Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Reverse (-)

66075573 .. 66080499

Gene Structure 4927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGACCCTTCCATCCACCCATTGCTGCCGTACTTACTCCTCCTCATCATCGGCGTCGTATTCTTCCGTACACAGAAGCCTCCAGAGGGTGGTCGTTTCTCCGAGTCCGCAATGTTTCATCTCCGCCAAGGTTTCTCTGCAGTCTCAATCCGTTTCGCAGCAAAATGTTGTCAGCATGCAAGATGTGGCTCCAGCAGTGAAGCCTGTTGAGAATGAAACTGCTTTCAAGAAATTGAAAGACGGGTTGCTGTCAGCTACGTCTGGGTCTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTAGTTTTGAAGAATCTGAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCAAAGAAGAAGATATTCCCGGCTCTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGATGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACTACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAACATGAGGTGGTCGACGATGTTGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACAATGCCCTCGAGCAGCTCATGGAGTTCACATCTCATCTCTACAAATTTCTTGCGCCTGATGTGACTTTGATAACAGATTTTTGCCACTGTAGAGTTTGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

261

Amino Acids

29.19

Weight (kDa)

5.99

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	113 - 210	1.5e-24	Glucose-6-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	320, 636
AciI	CCGC	2 cut(s)	110, 126
AclWI	GGATC	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	725
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	34, 72
AfiI	CCNNNNNNNGG	2 cut(s)	88, 91
AgsI	TTSAA	5 cut(s)	229, 238, 308, 551, 654
AluBI	AGCT	4 cut(s)	257, 469, 604, 697
AluI	AGCT	4 cut(s)	257, 469, 604, 697
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	597
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	3 cut(s)	27, 160, 694
ApoI	RAATTY	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	736
AspS9I	GGNCC	2 cut(s)	355, 538
AsuC2I	CCSGG	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	355, 538
BbvI	GCAGC	3 cut(s)	14, 172, 706
BccI	CCATC	2 cut(s)	22, 529
BceAI	ACGGC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	140, 769
BisI	GCNGC	3 cut(s)	28, 161, 695
BlsI	GCNGC	3 cut(s)	29, 162, 696
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	355, 538
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	355, 538
BmiI	GGNNCC	2 cut(s)	192, 356
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	356, 451
BpmI	CTGGAG	2 cut(s)	68, 177
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 91
Bse3DI	GCAATG	2 cut(s)	22, 119
BseDI	CCNNGG	2 cut(s)	129, 477
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	88, 91
BseMI	GCAATG	2 cut(s)	22, 119
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	3 cut(s)	14, 172, 706
BshFI	GGCC	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	88, 91
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	781
BsoBI	CYCGRG	1 cut(s)	689
Bsp143I	GATC	1 cut(s)	589
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	2 cut(s)	110, 126
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	192, 356
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	597
BsrDI	GCAATG	2 cut(s)	22, 119
BssECI	CCNNGG	2 cut(s)	129, 477
BssMI	GATC	1 cut(s)	589
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 477
Bst4CI	ACNGT	4 cut(s)	325, 337, 524, 770
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	315, 470
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	1 cut(s)	592
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	2 cut(s)	140, 769
BstV1I	GCAGC	3 cut(s)	14, 172, 706
BsuRI	GGCC	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 766
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	355, 538
CseI	GACGC	3 cut(s)	45, 296, 499
Csp6I	GTAC	2 cut(s)	33, 71
CviAII	CATG	4 cut(s)	178, 478, 626, 700
CviJI	RGCY	9 cut(s)	81, 191, 205, 257, 383, 469, 604, 697, 781
CviKI_1	RGCY	9 cut(s)	81, 191, 205, 257, 383, 469, 604, 697, 781
CviQI	GTAC	2 cut(s)	33, 71
DdeI	CTNAG	2 cut(s)	315, 470
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	129, 477
Eco47I	GGWCC	2 cut(s)	355, 538
Eco88I	CYCGRG	1 cut(s)	689
EcoO109I	RGGNCCY	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	129, 477
ErhI	CCWWGG	2 cut(s)	129, 477
FaeI	CATG	4 cut(s)	181, 481, 629, 703
FaiI	YATR	7 cut(s)	179, 402, 441, 479, 579, 627, 701
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	177, 477, 625, 699
FblI	GTMKAC	2 cut(s)	320, 636
Fnu4HI	GCNGC	3 cut(s)	28, 161, 695
Fsp4HI	GCNGC	3 cut(s)	28, 161, 695
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	3 cut(s)	28, 161, 695
GsuI	CTGGAG	2 cut(s)	68, 177
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	3 cut(s)	45, 296, 499
HhaI	GCGC	1 cut(s)	736
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	181, 481, 629, 703
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	4 cut(s)	106, 311, 317, 581
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	4 cut(s)	73, 321, 637, 708
Hpy188I	TCNGA	3 cut(s)	105, 316, 447
Hpy188III	TCNNGA	4 cut(s)	85, 229, 548, 654
Hpy8I	GTNNAC	4 cut(s)	73, 321, 637, 708
Hpy99I	CGWCG	2 cut(s)	61, 641
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	4 cut(s)	325, 337, 524, 770
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	7 cut(s)	142, 181, 362, 464, 501, 599, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	315, 470
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	181, 481, 629, 703
HspAI	GCGC	1 cut(s)	734
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	2 cut(s)	196, 344
Lsp1109I	GCAGC	3 cut(s)	14, 172, 706
LweI	GCATC	2 cut(s)	356, 451
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	5 cut(s)	57, 320, 379, 382, 642
MluCI	AATT	4 cut(s)	233, 504, 542, 725
MlyI	GAGTC	2 cut(s)	115, 326
MmeI	TCCRAC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	4 cut(s)	181, 481, 629, 703
NlaIV	GGNNCC	2 cut(s)	192, 356
NmuCI	GTSAC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	311, 581
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	29, 162, 696
PleI	GAGTC	2 cut(s)	114, 325
PpsI	GAGTC	2 cut(s)	114, 325
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	192, 356
PspPI	GGNCC	2 cut(s)	355, 538
PspPPI	RGGWCCY	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	2 cut(s)	34, 72
RsaNI	GTAC	2 cut(s)	33, 71
SalI	GTCGAC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	784
SatI	GCNGC	3 cut(s)	28, 161, 695
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	2 cut(s)	355, 538
SchI	GAGTC	2 cut(s)	115, 326
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	8 cut(s)	135, 259, 263, 360, 471, 606, 633, 699
SfaNI	GCATC	2 cut(s)	356, 451
SfcI	CTRYAG	2 cut(s)	140, 769
Sfr274I	CTCGAG	1 cut(s)	689
SinI	GGWCC	2 cut(s)	355, 538
SlaI	CTCGAG	1 cut(s)	689
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	4 cut(s)	233, 504, 542, 725
SsiI	CCGC	2 cut(s)	110, 126
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	129, 477
TaaI	ACNGT	4 cut(s)	325, 337, 524, 770
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	636, 690
TasI	AATT	4 cut(s)	233, 504, 542, 725
TfiI	GAWTC	2 cut(s)	311, 581
Tru1I	TTAA	1 cut(s)	784
Tru9I	TTAA	1 cut(s)	784
TscAI	CASTG	2 cut(s)	204, 773
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	3 cut(s)	27, 160, 694
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	109, 231
TspGWI	ACGGA	2 cut(s)	58, 142
TspRI	CASTG	2 cut(s)	204, 773
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	355, 538
XapI	RAATTY	1 cut(s)	725
XceI	RCATGY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	689
XmiI	GTMKAC	2 cut(s)	320, 636
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.