Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000482.1

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

296 .. 981

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000482.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcgacccttccatccacccattgctgccgtacttactcctcctcatcatcggcgtcgtattcttctgtacacagaagcctccagagtgtggccgtttctccgagtccgcaatgtttcgtctccgccaaggtttctctgcagtctcaatccgtttcgcagctaaatgttgtcagcatgcaagatgtggctccagcagtgaagcctgttgagaatgaaactgctttcaagaaattgaaagacgggttgctgtcagctacgtctgggtctgtggaggaaagtaaagacgcaagtgggtttagttttgaagaatctaagtctactgtgagtattactgtggttggagctaagaacgattttgggaaaactgaagatgatttgaagtcacttcaaagtgttggtcagattataggggaagttctgagacctctcgattatgaacactataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

150

Amino Acids

15.99

Weight (kDa)

5.89

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	2 cut(s)	110, 126
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	34, 72
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	229, 238, 308, 382, 392
AluBI	AGCT	3 cut(s)	163, 257, 347
AluI	AGCT	3 cut(s)	163, 257, 347
Alw26I	GTCTC	3 cut(s)	127, 150, 418
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	27, 160
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
BbvI	GCAGC	2 cut(s)	14, 172
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	2 cut(s)	15, 80
BcoDI	GTCTC	3 cut(s)	127, 150, 418
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	28, 161
BlsI	GCNGC	2 cut(s)	29, 162
BmiI	GGNNCC	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	68, 177
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse3DI	GCAATG	2 cut(s)	22, 119
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	2 cut(s)	22, 119
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	2 cut(s)	14, 172
BshFI	GGCC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	3 cut(s)	127, 150, 418
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	70
BspACI	CCGC	2 cut(s)	110, 126
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	22, 119
BsrGI	TGTACA	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	325, 337
BstACI	GRCGYC	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	315, 348, 422
BstF5I	GGATG	1 cut(s)	14
BstMAI	GTCTC	3 cut(s)	127, 150, 418
BstNSI	RCATGY	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	14, 172
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	179
CseI	GACGC	2 cut(s)	45, 296
Csp6I	GTAC	2 cut(s)	33, 71
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	81, 95, 163, 191, 205, 257, 347
CviKI_1	RGCY	7 cut(s)	81, 95, 163, 191, 205, 257, 347
CviQI	GTAC	2 cut(s)	33, 71
DdeI	CTNAG	3 cut(s)	315, 348, 422
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	179, 410, 438, 447
FatI	CATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	28, 161
Fsp4HI	GCNGC	2 cut(s)	28, 161
GluI	GCNGC	2 cut(s)	28, 161
GsuI	CTGGAG	2 cut(s)	68, 177
HaeIII	GGCC	1 cut(s)	95
HgaI	GACGC	2 cut(s)	45, 296
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	2 cut(s)	106, 311
Hpy166II	GTNNAC	2 cut(s)	73, 321
Hpy188I	TCNGA	3 cut(s)	105, 405, 423
Hpy188III	TCNNGA	3 cut(s)	85, 229, 431
Hpy8I	GTNNAC	2 cut(s)	73, 321
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	325, 337
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	142, 181
HpyF3I	CTNAG	3 cut(s)	315, 348, 422
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	196, 344
LpnPI	CCDG	4 cut(s)	98, 207, 219, 249
Lsp1109I	GCAGC	2 cut(s)	14, 172
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	384
MboII	GAAGA	3 cut(s)	57, 320, 383
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	52, 55, 92, 268, 438
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	29, 162
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	34, 72
RsaNI	GTAC	2 cut(s)	33, 71
SatI	GCNGC	2 cut(s)	28, 161
SchI	GAGTC	1 cut(s)	115
SetI	ASST	6 cut(s)	135, 165, 259, 263, 349, 430
SfcI	CTRYAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	2 cut(s)	110, 126
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	325, 337
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	432
TasI	AATT	1 cut(s)	233
TatI	WGTACW	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	2 cut(s)	27, 160
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	2 cut(s)	231, 453
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.