FvH4_4g23350

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
25857272 .. 25861163
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23350.t1

Sequence Viewer

Length: 1785 bp
ATGGCGACCCTTCCATCCTCCCATTGCTGCCGTACTTACTCGTCATCATCGTCGCTGTCGTATTCGTCTTCCCTATACCGAAGTCTGCAGAGGGTGGCGGTTTCTCCGAGCCCGAAACGTTTCGTCGTCTCGGCCAAGGTTTCTCAATCCGTTTTGCAGCAAAATGGTGTCAGCATGCAAGATGTGGCTCCAGCAGTGAAGCCTGTGGAGAATGAAACTGCTTTCAAGAAATTGAAAGATGGGTTGCTTTCAGCTACGGCTGGATCTGTGGAGGAGAGTAAAGACTCGAGTGGGTTTAGTTTCGAAGAAACTGGGTCCACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCTAAGAAGAAGATATTCCCCGCCCTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAGCACTTTACTATTTTTGGTTATGCTCGGAGTAAGATGACTGATGCAGAGCTAAGAACCATGGTTAGCAAGACACTTACTTGTAGAATTGACCAGAGGGAGAATTGTGGTGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACCACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAACATGAGGGTGGAAGAATTCCTAACCGCCTGTTCTATCTATCTATTCCTCCAAACATATTCATAGACGCTGTTCGCTGTGCAAGCTTGTCTGCTTCATCGGGTAATGGCTGGACTAGAGTTATTGTTGAGAAGCCCTTTGGCCGAGATTCAGAATCATCTGCTGCTTTGACCAAAGCCCTCAAGCAGTACCTAGAAGAAGATCAAATATTCAGGATAGACCACTATCTGGGCAAGGAGCTAGTGGAAAACCTTTCAGTTCTTCGCTTTTCCAATCTTATTTTTGAACCCTTGTGGTCAAGGCAGTACATAAGGAATGTGCAGTTAATATTCTCTGAAGATTTTGGTACTGAAGGGCGTGGAGGGTACTTTGATAATTATGGGATTATAAGGGACATAATGCAGAATCACTTGCTTCAGATATTGGCACTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGATATCAGAAATGAGAAGGTAAAAGTTTTGCGTTCCATGAGGCCGTTGCAACTTGAAAATGTGGTAACAGGGCAATACAAGAGCCATGTCAGAGGAGGTGTTACTTACCCAGCCTACACTGATGACAAAACTGTACCCAAAGGCAGCTTGACTCCAACATTTGCAGCAGCTGCACTCTTCATAGATAATGCCAGATGGGATGGGGTACCTTTCCTAATGAAAGCTGGGAAAGCGTTACATAATAAGAGGGCTGAGATAAGGGTACAGTTCCGGCACGTGCCTGGAAATTTGTATAATCGAAACATTGGAACTGATCTTGATCGTGCTACAAATGAACTTGTAATCCGAGTACAGCCTGATGAAGCTATCTTCCTCAAAATCAATAACAAAGTCCCTGGTTTGGGAATGAGGCTGGACAGGAGTAATTTGAATCTTCATTATGCAGCCAGATATTCAACGGAGATTCCAGATGCTTACGAGAGGCTTCTGCTGGATGCTATTGAAGGAGAAAGAAGACTTTTCATCCGGAGCGATGAACTAGATGCAGCTTGGTCACTCTTCACACCTTTGTTGAAGGAAATAGAAGAGAAAAAGATTATTCCAGAGTACTATCCTTATGGGAGTAGGGGTCCTGTTGGGGCACACTATCTTGCAGCAAGATACAAAGTCCGGTGGGGTGATGTTGGCGTGGAGCAATAA

Protein Analysis

595

Amino Acids

66.94

Weight (kDa)

8.57

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 112 - 290 3.2e-58 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 293 - 587 2.2e-113 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1007
Acc65I GGTACC 1 cut(s) 1291
AccB1I GGYRCC 1 cut(s) 1291
AccB7I CCANNNNNTGG 1 cut(s) 847
AccIII TCCGGA 1 cut(s) 1611
AciI CCGC 3 cut(s) 98, 378, 646
AclI AACGTT 1 cut(s) 118
AclWI GGATC 2 cut(s) 271, 594
AcoI YGGCCR 2 cut(s) 132, 760
AcsI RAATTY 2 cut(s) 636, 1372
AcuI CTGAAG 3 cut(s) 975, 990, 1019
AcvI CACGTG 1 cut(s) 1363
AfiI CCNNNNNNNGG 3 cut(s) 847, 1486, 1487
AgsI TTSAA 9 cut(s) 226, 235, 548, 905, 1142, 1516, 1542, 1589, 1660
AjnI CCWGG 2 cut(s) 1366, 1480
AloI GAACNNNNNNTCC 2 cut(s) 1413, 1445
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 271, 594
AlwNI CAGNNNCTG 1 cut(s) 1256
Ama87I CYCGRG 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 1611
AoxI GGCC 3 cut(s) 132, 760, 1127
ApoI RAATTY 2 cut(s) 636, 1372
Asp700I GAANNNNTTC 2 cut(s) 119, 371
Asp718I GGTACC 1 cut(s) 1291
AspS9I GGNCC 4 cut(s) 315, 352, 535, 1715
AsuHPI GGTGA 2 cut(s) 536, 1775
AsuII TTCGAA 1 cut(s) 303
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 4 cut(s) 315, 352, 535, 1715
BaeGI GKGCMC 1 cut(s) 1729
BanI GGYRCC 1 cut(s) 1291
BanII GRGCYC 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 1363
BbsI GAAGAC 2 cut(s) 60, 1606
BccI CCATC 5 cut(s) 22, 233, 526, 1275, 1280
BceAI ACGGC 3 cut(s) 15, 273, 1114
BciT130I CCWGG 2 cut(s) 1368, 1482
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 4 cut(s) 735, 812, 860, 1625
BfmI CTRYAG 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 1694
Bme1390I CCNGG 2 cut(s) 1368, 1482
Bme18I GGWCC 4 cut(s) 315, 352, 535, 1715
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 4 cut(s) 315, 352, 535, 1715
BmiI GGNNCC 5 cut(s) 189, 316, 353, 1293, 1716
BmrFI CCNGG 2 cut(s) 1368, 1482
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 6 cut(s) 353, 448, 1069, 1546, 1570, 1618
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 60, 1606
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 785
BsaAI YACGTR 1 cut(s) 1363
BsaBI GATNNNNATC 1 cut(s) 1404
BsaJI CCNNGG 3 cut(s) 135, 474, 1480
BsaWI WCCGGW 2 cut(s) 1611, 1755
BsaXI ACNNNNNCTCC 2 cut(s) 1699, 1729
Bsc4I CCNNNNNNNGG 3 cut(s) 847, 1486, 1487
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 2 cut(s) 22, 1062
Bse8I GATNNNNATC 1 cut(s) 1404
BseAI TCCGGA 1 cut(s) 1611
BseBI CCWGG 2 cut(s) 1368, 1482
BseDI CCNNGG 3 cut(s) 135, 474, 1480
BseGI GGATG 5 cut(s) 14, 1084, 1291, 1585, 1608
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 3 cut(s) 847, 1486, 1487
BseMI GCAATG 2 cut(s) 22, 1062
BseMII CTCAG 1 cut(s) 1329
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 287, 1194
BseSI GKGCMC 1 cut(s) 1729
BseYI CCCAGC 2 cut(s) 1195, 1310
BsgI GTGCAG 2 cut(s) 959, 1242
BshFI GGCC 3 cut(s) 134, 762, 1129
BshNI GGYRCC 1 cut(s) 1291
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 1357, 1612, 1756
BslFI GGGAC 3 cut(s) 365, 1025, 1463
BslI CCNNNNNNNGG 3 cut(s) 847, 1486, 1487
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 3 cut(s) 365, 1025, 1463
BsnI GGCC 3 cut(s) 134, 762, 1129
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 113, 1729
Bsp13I TCCGGA 1 cut(s) 1611
Bsp143I GATC 5 cut(s) 263, 586, 820, 1399, 1405
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 3 cut(s) 98, 378, 646
BspANI GGCC 3 cut(s) 134, 762, 1129
BspCNI CTCAG 1 cut(s) 1330
BspEI TCCGGA 1 cut(s) 1611
BspLI GGNNCC 5 cut(s) 189, 316, 353, 1293, 1716
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 2 cut(s) 271, 594
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 1291
BsrDI GCAATG 2 cut(s) 22, 1062
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 135, 474, 1480
BssMI GATC 5 cut(s) 263, 586, 820, 1399, 1405
BssT1I CCWWGG 2 cut(s) 135, 474
Bst2UI CCWGG 2 cut(s) 1368, 1482
Bst4CI ACNGT 4 cut(s) 322, 334, 1219, 1353
Bst6I CTCTTC 3 cut(s) 1268, 1649, 1665
BstAPI GCANNNNNTGC 2 cut(s) 1052, 1256
BstBAI YACGTR 1 cut(s) 1363
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 176, 703
BstDEI CTNAG 4 cut(s) 360, 414, 467, 1338
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 5 cut(s) 14, 1084, 1291, 1585, 1608
BstKTI GATC 5 cut(s) 266, 589, 823, 1402, 1408
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 5 cut(s) 263, 586, 820, 1399, 1405
BstMWI GCNNNNNNNGC 5 cut(s) 386, 702, 1052, 1256, 1316
BstNI CCWGG 2 cut(s) 1368, 1482
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 1366, 1480
BstSFI CTRYAG 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 1729
BstV2I GAAGAC 2 cut(s) 60, 1606
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 3 cut(s) 134, 762, 1129
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 1632
BtsCI GGATG 5 cut(s) 14, 1084, 1291, 1585, 1608
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 201, 318, 1203
Cac8I GCNNGC 2 cut(s) 176, 703
CaiI CAGNNNCTG 1 cut(s) 1256
Cfr13I GGNCC 4 cut(s) 315, 352, 535, 1715
CseI GACGC 1 cut(s) 695
CviAII CATG 5 cut(s) 175, 475, 623, 1123, 1172
DdeI CTNAG 4 cut(s) 360, 414, 467, 1338
DpnI GATC 5 cut(s) 265, 588, 822, 1401, 1407
DpnII GATC 5 cut(s) 263, 586, 820, 1399, 1405
EaeI YGGCCR 2 cut(s) 132, 760
Eam1104I CTCTTC 3 cut(s) 1268, 1649, 1665
EarI CTCTTC 3 cut(s) 1268, 1649, 1665
Eco130I CCWWGG 2 cut(s) 135, 474
Eco24I GRGCYC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 1090
Eco47I GGWCC 4 cut(s) 315, 352, 535, 1715
Eco57I CTGAAG 3 cut(s) 975, 990, 1019
Eco72I CACGTG 1 cut(s) 1363
Eco88I CYCGRG 1 cut(s) 286
EcoO109I RGGNCCY 2 cut(s) 352, 1715
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 1366, 1480
EcoRV GATATC 1 cut(s) 1090
EcoT14I CCWWGG 2 cut(s) 135, 474
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 2 cut(s) 135, 474
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 5 cut(s) 178, 478, 626, 1126, 1175
FaqI GGGAC 3 cut(s) 365, 1025, 1463
FatI CATG 5 cut(s) 174, 474, 622, 1122, 1171
FauI CCCGC 1 cut(s) 385
FokI GGATG 4 cut(s) 1091, 1298, 1592, 1595
FriOI GRGCYC 1 cut(s) 113
FspBI CTAG 4 cut(s) 735, 812, 860, 1625
GsaI CCCAGC 2 cut(s) 1199, 1314
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 3 cut(s) 134, 762, 1129
HapII CCGG 3 cut(s) 1357, 1612, 1756
HgaI GACGC 1 cut(s) 695
Hin1II CATG 5 cut(s) 178, 478, 626, 1126, 1175
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 8 cut(s) 284, 578, 767, 773, 1024, 1237, 1516, 1549
HpaII CCGG 3 cut(s) 1357, 1612, 1756
HphI GGTGA 2 cut(s) 536, 1775
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 8 cut(s) 108, 444, 772, 955, 1038, 1094, 1178, 1433
Hpy188III TCNNGA 7 cut(s) 226, 545, 832, 1403, 1553, 1612, 1688
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 2 cut(s) 55, 128
HpyAV CCTTC 5 cut(s) 20, 965, 1096, 1583, 1654
HpyCH4III ACNGT 4 cut(s) 322, 334, 1219, 1353
HpyCH4IV ACGT 2 cut(s) 118, 1362
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 702, 1052, 1256, 1316
HpyF3I CTNAG 4 cut(s) 360, 414, 467, 1338
HpySE526I ACGT 2 cut(s) 118, 1362
Hsp92II CATG 5 cut(s) 178, 478, 626, 1126, 1175
Kpn2I TCCGGA 1 cut(s) 1611
KpnI GGTACC 1 cut(s) 1295
Kzo9I GATC 5 cut(s) 263, 586, 820, 1399, 1405
LmnI GCTCC 5 cut(s) 193, 341, 856, 1614, 1777
LweI GCATC 6 cut(s) 353, 448, 1069, 1546, 1570, 1618
MaeI CTAG 4 cut(s) 735, 812, 860, 1625
MaeII ACGT 2 cut(s) 118, 1362
MaeIII GTNAC 4 cut(s) 1150, 1186, 1320, 1638
MalI GATC 5 cut(s) 265, 588, 822, 1401, 1407
MboI GATC 5 cut(s) 263, 586, 820, 1399, 1405
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 113, 1729
MluCI AATT 8 cut(s) 230, 501, 517, 539, 636, 994, 1372, 1510
MlyI GAGTC 2 cut(s) 278, 1231
MmeI TCCRAC 2 cut(s) 319, 1265
MroI TCCGGA 1 cut(s) 1611
MroXI GAANNNNTTC 2 cut(s) 119, 371
MseI TTAA 1 cut(s) 944
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 2 cut(s) 601, 1256
MspI CCGG 3 cut(s) 1357, 1612, 1756
MspR9I CCNGG 2 cut(s) 1368, 1482
MvaI CCWGG 2 cut(s) 1368, 1482
MwoI GCNNNNNNNGC 5 cut(s) 386, 702, 1052, 1256, 1316
NcoI CCATGG 1 cut(s) 474
NdeII GATC 5 cut(s) 263, 586, 820, 1399, 1405
NlaIII CATG 5 cut(s) 178, 478, 626, 1126, 1175
NlaIV GGNNCC 5 cut(s) 189, 316, 353, 1293, 1716
NmeAIII GCCGAG 2 cut(s) 110, 788
NmuCI GTSAC 1 cut(s) 1638
NspI RCATGY 1 cut(s) 178
NspV TTCGAA 1 cut(s) 303
PaeI GCATGC 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 56
PdmI GAANNNNTTC 2 cut(s) 119, 371
PfeI GAWTC 6 cut(s) 578, 767, 773, 1024, 1516, 1549
PflMI CCANNNNNTGG 1 cut(s) 847
PleI GAGTC 2 cut(s) 278, 1231
PmaCI CACGTG 1 cut(s) 1363
PmlI CACGTG 1 cut(s) 1363
PpsI GAGTC 2 cut(s) 278, 1231
Ppu21I YACGTR 1 cut(s) 1363
PpuMI RGGWCCY 2 cut(s) 352, 1715
PsiI TTATAA 1 cut(s) 1007
Psp1406I AACGTT 1 cut(s) 118
Psp5II RGGWCCY 2 cut(s) 352, 1715
Psp6I CCWGG 2 cut(s) 1366, 1480
PspCI CACGTG 1 cut(s) 1363
PspFI CCCAGC 2 cut(s) 1195, 1310
PspGI CCWGG 2 cut(s) 1366, 1480
PspN4I GGNNCC 5 cut(s) 189, 316, 353, 1293, 1716
PspPI GGNCC 4 cut(s) 315, 352, 535, 1715
PspPPI RGGWCCY 2 cut(s) 352, 1715
PspXI VCTCGAGB 1 cut(s) 286
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 1 cut(s) 263
PvuII CAGCTG 2 cut(s) 601, 1256
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 1 cut(s) 944
Sau3AI GATC 5 cut(s) 263, 586, 820, 1399, 1405
Sau96I GGNCC 4 cut(s) 315, 352, 535, 1715
ScaI AGTACT 1 cut(s) 1694
SchI GAGTC 2 cut(s) 278, 1231
ScrFI CCNGG 2 cut(s) 1368, 1482
SduI GDGCHC 2 cut(s) 113, 1729
SfaNI GCATC 6 cut(s) 353, 448, 1069, 1546, 1570, 1618
SfcI CTRYAG 1 cut(s) 86
Sfr274I CTCGAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 4 cut(s) 315, 352, 535, 1715
SlaI CTCGAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 286, 800
SmoI CTYRAG 2 cut(s) 286, 800
SphI GCATGC 1 cut(s) 178
Sse9I AATT 8 cut(s) 230, 501, 517, 539, 636, 994, 1372, 1510
SsiI CCGC 3 cut(s) 98, 378, 646
SspI AATATT 2 cut(s) 828, 948
SspMI CTAG 4 cut(s) 735, 812, 860, 1625
StyD4I CCNGG 2 cut(s) 1366, 1480
StyI CCWWGG 2 cut(s) 135, 474
TaaI ACNGT 4 cut(s) 322, 334, 1219, 1353
TaiI ACGT 2 cut(s) 121, 1365
TaqI TCGA 3 cut(s) 287, 303, 1384
TasI AATT 8 cut(s) 230, 501, 517, 539, 636, 994, 1372, 1510
TatI WGTACW 3 cut(s) 924, 1435, 1692
TfiI GAWTC 6 cut(s) 578, 767, 773, 1024, 1516, 1549
Tru1I TTAA 1 cut(s) 944
Tru9I TTAA 1 cut(s) 944
TscAI CASTG 3 cut(s) 201, 325, 1210
TseFI GTSAC 1 cut(s) 1638
Tsp45I GTSAC 1 cut(s) 1638
TspGWI ACGGA 2 cut(s) 139, 1559
TspRI CASTG 3 cut(s) 201, 325, 1210
Van91I CCANNNNNTGG 1 cut(s) 847
VpaK11BI GGWCC 4 cut(s) 315, 352, 535, 1715
XapI RAATTY 2 cut(s) 636, 1372
XceI RCATGY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 286
XmnI GAANNNNTTC 2 cut(s) 119, 371
XspI CTAG 4 cut(s) 735, 812, 860, 1625
ZrmI AGTACT 1 cut(s) 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.