Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

40420452 .. 40421743

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTTGCTGGAGGAGGGGCAAAATCAGCAGCCTATGTTCTCTTACTTGTTAATCTCGTTATCTTCTTCATTGTGACTGTCATAGCTGCATGGGCAATGAACCATGGGATCCAAAGGTCTCGTGAAACAGCATCTGTTTTGTCCATACCATTGCGCATTTTTCCAATATACTTCCCATTGGGGAATATGGCAACCGGTTTCTTTCTGATCTTCTCCCTCATTGCCGGTGTTGTTGGAATCGCCACCTCACTTACCGGACTTCATAACGTTTTTCAATGGGATGGCCCCAGTTTACACACAGCTGCTGCCTCTTCTCTTGTATCTTGGTCCCTCACTCTTCTTGCCATGGGATTGGCTTGTAAAGAGATTGAACTTGGTTGGACAACTGGGAACTTGCGTACTTTGGAGACCATGACCATAATTGTGAGTGCAACTCAATTGTTTTCTACTTGTGCAATCCAAGCAGCTGGAGTTGAAGTGGCTATTGCAGAACAAAGGGATCGGACTGGAGCAAGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

173

Amino Acids

18.4

Weight (kDa)

8.8

Isoelectric Point (pI)

24.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AWPM-19	PF05512	16 - 156	9.4e-56	AWPM-19-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	3 cut(s)	103, 116, 507
AfaI	GTAC	1 cut(s)	400
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	275, 371, 476
AluBI	AGCT	3 cut(s)	86, 302, 467
AluI	AGCT	3 cut(s)	86, 302, 467
Alw26I	GTCTC	2 cut(s)	123, 401
AlwI	GGATC	3 cut(s)	103, 116, 507
AlwNI	CAGNNNCTG	2 cut(s)	134, 305
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	5 cut(s)	29, 86, 302, 305, 464
AsiGI	ACCGGT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	284, 327
AvaII	GGWCC	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	120
BbvI	GCAGC	5 cut(s)	41, 73, 289, 292, 476
BccI	CCATC	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	123, 401
BisI	GCNGC	5 cut(s)	30, 87, 303, 306, 465
BlsI	GCNGC	5 cut(s)	31, 88, 304, 307, 466
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	284, 327
BmiI	GGNNCC	3 cut(s)	110, 286, 329
BmrI	ACTGGG	2 cut(s)	282, 396
BmsI	GCATC	1 cut(s)	140
BmuI	ACTGGG	2 cut(s)	282, 396
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	2 cut(s)	30, 489
BsaI	GGTCTC	2 cut(s)	123, 401
BsaJI	CCNNGG	2 cut(s)	103, 345
BsaWI	WCCGGW	2 cut(s)	194, 254
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse118I	RCCGGY	2 cut(s)	194, 224
Bse1I	ACTGG	3 cut(s)	288, 391, 511
Bse3DI	GCAATG	3 cut(s)	102, 149, 219
BseDI	CCNNGG	2 cut(s)	103, 345
BseGI	GGATG	1 cut(s)	286
BseMI	GCAATG	3 cut(s)	102, 149, 219
BseNI	ACTGG	3 cut(s)	288, 391, 511
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	5 cut(s)	41, 73, 289, 292, 476
BshFI	GGCC	1 cut(s)	285
BshTI	ACCGGT	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	195, 225, 255
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	123, 401
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	2 cut(s)	123, 401
Bsp143I	GATC	3 cut(s)	108, 207, 499
Bsp19I	CCATGG	2 cut(s)	103, 345
BspANI	GGCC	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	110, 286, 329
BspPI	GGATC	3 cut(s)	103, 116, 507
BspTNI	GGTCTC	2 cut(s)	123, 401
BsrDI	GCAATG	3 cut(s)	102, 149, 219
BsrFI	RCCGGY	2 cut(s)	194, 224
BsrI	ACTGG	3 cut(s)	288, 391, 511
BssAI	RCCGGY	2 cut(s)	194, 224
BssECI	CCNNGG	2 cut(s)	103, 345
BssMI	GATC	3 cut(s)	108, 207, 499
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	103, 345
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	316, 342
BstDSI	CCRYGG	2 cut(s)	103, 345
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	111, 210, 502
BstMAI	GTCTC	2 cut(s)	123, 401
BstMBI	GATC	3 cut(s)	108, 207, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 92, 461
BstV1I	GCAGC	5 cut(s)	41, 73, 289, 292, 476
BstX2I	RGATCY	1 cut(s)	108
BstXI	CCANNNNNNTGG	2 cut(s)	352, 467
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	103, 345
BtsCI	GGATG	1 cut(s)	286
CaiI	CAGNNNCTG	2 cut(s)	134, 305
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	194, 224
Cfr13I	GGNCC	2 cut(s)	284, 327
Csp6I	GTAC	1 cut(s)	399
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	4 cut(s)	90, 104, 346, 412
CviJI	RGCY	7 cut(s)	32, 86, 285, 302, 356, 467, 482
CviKI_1	RGCY	7 cut(s)	32, 86, 285, 302, 356, 467, 482
CviQI	GTAC	1 cut(s)	399
DpnI	GATC	3 cut(s)	110, 209, 501
DpnII	GATC	3 cut(s)	108, 207, 499
Eam1104I	CTCTTC	2 cut(s)	316, 342
EarI	CTCTTC	2 cut(s)	316, 342
Eco130I	CCWWGG	2 cut(s)	103, 345
Eco31I	GGTCTC	2 cut(s)	123, 401
Eco47I	GGWCC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	103, 345
ErhI	CCWWGG	2 cut(s)	103, 345
FaeI	CATG	4 cut(s)	93, 107, 349, 415
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	89, 103, 345, 411
Fnu4HI	GCNGC	5 cut(s)	30, 87, 303, 306, 465
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	5 cut(s)	30, 87, 303, 306, 465
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	5 cut(s)	30, 87, 303, 306, 465
GsuI	CTGGAG	2 cut(s)	30, 489
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	3 cut(s)	195, 225, 255
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	93, 107, 349, 415
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	3 cut(s)	195, 225, 255
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	2 cut(s)	207, 504
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	2 cut(s)	267, 517
HpyCH4V	TGCA	4 cut(s)	89, 431, 455, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 92, 461
HpySE526I	ACGT	2 cut(s)	267, 517
Hsp92II	CATG	4 cut(s)	93, 107, 349, 415
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	108, 207, 499
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	7 cut(s)	208, 238, 268, 301, 372, 453, 492
Lsp1109I	GCAGC	5 cut(s)	41, 73, 289, 292, 476
LweI	GCATC	1 cut(s)	140
MaeII	ACGT	2 cut(s)	267, 517
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	110, 209, 501
MboI	GATC	3 cut(s)	108, 207, 499
MboII	GAAGA	5 cut(s)	55, 58, 202, 303, 329
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	1 cut(s)	108
MluCI	AATT	2 cut(s)	420, 437
MmeI	TCCRAC	2 cut(s)	214, 359
MnlI	CCTC	6 cut(s)	5, 8, 227, 256, 319, 341
MseI	TTAA	2 cut(s)	51, 520
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	302, 467
MspI	CCGG	3 cut(s)	195, 225, 255
MunI	CAATTG	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	26, 92, 461
NcoI	CCATGG	2 cut(s)	103, 345
NdeII	GATC	3 cut(s)	108, 207, 499
NlaIII	CATG	4 cut(s)	93, 107, 349, 415
NlaIV	GGNNCC	3 cut(s)	110, 286, 329
NmuCI	GTSAC	1 cut(s)	73
NsbI	TGCGCA	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	31, 88, 304, 307, 466
Psp1406I	AACGTT	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	110, 286, 329
PspPI	GGNCC	2 cut(s)	284, 327
PstNI	CAGNNNCTG	2 cut(s)	134, 305
PsuI	RGATCY	1 cut(s)	108
PvuII	CAGCTG	2 cut(s)	302, 467
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	51, 520
SatI	GCNGC	5 cut(s)	30, 87, 303, 306, 465
Sau3AI	GATC	3 cut(s)	108, 207, 499
Sau96I	GGNCC	2 cut(s)	284, 327
SetI	ASST	7 cut(s)	88, 119, 248, 270, 304, 469, 520
SfaNI	GCATC	1 cut(s)	140
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	2 cut(s)	420, 437
StyI	CCWWGG	2 cut(s)	103, 345
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	2 cut(s)	270, 520
TasI	AATT	2 cut(s)	420, 437
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	51, 520
Tru9I	TTAA	2 cut(s)	51, 520
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	5 cut(s)	29, 86, 302, 305, 464
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	58, 113, 251
VpaK11BI	GGWCC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.