pycom13g10710

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
7218999 .. 7220125
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10710.4

Sequence Viewer

Length: 765 bp
ATGCAGAATCACTTGCTTCAGATACTGGCTCTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGACATCAGAAACGAGAAGGTTAAAGTTTTACGCTCTATGAGGCCACTACAACTTGAAAATGTGGTCACAGGGCAATACAAGAGTCATGTTAGAGGTGGTATTACTTACCCGGCATACACTGATGACAAGACGGTACCCAAAGACAGCTTGACTCCAACATTTGCGGCAGCTGCTCTCTTCATAGACAATGCAAGATGGGATGGGGTGCCTTTCTTGATGAAGGCCGGGAAAGCATTACATAATAAGAGGGCTGAGATAAGGGTACAGTTTCGACATGTGCCTGGAAACTTGTATCGAAATATTGGAACGGATCTTGATCGCACGACAAATGAGCTTGTTATCCGAGTACAGCCTGATGAAGCTATTGTCCTGACGATCAATAACAAAGTCCCTGGTCTTGGAATGAGGTTGGACAGGAGCAATCTAAATCTCCACTACGCAGCCAGATATTCAAATGAGATTCCGGATGCTTATGAGAGGCTTCTGCTGGATGCTATTGAAGGGGAAAGGAGGCTGTTTATTCGGAGTGATGAACTTGATGCAGCTTGGGCACTCTTCACACCCTTATTGAAAGAGATTGAAGAGAAGAAGGTTATTCCCGAATACTATCCTTATGGAAGCAGAGGTCCTGTCGGGGCACACTATCTTGCAGCAAGATACAAAGTCCGGTGGGGTGATGTTGGTGTGGAGGTGTGA

Protein Analysis

255

Amino Acids

28.89

Weight (kDa)

7.89

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 2 cut(s) 202, 274
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 387
AfaI GTAC 3 cut(s) 204, 333, 417
AfiI CCNNNNNNNGG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 5 cut(s) 125, 522, 569, 640, 650
AjnI CCWGG 2 cut(s) 349, 460
AluBI AGCT 5 cut(s) 216, 239, 403, 431, 614
AluI AGCT 5 cut(s) 216, 239, 403, 431, 614
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 25
Aor13HI TCCGGA 1 cut(s) 532
AoxI GGCC 2 cut(s) 110, 291
ApeKI GCWGC 5 cut(s) 236, 239, 509, 611, 719
Asp718I GGTACC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 695
AsuC2I CCSGG 2 cut(s) 179, 295
AsuHPI GGTGA 1 cut(s) 755
AvaII GGWCC 1 cut(s) 695
BaeGI GKGCMC 2 cut(s) 622, 709
BanI GGYRCC 2 cut(s) 202, 274
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 5 cut(s) 226, 248, 521, 623, 731
BccI CCATC 2 cut(s) 258, 263
BciT130I CCWGG 2 cut(s) 351, 462
BcnI CCSGG 2 cut(s) 179, 295
BisI GCNGC 6 cut(s) 234, 237, 240, 510, 612, 720
BlsI GCNGC 6 cut(s) 235, 238, 241, 511, 613, 721
Bme1390I CCNGG 4 cut(s) 179, 295, 351, 462
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 1 cut(s) 695
BmiI GGNNCC 2 cut(s) 204, 276
BmrFI CCNGG 4 cut(s) 179, 295, 351, 462
BmsI GCATC 4 cut(s) 52, 526, 550, 598
BpiI GAAGAC 1 cut(s) 75
BpuMI CCSGG 2 cut(s) 179, 295
BsaBI GATNNNNATC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 460
BsaWI WCCGGW 2 cut(s) 532, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 384
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 2 cut(s) 351, 462
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 4 cut(s) 67, 274, 541, 565
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 622, 709
BseXI GCAGC 5 cut(s) 226, 248, 521, 623, 731
BshFI GGCC 2 cut(s) 112, 293
BshNI GGYRCC 2 cut(s) 202, 274
BsiSI CCGG 4 cut(s) 179, 294, 533, 736
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 2 cut(s) 112, 293
Bsp1286I GDGCHC 2 cut(s) 622, 709
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 3 cut(s) 379, 385, 444
BspACI CCGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 112, 293
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 204, 276
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 2 cut(s) 202, 274
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 3 cut(s) 379, 385, 444
Bst2UI CCWGG 2 cut(s) 351, 462
Bst4CI ACNGT 2 cut(s) 202, 336
Bst6I CTCTTC 3 cut(s) 251, 629, 645
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 4 cut(s) 67, 274, 541, 565
BstKTI GATC 3 cut(s) 382, 388, 447
BstMBI GATC 3 cut(s) 379, 385, 444
BstMWI GCNNNNNNNGC 4 cut(s) 35, 239, 299, 617
BstNI CCWGG 2 cut(s) 351, 462
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 4 cut(s) 177, 293, 349, 460
BstSLI GKGCMC 2 cut(s) 622, 709
BstV1I GCAGC 5 cut(s) 226, 248, 521, 623, 731
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 2 cut(s) 112, 293
BtsCI GGATG 4 cut(s) 67, 274, 541, 565
BtsIMutI CAGTG 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 695
Csp6I GTAC 3 cut(s) 203, 332, 416
CviAII CATG 2 cut(s) 155, 344
CviQI GTAC 3 cut(s) 203, 332, 416
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 381, 387, 446
DpnII GATC 3 cut(s) 379, 385, 444
Eam1104I CTCTTC 3 cut(s) 251, 629, 645
EarI CTCTTC 3 cut(s) 251, 629, 645
Eco47I GGWCC 1 cut(s) 695
EcoO109I RGGNCCY 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 349, 460
FaeI CATG 2 cut(s) 158, 347
FaiI YATR 8 cut(s) 107, 156, 184, 251, 309, 345, 543, 684
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 154, 343
Fnu4HI GCNGC 6 cut(s) 234, 237, 240, 510, 612, 720
FokI GGATG 4 cut(s) 74, 281, 548, 572
Fsp4HI GCNGC 6 cut(s) 234, 237, 240, 510, 612, 720
GluI GCNGC 6 cut(s) 234, 237, 240, 510, 612, 720
HaeIII GGCC 2 cut(s) 112, 293
HapII CCGG 4 cut(s) 179, 294, 533, 736
Hin1II CATG 2 cut(s) 158, 347
HinfI GANTC 4 cut(s) 7, 151, 220, 529
HpaII CCGG 4 cut(s) 179, 294, 533, 736
HphI GGTGA 1 cut(s) 755
Hpy188I TCNGA 4 cut(s) 21, 77, 413, 594
Hpy188III TCNNGA 5 cut(s) 283, 383, 439, 533, 668
HpyAV CCTTC 4 cut(s) 79, 283, 563, 652
HpyCH4III ACNGT 2 cut(s) 202, 336
HpyCH4V TGCA 6 cut(s) 4, 38, 65, 260, 611, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 239, 299, 617
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 2 cut(s) 158, 347
Kpn2I TCCGGA 1 cut(s) 532
KpnI GGTACC 1 cut(s) 206
Kzo9I GATC 3 cut(s) 379, 385, 444
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 5 cut(s) 226, 248, 521, 623, 731
LweI GCATC 4 cut(s) 52, 526, 550, 598
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 381, 387, 446
MboI GATC 3 cut(s) 379, 385, 444
MboII GAAGA 5 cut(s) 80, 238, 616, 662, 667
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 622, 709
MlyI GAGTC 2 cut(s) 160, 214
MmeI TCCRAC 2 cut(s) 248, 459
MnlI CCTC 8 cut(s) 102, 155, 309, 468, 540, 573, 686, 751
MroI TCCGGA 1 cut(s) 532
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 4 cut(s) 179, 294, 533, 736
MspR9I CCNGG 4 cut(s) 179, 295, 351, 462
MvaI CCWGG 2 cut(s) 351, 462
MwoI GCNNNNNNNGC 4 cut(s) 35, 239, 299, 617
NciI CCSGG 2 cut(s) 179, 295
NdeII GATC 3 cut(s) 379, 385, 444
NlaIII CATG 2 cut(s) 158, 347
NlaIV GGNNCC 2 cut(s) 204, 276
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 347
PciI ACATGT 1 cut(s) 343
PfeI GAWTC 2 cut(s) 7, 529
PkrI GCNGC 6 cut(s) 235, 238, 241, 511, 613, 721
PleI GAGTC 2 cut(s) 159, 214
PpsI GAGTC 2 cut(s) 159, 214
PpuMI RGGWCCY 1 cut(s) 695
PscI ACATGT 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 349, 460
PspGI CCWGG 2 cut(s) 349, 460
PspN4I GGNNCC 2 cut(s) 204, 276
PspPI GGNCC 1 cut(s) 695
PspPPI RGGWCCY 1 cut(s) 695
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 3 cut(s) 204, 333, 417
RsaNI GTAC 3 cut(s) 203, 332, 416
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 6 cut(s) 234, 237, 240, 510, 612, 720
Sau3AI GATC 3 cut(s) 379, 385, 444
Sau96I GGNCC 1 cut(s) 695
SchI GAGTC 2 cut(s) 160, 214
ScrFI CCNGG 4 cut(s) 179, 295, 351, 462
SduI GDGCHC 2 cut(s) 622, 709
SfaNI GCATC 4 cut(s) 52, 526, 550, 598
SinI GGWCC 1 cut(s) 695
SsiI CCGC 1 cut(s) 233
SspI AATATT 1 cut(s) 370
StyD4I CCNGG 4 cut(s) 177, 293, 349, 460
TaaI ACNGT 2 cut(s) 202, 336
TaqI TCGA 2 cut(s) 340, 364
TatI WGTACW 1 cut(s) 415
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 7, 529
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 5 cut(s) 236, 239, 509, 611, 719
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 4 cut(s) 238, 302, 441, 615
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 695
XceI RCATGY 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.