Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Reverse (-)

51889877 .. 51893765

Gene Structure 3889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG297100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGACTGATGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACCACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAGCATGAGGCTGGAAGAATTCCTAACCGCCTGTTCTATCTATCTATTCCTCCAAACATCTTCATAGATGCGGTTCGCTGTGCAAGCTTGTCTGCTTCATCTGGTAATGGCTGGACTAGAGTTATTGTTGAGAAACCATTTGGCCGAGATTCAGAATCATCTGCTGCTTTGACCAAAGCCCTCAAGCAGTACCTAGAAGAGGATCAGATATTCAGGATAGACCACTATCTGGGCAAGGAGCTAGTGGAAAACCTTTCAGTTCTTCGCTTTTCCAATCTTATTTTTGAACCCTTGTGGTCAAGGCAGTACATAAGGAATGTGCAGTTAATATTCTCTGAAGATTTTGGCACTGAAGGGCGTGGAGGGTACTTTGATAATTATGGGATAATAAGAGACATAATGCAGAATCACTTGCTTCAAATACTGGCGCTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGATATTAGAAATGAAAAGGTCAAAGTTTTGCGTTCCATGAGGCCATTGCAACTTGAAAATGTGGTAACAGGGCAATACAAGAGCCATGTCAGAGGAGGTATTACTTACCCGGCCTACACTGATGACAAAACTGTACCCAAAGACAGTTTGACTCCAACATTTGCAGCAGCTGCACTCTTCATAGACAATGCAAGATGGGATGGGGTGCCTTTCCTAATGAAAGCTGGGAAAGCATTACATAATAAGAGGGCTGAGATAAGGTTACAGTTTCGGCATGTTCCTGGAAATTTGTATAATCGAAACATTGGAACAGATCTTGATCGTGCTACAAATGAACTTGTAATCCGAGTACAGCCTGATGAAGCTATCTTTCTGAAGATCAACAACAAAGTCCCTGGTTTGGGAATGCGGTTGGACAGGAGTAATTTGAATCTTCATTATGCAGCCAGATATTCAACTGAGATTCCAGATGCGTACGAGAGACTTCTGCTGGATGCTATTGAAGGGGAAAGGAGACTGTTCATCCGGAGTGATGAACTAGATGCAGCTTGGGCACTCTTCACACCTTTGTTGAAAGAGATAGAAGAGAAAAAGATTATTCCAGAGTACTATCCTTACGGAAGTAGGGGTCCTGTTGGGGCACACTATCTTGCAGCAAGATACAAAGTCCGGTGGGGTGATGTTGGTCTGGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

444

Amino Acids

51.02

Weight (kDa)

6.58

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	1 - 140	1.3e-38	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	143 - 437	2.3e-113	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccIII	TCCGGA	1 cut(s)	1161
AciI	CCGC	3 cut(s)	196, 239, 1045
AclWI	GGATC	2 cut(s)	144, 378
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	186, 922
AcuI	CTGAAG	3 cut(s)	525, 540, 1031
AfaI	GTAC	7 cut(s)	359, 476, 536, 771, 987, 1112, 1244
AfiI	CCNNNNNNNGG	4 cut(s)	367, 397, 1036, 1037
AgsI	TTSAA	8 cut(s)	98, 455, 587, 692, 1066, 1092, 1139, 1210
AjnI	CCWGG	2 cut(s)	916, 1030
AloI	GAACNNNNNNTCC	2 cut(s)	963, 995
AluBI	AGCT	8 cut(s)	16, 151, 255, 409, 806, 860, 1001, 1184
AluI	AGCT	8 cut(s)	16, 151, 255, 409, 806, 860, 1001, 1184
Alw26I	GTCTC	3 cut(s)	555, 1111, 1144
AlwI	GGATC	2 cut(s)	144, 378
AlwNI	CAGNNNCTG	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	1161
AoxI	GGCC	3 cut(s)	310, 677, 747
ApeKI	GCWGC	7 cut(s)	332, 800, 803, 806, 1079, 1181, 1289
ApoI	RAATTY	2 cut(s)	186, 922
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	2 cut(s)	85, 1265
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	1325
AvaII	GGWCC	2 cut(s)	85, 1265
BaeGI	GKGCMC	2 cut(s)	1192, 1279
BanI	GGYRCC	1 cut(s)	841
BbvI	GCAGC	7 cut(s)	319, 793, 812, 815, 1091, 1193, 1301
BccI	CCATC	3 cut(s)	76, 825, 830
BciT130I	CCWGG	2 cut(s)	918, 1032
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	3 cut(s)	555, 1111, 1144
BfaI	CTAG	4 cut(s)	285, 362, 410, 1175
BfoI	RGCGCY	1 cut(s)	599
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	7 cut(s)	333, 801, 804, 807, 1080, 1182, 1290
BlsI	GCNGC	7 cut(s)	334, 802, 805, 808, 1081, 1183, 1291
BmcAI	AGTACT	1 cut(s)	1244
Bme1390I	CCNGG	3 cut(s)	746, 918, 1032
Bme18I	GGWCC	2 cut(s)	85, 1265
BmgT120I	GGNCC	2 cut(s)	85, 1265
BmiI	GGNNCC	2 cut(s)	843, 1266
BmrFI	CCNGG	3 cut(s)	746, 918, 1032
BmsI	GCATC	5 cut(s)	226, 619, 1096, 1120, 1168
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	954
BsaJI	CCNNGG	2 cut(s)	24, 1030
BsaWI	WCCGGW	2 cut(s)	1161, 1305
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 397, 1036, 1037
Bse1I	ACTGG	1 cut(s)	597
Bse3DI	GCAATG	2 cut(s)	612, 680
Bse8I	GATNNNNATC	1 cut(s)	954
BseAI	TCCGGA	1 cut(s)	1161
BseBI	CCWGG	2 cut(s)	918, 1032
BseDI	CCNNGG	2 cut(s)	24, 1030
BseGI	GGATG	4 cut(s)	634, 841, 1135, 1158
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	4 cut(s)	367, 397, 1036, 1037
BseMI	GCAATG	2 cut(s)	612, 680
BseMII	CTCAG	2 cut(s)	879, 1086
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	744
BseSI	GKGCMC	2 cut(s)	1192, 1279
BseXI	GCAGC	7 cut(s)	319, 793, 812, 815, 1091, 1193, 1301
BseYI	CCCAGC	1 cut(s)	860
BsgI	GTGCAG	2 cut(s)	509, 792
BshFI	GGCC	3 cut(s)	312, 679, 749
BshNI	GGYRCC	1 cut(s)	841
BsiSI	CCGG	3 cut(s)	746, 1162, 1306
BsiWI	CGTACG	1 cut(s)	1110
BslFI	GGGAC	1 cut(s)	1013
BslI	CCNNNNNNNGG	4 cut(s)	367, 397, 1036, 1037
BsmAI	GTCTC	3 cut(s)	555, 1111, 1144
BsmFI	GGGAC	1 cut(s)	1013
BsmI	GAATGC	1 cut(s)	1047
BsnI	GGCC	3 cut(s)	312, 679, 749
Bsp1286I	GDGCHC	2 cut(s)	1192, 1279
Bsp13I	TCCGGA	1 cut(s)	1161
Bsp143I	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	196, 239, 1045
BspANI	GGCC	3 cut(s)	312, 679, 749
BspCNI	CTCAG	2 cut(s)	880, 1087
BspEI	TCCGGA	1 cut(s)	1161
BspLI	GGNNCC	2 cut(s)	843, 1266
BspPI	GGATC	2 cut(s)	144, 378
BspT107I	GGYRCC	1 cut(s)	841
BsrDI	GCAATG	2 cut(s)	612, 680
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	2 cut(s)	24, 1030
BssMI	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	918, 1032
Bst4CI	ACNGT	5 cut(s)	71, 769, 782, 903, 1155
Bst6I	CTCTTC	4 cut(s)	360, 818, 1199, 1215
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	17, 888, 1095
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	4 cut(s)	634, 841, 1135, 1158
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	139, 373, 952, 958, 1017, 1330
BstMAI	GTCTC	3 cut(s)	555, 1111, 1144
BstMBI	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 602, 806, 866, 1187
BstNI	CCWGG	2 cut(s)	918, 1032
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	3 cut(s)	744, 916, 1030
BstSLI	GKGCMC	2 cut(s)	1192, 1279
BstV1I	GCAGC	7 cut(s)	319, 793, 812, 815, 1091, 1193, 1301
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuRI	GGCC	3 cut(s)	312, 679, 749
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	634, 841, 1135, 1158
BtsIMutI	CAGTG	2 cut(s)	516, 753
Cac8I	GCNNGC	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	806
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	85, 1265
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	7 cut(s)	358, 475, 535, 770, 986, 1111, 1243
CviAII	CATG	5 cut(s)	25, 173, 673, 722, 911
CviQI	GTAC	7 cut(s)	358, 475, 535, 770, 986, 1111, 1243
DdeI	CTNAG	3 cut(s)	17, 888, 1095
DpnI	GATC	6 cut(s)	138, 372, 951, 957, 1016, 1329
DpnII	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	4 cut(s)	360, 818, 1199, 1215
EarI	CTCTTC	4 cut(s)	360, 818, 1199, 1215
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	85, 1265
Eco57I	CTGAAG	3 cut(s)	525, 540, 1031
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	1265
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	916, 1030
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	28, 176, 676, 725, 914
FaqI	GGGAC	1 cut(s)	1013
FatI	CATG	5 cut(s)	24, 172, 672, 721, 910
Fnu4HI	GCNGC	7 cut(s)	333, 801, 804, 807, 1080, 1182, 1290
FokI	GGATG	4 cut(s)	641, 848, 1142, 1145
Fsp4HI	GCNGC	7 cut(s)	333, 801, 804, 807, 1080, 1182, 1290
FspBI	CTAG	4 cut(s)	285, 362, 410, 1175
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	7 cut(s)	333, 801, 804, 807, 1080, 1182, 1290
GsaI	CCCAGC	1 cut(s)	864
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	312, 679, 749
HapII	CCGG	3 cut(s)	746, 1162, 1306
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	5 cut(s)	28, 176, 676, 725, 914
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	7 cut(s)	128, 317, 323, 574, 787, 1066, 1099
HpaII	CCGG	3 cut(s)	746, 1162, 1306
HphI	GGTGA	1 cut(s)	1325
Hpy188I	TCNGA	6 cut(s)	322, 375, 505, 728, 983, 1011
Hpy188III	TCNNGA	7 cut(s)	95, 382, 953, 1103, 1162, 1238, 1325
HpyAV	CCTTC	2 cut(s)	515, 1133
HpyCH4III	ACNGT	5 cut(s)	71, 769, 782, 903, 1155
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 602, 806, 866, 1187
HpyF3I	CTNAG	3 cut(s)	17, 888, 1095
Hsp92II	CATG	5 cut(s)	28, 176, 676, 725, 914
HspAI	GCGC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	1161
Kzo9I	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
LmnI	GCTCC	2 cut(s)	169, 406
Lsp1109I	GCAGC	7 cut(s)	319, 793, 812, 815, 1091, 1193, 1301
LweI	GCATC	5 cut(s)	226, 619, 1096, 1120, 1168
MaeI	CTAG	4 cut(s)	285, 362, 410, 1175
MaeIII	GTNAC	2 cut(s)	700, 897
MalI	GATC	6 cut(s)	138, 372, 951, 957, 1016, 1329
MboI	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	2 cut(s)	1192, 1279
MluCI	AATT	6 cut(s)	51, 89, 186, 544, 922, 1060
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	2 cut(s)	815, 1029
MroI	TCCGGA	1 cut(s)	1161
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	151, 806
MspI	CCGG	3 cut(s)	746, 1162, 1306
MspR9I	CCNGG	3 cut(s)	746, 918, 1032
Mva1269I	GAATGC	1 cut(s)	1047
MvaI	CCWGG	2 cut(s)	918, 1032
MwoI	GCNNNNNNNGC	5 cut(s)	252, 602, 806, 866, 1187
NciI	CCSGG	1 cut(s)	746
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
NlaIII	CATG	5 cut(s)	28, 176, 676, 725, 914
NlaIV	GGNNCC	2 cut(s)	843, 1266
NmeAIII	GCCGAG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	914
PctI	GAATGC	1 cut(s)	1047
PfeI	GAWTC	6 cut(s)	128, 317, 323, 574, 1066, 1099
Pfl23II	CGTACG	1 cut(s)	1110
PflMI	CCANNNNNTGG	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	916
PkrI	GCNGC	7 cut(s)	334, 802, 805, 808, 1081, 1183, 1291
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PpuMI	RGGWCCY	1 cut(s)	1265
Psp5II	RGGWCCY	1 cut(s)	1265
Psp6I	CCWGG	2 cut(s)	916, 1030
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	916, 1030
PspLI	CGTACG	1 cut(s)	1110
PspN4I	GGNNCC	2 cut(s)	843, 1266
PspPI	GGNCC	2 cut(s)	85, 1265
PspPPI	RGGWCCY	1 cut(s)	1265
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	2 cut(s)	151, 806
RsaI	GTAC	7 cut(s)	359, 476, 536, 771, 987, 1112, 1244
RsaNI	GTAC	7 cut(s)	358, 475, 535, 770, 986, 1111, 1243
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	7 cut(s)	333, 801, 804, 807, 1080, 1182, 1290
Sau3AI	GATC	6 cut(s)	136, 370, 949, 955, 1014, 1327
Sau96I	GGNCC	2 cut(s)	85, 1265
ScaI	AGTACT	1 cut(s)	1244
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	3 cut(s)	746, 918, 1032
SduI	GDGCHC	2 cut(s)	1192, 1279
SfaNI	GCATC	5 cut(s)	226, 619, 1096, 1120, 1168
SinI	GGWCC	2 cut(s)	85, 1265
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	6 cut(s)	51, 89, 186, 544, 922, 1060
SsiI	CCGC	3 cut(s)	196, 239, 1045
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	4 cut(s)	285, 362, 410, 1175
StyD4I	CCNGG	3 cut(s)	744, 916, 1030
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	5 cut(s)	71, 769, 782, 903, 1155
TaqI	TCGA	1 cut(s)	934
TasI	AATT	6 cut(s)	51, 89, 186, 544, 922, 1060
TatI	WGTACW	3 cut(s)	474, 985, 1242
TfiI	GAWTC	6 cut(s)	128, 317, 323, 574, 1066, 1099
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	523, 760
TseI	GCWGC	7 cut(s)	332, 800, 803, 806, 1079, 1181, 1289
TspGWI	ACGGA	1 cut(s)	1269
TspRI	CASTG	2 cut(s)	523, 760
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	85, 1265
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	186, 922
XceI	RCATGY	1 cut(s)	914
XspI	CTAG	4 cut(s)	285, 362, 410, 1175
ZrmI	AGTACT	1 cut(s)	1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.