Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Reverse (-)

12189611 .. 12193178

Gene Structure 3568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGACCCTTCCATCCACCCATTGCTGCCGTACTTACTCCTCCTCATCATCGGCGTCGTATTCTTCCGTACACAGAAGCCTCCAGAGGGTGGCCGTTTCTCCGAGTCCGCAATGTTTCGTCTCCGCCAAGGTTTCTCTGCAGTCTCAATCTGTTTCGCAGCAAAATGTTGTCAGCATGCAAGATGTGGCTCCAGCAGTGAAGCCTGTTGAGAATGAAACTGCTTTCAAGAAATTGAAAGACGGGTTGCTGTCAGCTACGTCTGGGTCTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTGGTTTTGAAGAATCTAAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCAAAGAAGAAGATATTCCCGGTTCTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGATGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACTACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAACATGAGGCTGGAAGAATTCCTAACCGCCTGTTCTATCTATCTGTTCCTCCAAACATATTCATAGATGCGGTTCGCTGTGCAAGCTTGTCTGCTTCATCTGGTAATGGCTGGACTAGAGTTATTGTTGAGAAACCATTTGGCCGAGATTCAGAATCATCTGCTGCTTTGACCAAAGCCCTCAAGCAGTACCTAGAAGAGGATCAGATATTCAGGATAGACCACTATCTGGGCAAGGAGCTAGTGGAAAACCTTTCAGTTCTTCGCTTTTCCAATCTTATTTTTGAACCCTTGTGGTCAAGGCAGTACATAAGGAATGTGCAGTTAATATTCTCCGAAGATTTTGGCACTGAAGGGCGTGGAGGGTACTTTGATAATTATGGGATAATAAGAGACATAATGCAGAATCACTTGCTTCAAATACTGGCACTCTTTGCAATGGAAACCCCTGTCAGACACATACTTGGATTTAGCCAAAAGGCCAAGAACATAGATGTGTGTTTCCAGACATGGGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

380

Amino Acids

42.66

Weight (kDa)

7.97

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	113 - 291	1e-57	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	294 - 359	9.3e-30	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	91, 850
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	4 cut(s)	110, 126, 649, 692
AclWI	GGATC	2 cut(s)	597, 831
AcoI	YGGCCR	2 cut(s)	93, 763
AcsI	RAATTY	1 cut(s)	639
AcuI	CTGAAG	1 cut(s)	993
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	5 cut(s)	34, 72, 812, 929, 989
AfiI	CCNNNNNNNGG	5 cut(s)	88, 91, 820, 850, 1132
AgsI	TTSAA	6 cut(s)	229, 238, 308, 551, 908, 1040
AluBI	AGCT	5 cut(s)	257, 469, 604, 708, 862
AluI	AGCT	5 cut(s)	257, 469, 604, 708, 862
Alw26I	GTCTC	3 cut(s)	127, 150, 1008
AlwI	GGATC	2 cut(s)	597, 831
AoxI	GGCC	3 cut(s)	93, 763, 1101
ApeKI	GCWGC	3 cut(s)	27, 160, 785
ApoI	RAATTY	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	355, 538
AsuC2I	CCSGG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	355, 538
BbvI	GCAGC	3 cut(s)	14, 172, 772
BccI	CCATC	2 cut(s)	22, 529
BceAI	ACGGC	2 cut(s)	15, 80
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	3 cut(s)	127, 150, 1008
BfaI	CTAG	3 cut(s)	738, 815, 863
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	3 cut(s)	28, 161, 786
BlsI	GCNGC	3 cut(s)	29, 162, 787
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	355, 538
BmgT120I	GGNCC	2 cut(s)	355, 538
BmiI	GGNNCC	2 cut(s)	192, 356
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	3 cut(s)	356, 451, 679
BpmI	CTGGAG	2 cut(s)	68, 177
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 477
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 91, 820, 850, 1132
Bse1I	ACTGG	1 cut(s)	1050
Bse3DI	GCAATG	3 cut(s)	22, 119, 1065
BseDI	CCNNGG	2 cut(s)	129, 477
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	5 cut(s)	88, 91, 820, 850, 1132
BseMI	GCAATG	3 cut(s)	22, 119, 1065
BseNI	ACTGG	1 cut(s)	1050
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	3 cut(s)	14, 172, 772
BsgI	GTGCAG	1 cut(s)	962
BshFI	GGCC	3 cut(s)	95, 765, 1103
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	5 cut(s)	88, 91, 820, 850, 1132
BsmAI	GTCTC	3 cut(s)	127, 150, 1008
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	95, 765, 1103
Bsp143I	GATC	2 cut(s)	589, 823
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	4 cut(s)	110, 126, 649, 692
BspANI	GGCC	3 cut(s)	95, 765, 1103
BspLI	GGNNCC	2 cut(s)	192, 356
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	2 cut(s)	597, 831
BsrDI	GCAATG	3 cut(s)	22, 119, 1065
BsrI	ACTGG	1 cut(s)	1050
BssECI	CCNNGG	2 cut(s)	129, 477
BssMI	GATC	2 cut(s)	589, 823
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 477
Bst4CI	ACNGT	3 cut(s)	325, 337, 524
Bst6I	CTCTTC	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstC8I	GCNNGC	2 cut(s)	179, 706
BstDEI	CTNAG	2 cut(s)	315, 470
BstDSI	CCRYGG	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	592, 826
BstMAI	GTCTC	3 cut(s)	127, 150, 1008
BstMBI	GATC	2 cut(s)	589, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 1055
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	14, 172, 772
BsuRI	GGCC	3 cut(s)	95, 765, 1103
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 969
Cac8I	GCNNGC	2 cut(s)	179, 706
Cfr13I	GGNCC	2 cut(s)	355, 538
CseI	GACGC	3 cut(s)	45, 296, 499
Csp6I	GTAC	5 cut(s)	33, 71, 811, 928, 988
CviAII	CATG	4 cut(s)	178, 478, 626, 1131
CviQI	GTAC	5 cut(s)	33, 71, 811, 928, 988
DdeI	CTNAG	2 cut(s)	315, 470
DpnI	GATC	2 cut(s)	591, 825
DpnII	GATC	2 cut(s)	589, 823
EaeI	YGGCCR	2 cut(s)	93, 763
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	129, 477
Eco47I	GGWCC	2 cut(s)	355, 538
Eco57I	CTGAAG	1 cut(s)	993
EcoNI	CCTNNNNNAGG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	129, 477
ErhI	CCWWGG	2 cut(s)	129, 477
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	181, 481, 629, 1134
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	177, 477, 625, 1130
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	28, 161, 786
Fsp4HI	GCNGC	3 cut(s)	28, 161, 786
FspBI	CTAG	3 cut(s)	738, 815, 863
GluI	GCNGC	3 cut(s)	28, 161, 786
GsuI	CTGGAG	2 cut(s)	68, 177
HaeIII	GGCC	3 cut(s)	95, 765, 1103
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	3 cut(s)	45, 296, 499
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	181, 481, 629, 1134
HindIII	AAGCTT	1 cut(s)	706
HinfI	GANTC	6 cut(s)	106, 311, 581, 770, 776, 1027
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	73, 321
Hpy188I	TCNGA	6 cut(s)	105, 447, 775, 828, 958, 1076
Hpy188III	TCNNGA	5 cut(s)	85, 229, 548, 835, 1126
Hpy8I	GTNNAC	2 cut(s)	73, 321
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	20, 968
HpyCH4III	ACNGT	3 cut(s)	325, 337, 524
HpyCH4IV	ACGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 1055
HpyF3I	CTNAG	2 cut(s)	315, 470
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	181, 481, 629, 1134
Kzo9I	GATC	2 cut(s)	589, 823
LmnI	GCTCC	3 cut(s)	196, 344, 859
Lsp1109I	GCAGC	3 cut(s)	14, 172, 772
LweI	GCATC	3 cut(s)	356, 451, 679
MaeI	CTAG	3 cut(s)	738, 815, 863
MaeII	ACGT	1 cut(s)	260
MalI	GATC	2 cut(s)	591, 825
MboI	GATC	2 cut(s)	589, 823
MboII	GAAGA	8 cut(s)	57, 320, 379, 382, 648, 830, 875, 971
MluCI	AATT	5 cut(s)	233, 504, 542, 639, 997
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	947
MslI	CAYNNNNRTG	1 cut(s)	1115
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	705, 1055
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	2 cut(s)	589, 823
NlaIII	CATG	4 cut(s)	181, 481, 629, 1134
NlaIV	GGNNCC	2 cut(s)	192, 356
NmeAIII	GCCGAG	1 cut(s)	791
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	5 cut(s)	311, 581, 770, 776, 1027
PflMI	CCANNNNNTGG	2 cut(s)	91, 850
PkrI	GCNGC	3 cut(s)	29, 162, 787
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	192, 356
PspPI	GGNCC	2 cut(s)	355, 538
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	5 cut(s)	34, 72, 812, 929, 989
RsaNI	GTAC	5 cut(s)	33, 71, 811, 928, 988
RseI	CAYNNNNRTG	1 cut(s)	1115
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	3 cut(s)	28, 161, 786
Sau3AI	GATC	2 cut(s)	589, 823
Sau96I	GGNCC	2 cut(s)	355, 538
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	380
SfaNI	GCATC	3 cut(s)	356, 451, 679
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	355, 538
SmiMI	CAYNNNNRTG	1 cut(s)	1115
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	5 cut(s)	233, 504, 542, 639, 997
SsiI	CCGC	4 cut(s)	110, 126, 649, 692
SspI	AATATT	1 cut(s)	951
SspMI	CTAG	3 cut(s)	738, 815, 863
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	129, 477
TaaI	ACNGT	3 cut(s)	325, 337, 524
TaiI	ACGT	1 cut(s)	263
TasI	AATT	5 cut(s)	233, 504, 542, 639, 997
TatI	WGTACW	1 cut(s)	927
TfiI	GAWTC	5 cut(s)	311, 581, 770, 776, 1027
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TscAI	CASTG	2 cut(s)	204, 976
TseI	GCWGC	3 cut(s)	27, 160, 785
TspDTI	ATGAA	3 cut(s)	231, 673, 708
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	204, 976
Van91I	CCANNNNNTGG	2 cut(s)	91, 850
VpaK11BI	GGWCC	2 cut(s)	355, 538
XagI	CCTNNNNNAGG	1 cut(s)	818
XapI	RAATTY	1 cut(s)	639
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	3 cut(s)	738, 815, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.