	129, 471
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	181, 475, 623, 697
FaiI	YATR	7 cut(s)	179, 396, 435, 473, 573, 621, 695
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	4 cut(s)	177, 471, 619, 693
FblI	GTMKAC	2 cut(s)	314, 630
Fnu4HI	GCNGC	3 cut(s)	28, 161, 689
Fsp4HI	GCNGC	3 cut(s)	28, 161, 689
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	3 cut(s)	28, 161, 689
GsuI	CTGGAG	2 cut(s)	68, 171
HaeIII	GGCC	2 cut(s)	95, 775
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	3 cut(s)	45, 290, 493
HhaI	GCGC	1 cut(s)	730
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	181, 475, 623, 697
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	106, 305, 311, 575
HpaII	CCGG	1 cut(s)	374
Hpy166II	GTNNAC	4 cut(s)	73, 315, 631, 702
Hpy188I	TCNGA	3 cut(s)	105, 310, 441
Hpy188III	TCNNGA	4 cut(s)	85, 223, 542, 648
Hpy8I	GTNNAC	4 cut(s)	73, 315, 631, 702
Hpy99I	CGWCG	2 cut(s)	61, 635
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	4 cut(s)	319, 331, 518, 764
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	6 cut(s)	142, 356, 458, 495, 593, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	309, 464
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	181, 475, 623, 697
HspAI	GCGC	1 cut(s)	728
Kzo9I	GATC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	190, 338
Lsp1109I	GCAGC	3 cut(s)	14, 172, 700
LweI	GCATC	2 cut(s)	350, 445
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	1 cut(s)	585
MboI	GATC	1 cut(s)	583
MboII	GAAGA	5 cut(s)	57, 314, 373, 376, 636
MluCI	AATT	4 cut(s)	227, 498, 536, 719
MlyI	GAGTC	2 cut(s)	115, 320
MmeI	TCCRAC	2 cut(s)	38, 316
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	778
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	583
NlaIII	CATG	4 cut(s)	181, 475, 623, 697
NlaIV	GGNNCC	2 cut(s)	186, 350
NmuCI	GTSAC	1 cut(s)	736
PaeR7I	CTCGAG	1 cut(s)	683
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	305, 575
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	29, 162, 690
PleI	GAGTC	2 cut(s)	114, 319
PpsI	GAGTC	2 cut(s)	114, 319
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	186, 350
PspPI	GGNCC	2 cut(s)	349, 532
PspPPI	RGGWCCY	1 cut(s)	349
PspXI	VCTCGAGB	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	2 cut(s)	34, 72
RsaNI	GTAC	2 cut(s)	33, 71
SalI	GTCGAC	1 cut(s)	629
SaqAI	TTAA	1 cut(s)	778
SatI	GCNGC	3 cut(s)	28, 161, 689
Sau3AI	GATC	1 cut(s)	583
Sau96I	GGNCC	2 cut(s)	349, 532
SchI	GAGTC	2 cut(s)	115, 320
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	8 cut(s)	135, 253, 257, 354, 465, 600, 627, 693
SfaNI	GCATC	2 cut(s)	350, 445
SfcI	CTRYAG	2 cut(s)	140, 763
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	2 cut(s)	349, 532
SlaI	CTCGAG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	4 cut(s)	227, 498, 536, 719
SsiI	CCGC	2 cut(s)	110, 126
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	129, 471
TaaI	ACNGT	4 cut(s)	319, 331, 518, 764
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	630, 684
TasI	AATT	4 cut(s)	227, 498, 536, 719
TfiI	GAWTC	2 cut(s)	305, 575
Tru1I	TTAA	1 cut(s)	778
Tru9I	TTAA	1 cut(s)	778
TscAI	CASTG	2 cut(s)	198, 767
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	3 cut(s)	27, 160, 688
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	58, 142
TspRI	CASTG	2 cut(s)	198, 767
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	349, 532
XapI	RAATTY	1 cut(s)	719
XhoI	CTCGAG	1 cut(s)	683
XmiI	GTMKAC	2 cut(s)	314, 630
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.