Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

13028236 .. 13031689

Gene Structure 3454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCGACCCTTCCATCCACCCATTGCTGCCGTACTTACTCCTCCTCATCGTCGGCGTCGTATTCTTCCGTACACAGAAGCCTCCAGAGGGTGGCCGTTTCTCCGAGTCCGAAACGTTTCATCTCTGCCAAGGTTTCTCTGCAGTCTCAATCCGTTTCGCAGCAAAATGTTGTCAGCATGCAAGATGTGGCTCCAGCAGTGAAGCCTGTTGAGAATGAAACTGCTTTCAAGAAATTGAAAGATGGGTTGCTTTCAGCTACGTCCGGGTCTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTAGTTTCGAAGAATCTGAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCTAAGAAGAAGATATTCCCGGCTCTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGATGCGGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACCACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAACATGAGGCTGGAAGAATGCCTAACCGCCTGTTCTATCTATCTATTCCTCCAAACATATTCATAGATGCGGTTCGCTGTGCAAGCTTGTCTGCTTCATCTGGTAATGGCTGGACTAGAGTTATTGTTGAGAAACCATTTGGCCGAGATTCAGAATCATCTGCTGCTTTGACCAAAGCCCTCAAGCAGTACCTAGAAGAGGATCAGATATTCAGGATAGACCACTATCTGGGCAAGGAGCTAGTGGAAAACCTTTCAGTTCTTCGCTTTTCCAATCTTATTTTTGAACCCTTGTGGTCAAGGCAGTACATAAGGAATGTGCAGTTAATATTCTCTGAAGATTTTGGCACTGAAGGGCGTGGAGGGTACTTTGATAATTATGGGATAATAAGAGACATAATGCAGAATCACTTGCTTCAGATACTGGCGCTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGATATTAGAAATGAAAAGGTCAAAGTTTTGCGTTCCATGAGGCCATTGCAACTTGAAAATGTGGTAACAGGGCAATACAAGAGCCATGTCAGAGGAGGTATTACTTACCCGGCCTACACTGATGACAAAACTGTACCCAAAGACAGTTTGACTCCAACATTTGCAGCAGCTGCACTCTTCATAGACAATGCAAGATGGGATGGGGTGCCTTTCCTAATGAAAGCTGGGAAAGCATTACATAATAAGAGGTCTGTTCAATTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

452

Amino Acids

50.45

Weight (kDa)

8.46

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	113 - 291	8.5e-59	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	294 - 446	2.1e-66	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1294
AccB7I	CCANNNNNTGG	2 cut(s)	91, 850
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	3 cut(s)	464, 649, 692
AclI	AACGTT	1 cut(s)	115
AclWI	GGATC	2 cut(s)	597, 831
AcoI	YGGCCR	2 cut(s)	93, 763
AcuI	CTGAAG	3 cut(s)	978, 993, 1022
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	6 cut(s)	34, 72, 812, 929, 989, 1224
AfiI	CCNNNNNNNGG	4 cut(s)	88, 91, 820, 850
AgsI	TTSAA	6 cut(s)	229, 238, 551, 908, 1145, 1346
AluBI	AGCT	7 cut(s)	257, 469, 604, 708, 862, 1259, 1313
AluI	AGCT	7 cut(s)	257, 469, 604, 708, 862, 1259, 1313
Alw26I	GTCTC	2 cut(s)	150, 1008
AlwI	GGATC	2 cut(s)	597, 831
AlwNI	CAGNNNCTG	2 cut(s)	1045, 1259
AoxI	GGCC	4 cut(s)	93, 763, 1130, 1200
ApeKI	GCWGC	6 cut(s)	27, 160, 785, 1253, 1256, 1259
Asp700I	GAANNNNTTC	2 cut(s)	116, 374
AspLEI	GCGC	1 cut(s)	1051
AspS9I	GGNCC	2 cut(s)	355, 538
AsuC2I	CCSGG	3 cut(s)	265, 380, 1199
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	355, 538
BanI	GGYRCC	1 cut(s)	1294
BbvI	GCAGC	6 cut(s)	14, 172, 772, 1246, 1265, 1268
BccI	CCATC	5 cut(s)	22, 236, 529, 1278, 1283
BceAI	ACGGC	2 cut(s)	15, 80
BcnI	CCSGG	3 cut(s)	265, 380, 1199
BcoDI	GTCTC	2 cut(s)	150, 1008
BfaI	CTAG	3 cut(s)	738, 815, 863
BfmI	CTRYAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	1052
BisI	GCNGC	6 cut(s)	28, 161, 786, 1254, 1257, 1260
BlsI	GCNGC	6 cut(s)	29, 162, 787, 1255, 1258, 1261
Bme1390I	CCNGG	3 cut(s)	265, 380, 1199
Bme18I	GGWCC	2 cut(s)	355, 538
BmgT120I	GGNCC	2 cut(s)	355, 538
BmiI	GGNNCC	3 cut(s)	192, 356, 1296
BmrFI	CCNGG	3 cut(s)	265, 380, 1199
BmsI	GCATC	4 cut(s)	356, 451, 679, 1072
BpmI	CTGGAG	2 cut(s)	68, 177
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	3 cut(s)	265, 380, 1199
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 91, 820, 850
Bse1I	ACTGG	1 cut(s)	1050
Bse3DI	GCAATG	3 cut(s)	22, 1065, 1133
BseDI	CCNNGG	2 cut(s)	129, 477
BseGI	GGATG	3 cut(s)	14, 1087, 1294
BseLI	CCNNNNNNNGG	4 cut(s)	88, 91, 820, 850
BseMI	GCAATG	3 cut(s)	22, 1065, 1133
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	1050
BseRI	GAGGAG	3 cut(s)	31, 34, 1197
BseXI	GCAGC	6 cut(s)	14, 172, 772, 1246, 1265, 1268
BseYI	CCCAGC	1 cut(s)	1313
BsgI	GTGCAG	2 cut(s)	962, 1245
BshFI	GGCC	4 cut(s)	95, 765, 1132, 1202
BshNI	GGYRCC	1 cut(s)	1294
BsiSI	CCGG	3 cut(s)	264, 380, 1199
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	88, 91, 820, 850
BsmAI	GTCTC	2 cut(s)	150, 1008
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	4 cut(s)	95, 765, 1132, 1202
Bsp119I	TTCGAA	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	589, 823
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	464, 649, 692
BspANI	GGCC	4 cut(s)	95, 765, 1132, 1202
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	192, 356, 1296
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	2 cut(s)	597, 831
BspT104I	TTCGAA	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	1294
BsrDI	GCAATG	3 cut(s)	22, 1065, 1133
BsrI	ACTGG	1 cut(s)	1050
BssECI	CCNNGG	2 cut(s)	129, 477
BssMI	GATC	2 cut(s)	589, 823
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 477
Bst4CI	ACNGT	5 cut(s)	325, 337, 524, 1222, 1235
Bst6I	CTCTTC	2 cut(s)	813, 1271
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	1259
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	179, 706
BstDEI	CTNAG	3 cut(s)	315, 363, 470
BstDSI	CCRYGG	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	818
BstF5I	GGATG	3 cut(s)	14, 1087, 1294
BstH2I	RGCGCY	1 cut(s)	1052
BstHHI	GCGC	1 cut(s)	1051
BstKTI	GATC	2 cut(s)	592, 826
BstMAI	GTCTC	2 cut(s)	150, 1008
BstMBI	GATC	2 cut(s)	589, 823
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 705, 1055, 1259, 1319
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	263, 378, 1197
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	6 cut(s)	14, 172, 772, 1246, 1265, 1268
BsuRI	GGCC	4 cut(s)	95, 765, 1132, 1202
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	14, 1087, 1294
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 969, 1206
Cac8I	GCNNGC	2 cut(s)	179, 706
CaiI	CAGNNNCTG	2 cut(s)	1045, 1259
CfoI	GCGC	1 cut(s)	1051
Cfr13I	GGNCC	2 cut(s)	355, 538
CseI	GACGC	3 cut(s)	45, 296, 499
Csp6I	GTAC	6 cut(s)	33, 71, 811, 928, 988, 1223
CviAII	CATG	5 cut(s)	178, 478, 626, 1126, 1175
CviQI	GTAC	6 cut(s)	33, 71, 811, 928, 988, 1223
DdeI	CTNAG	3 cut(s)	315, 363, 470
DpnI	GATC	2 cut(s)	591, 825
DpnII	GATC	2 cut(s)	589, 823
EaeI	YGGCCR	2 cut(s)	93, 763
Eam1104I	CTCTTC	2 cut(s)	813, 1271
EarI	CTCTTC	2 cut(s)	813, 1271
Eco130I	CCWWGG	2 cut(s)	129, 477
Eco47I	GGWCC	2 cut(s)	355, 538
Eco57I	CTGAAG	3 cut(s)	978, 993, 1022
EcoNI	CCTNNNNNAGG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	129, 477
ErhI	CCWWGG	2 cut(s)	129, 477
FaeI	CATG	5 cut(s)	181, 481, 629, 1129, 1178
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	5 cut(s)	177, 477, 625, 1125, 1174
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	6 cut(s)	28, 161, 786, 1254, 1257, 1260
FokI	GGATG	2 cut(s)	1094, 1301
Fsp4HI	GCNGC	6 cut(s)	28, 161, 786, 1254, 1257, 1260
FspBI	CTAG	3 cut(s)	738, 815, 863
GlaI	GCGC	1 cut(s)	1050
GluI	GCNGC	6 cut(s)	28, 161, 786, 1254, 1257, 1260
GsaI	CCCAGC	1 cut(s)	1317
GsuI	CTGGAG	2 cut(s)	68, 177
HaeII	RGCGCY	1 cut(s)	1052
HaeIII	GGCC	4 cut(s)	95, 765, 1132, 1202
HapII	CCGG	3 cut(s)	264, 380, 1199
HgaI	GACGC	3 cut(s)	45, 296, 499
HhaI	GCGC	1 cut(s)	1051
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	181, 481, 629, 1129, 1178
Hin6I	GCGC	1 cut(s)	1049
HinP1I	GCGC	1 cut(s)	1049
HindIII	AAGCTT	1 cut(s)	706
HinfI	GANTC	8 cut(s)	106, 311, 317, 581, 770, 776, 1027, 1240
HpaII	CCGG	3 cut(s)	264, 380, 1199
Hpy166II	GTNNAC	2 cut(s)	73, 321
Hpy188I	TCNGA	9 cut(s)	105, 111, 316, 447, 775, 828, 958, 1041, 1181
Hpy188III	TCNNGA	4 cut(s)	85, 229, 548, 835
Hpy8I	GTNNAC	2 cut(s)	73, 321
Hpy99I	CGWCG	2 cut(s)	55, 61
HpyAV	CCTTC	2 cut(s)	20, 968
HpyCH4III	ACNGT	5 cut(s)	325, 337, 524, 1222, 1235
HpyCH4IV	ACGT	2 cut(s)	115, 260
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 705, 1055, 1259, 1319
HpyF3I	CTNAG	3 cut(s)	315, 363, 470
HpySE526I	ACGT	2 cut(s)	115, 260
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	181, 481, 629, 1129, 1178
HspAI	GCGC	1 cut(s)	1049
Kzo9I	GATC	2 cut(s)	589, 823
LmnI	GCTCC	4 cut(s)	196, 344, 466, 859
Lsp1109I	GCAGC	6 cut(s)	14, 172, 772, 1246, 1265, 1268
LweI	GCATC	4 cut(s)	356, 451, 679, 1072
MaeI	CTAG	3 cut(s)	738, 815, 863
MaeII	ACGT	2 cut(s)	115, 260
MaeIII	GTNAC	1 cut(s)	1153
MalI	GATC	2 cut(s)	591, 825
MboI	GATC	2 cut(s)	589, 823
MluCI	AATT	5 cut(s)	233, 504, 542, 997, 1346
MlyI	GAGTC	3 cut(s)	115, 326, 1234
MmeI	TCCRAC	2 cut(s)	322, 1268
MroXI	GAANNNNTTC	2 cut(s)	116, 374
MseI	TTAA	1 cut(s)	947
MspA1I	CMGCKG	2 cut(s)	604, 1259
MspI	CCGG	3 cut(s)	264, 380, 1199
MspR9I	CCNGG	3 cut(s)	265, 380, 1199
Mva1269I	GAATGC	1 cut(s)	645
MwoI	GCNNNNNNNGC	5 cut(s)	389, 705, 1055, 1259, 1319
NciI	CCSGG	3 cut(s)	265, 380, 1199
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	2 cut(s)	589, 823
NlaIII	CATG	5 cut(s)	181, 481, 629, 1129, 1178
NlaIV	GGNNCC	3 cut(s)	192, 356, 1296
NmeAIII	GCCGAG	1 cut(s)	791
NspI	RCATGY	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	645
PdmI	GAANNNNTTC	2 cut(s)	116, 374
PfeI	GAWTC	5 cut(s)	311, 581, 770, 776, 1027
PflMI	CCANNNNNTGG	2 cut(s)	91, 850
PkrI	GCNGC	6 cut(s)	29, 162, 787, 1255, 1258, 1261
PleI	GAGTC	3 cut(s)	114, 325, 1234
PpsI	GAGTC	3 cut(s)	114, 325, 1234
PpuMI	RGGWCCY	1 cut(s)	355
Psp1406I	AACGTT	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	1313
PspN4I	GGNNCC	3 cut(s)	192, 356, 1296
PspPI	GGNCC	2 cut(s)	355, 538
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	2 cut(s)	1045, 1259
PvuII	CAGCTG	2 cut(s)	604, 1259
RsaI	GTAC	6 cut(s)	34, 72, 812, 929, 989, 1224
RsaNI	GTAC	6 cut(s)	33, 71, 811, 928, 988, 1223
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	6 cut(s)	28, 161, 786, 1254, 1257, 1260
Sau3AI	GATC	2 cut(s)	589, 823
Sau96I	GGNCC	2 cut(s)	355, 538
SchI	GAGTC	3 cut(s)	115, 326, 1234
ScrFI	CCNGG	3 cut(s)	265, 380, 1199
SfaNI	GCATC	4 cut(s)	356, 451, 679, 1072
SfcI	CTRYAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	2 cut(s)	355, 538
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	5 cut(s)	233, 504, 542, 997, 1346
SsiI	CCGC	3 cut(s)	464, 649, 692
SspI	AATATT	1 cut(s)	951
SspMI	CTAG	3 cut(s)	738, 815, 863
StyD4I	CCNGG	3 cut(s)	263, 378, 1197
StyI	CCWWGG	2 cut(s)	129, 477
TaaI	ACNGT	5 cut(s)	325, 337, 524, 1222, 1235
TaiI	ACGT	2 cut(s)	118, 263
TaqI	TCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	233, 504, 542, 997, 1346
TatI	WGTACW	1 cut(s)	927
TfiI	GAWTC	5 cut(s)	311, 581, 770, 776, 1027
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TscAI	CASTG	3 cut(s)	204, 976, 1213
TseI	GCWGC	6 cut(s)	27, 160, 785, 1253, 1256, 1259
TspDTI	ATGAA	7 cut(s)	109, 231, 673, 708, 1116, 1258, 1322
TspGWI	ACGGA	2 cut(s)	58, 142
TspRI	CASTG	3 cut(s)	204, 976, 1213
Van91I	CCANNNNNTGG	2 cut(s)	91, 850
VpaK11BI	GGWCC	2 cut(s)	355, 538
XagI	CCTNNNNNAGG	1 cut(s)	818
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	2 cut(s)	116, 374
XspI	CTAG	3 cut(s)	738, 815, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.