Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

15746021 .. 15750077

Gene Structure 4057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22760.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTTGAAGAGACTGCAATTACATGAACAGTGCCGGTTACATGATTTGAGCCAAGTCATTGATCACCTGGCACGCCACTGCTTCGCTCCCGATGATTCTCTCGTCTCCAAATCCACTTACTACAACCTCCAACTCGCTAGGGAGGAAATGTGCAGGGAAAGATTACGTTACCTGGAATCCATGGCAATTTATAGCGAGGCAATTGCAATGGTGGAAGACTACAACCAAGGCTGGGGGAACCCTCCTCAGCTGTATGAGACACTTGAGCATCTTATGATCATTGCGGAAGCCACTCAGAAGTTGAGGTTGCCTCTGCTATCTAAAGATGGTGATATACATGAGGAAGAAATTGAAAGTATAATGTCACAATGTTCCTTCGATAGTCCTGGTACCAGTTTTACAACCGGATCAAGTTCTAACTCTCCAACTTATAGTGGTGTAAATAGCAAATTTAGTACAACAAACAGCAATCTTTCTCTCAGTGCTACTCCAGTTGAGGAACCTGGACTTGGAGGCCTTCCCAATTGCTTTCTTGGAATTACACCTGCATATTTATGGAAAACACAGTTCCAACAAATCCCTTTTGACATGGATCTAGCAGAATACCAGCTGTGTCTTTCCGATGAGATTGAGGCTCGTTTGAAGGCTAAATGTGATAAGTTAGCTGATGCTTTTGTAATGGATGACATAGACTGGTCATCATCAGGACAAAGAAATGCAAGTGATGAGTTAGAAGAAAGGGTAAGGTTGATAACTGAGGATCTGGAAGGGAAGGAAGCAGCTTTGAAGGAAGATCTGTATTCAGCAGATAGAAGATTTACTGAATACTACAATGTCTTGGAGCAGATATTGGGAGTTCTTATAAAGCTGGTCAGAAATTTGAAGTTGCAACATCAACACAAATATGATGAACTGCAAAAGGGATTCTTGTGCAAAAGGTGCGAGACCATAGATGCAAAATTAAGGAGCCTGGAGTATGTTCTCCAGCACGCCACTTATTCCAAGGATTCAGTCCCTGCCCTGCATAAAATAAGGAAATACCTTGTTGAAGCTACAAAAGAAGCTTCAATCACACATGATAAAGCGGTCACTCGCCTTCGTGAGTATCAGAGTGTTGATGCCGACTTCAATAAAATTGCAAGGCAGTACCATGATATTGTACAGAAGTTGGAAAATATGCAATGGACGATCCAGCAAGTTGAAATGGACCTCAAACGCCCCCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

410

Amino Acids

47.09

Weight (kDa)

5.29

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS4	PF14735	168 - 302	6.7e-28	HAUS augmin-like complex subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AciI	CCGC	2 cut(s)	284, 1085
AclWI	GGATC	4 cut(s)	415, 600, 768, 1183
AcsI	RAATTY	2 cut(s)	449, 877
AfaI	GTAC	4 cut(s)	391, 457, 1148, 1161
AfiI	CCNNNNNNNGG	2 cut(s)	232, 509
AgsI	TTSAA	9 cut(s)	7, 353, 643, 787, 883, 1049, 1068, 1129, 1202
AjnI	CCWGG	5 cut(s)	66, 171, 385, 502, 969
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	7 cut(s)	250, 610, 665, 782, 868, 1052, 1064
AluI	AGCT	7 cut(s)	250, 610, 665, 782, 868, 1052, 1064
Alw26I	GTCTC	4 cut(s)	4, 109, 251, 938
AlwI	GGATC	4 cut(s)	415, 600, 768, 1183
AlwNI	CAGNNNCTG	1 cut(s)	1016
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	2 cut(s)	449, 877
Asp718I	GGTACC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	1207
AsuHPI	GGTGA	2 cut(s)	56, 341
AvaII	GGWCC	1 cut(s)	1207
BanI	GGYRCC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	5 cut(s)	68, 173, 387, 504, 971
BclI	TGATCA	2 cut(s)	61, 276
BcoDI	GTCTC	4 cut(s)	4, 109, 251, 938
BfaI	CTAG	2 cut(s)	138, 596
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	5 cut(s)	68, 173, 387, 504, 971
Bme18I	GGWCC	1 cut(s)	1207
BmgT120I	GGNCC	1 cut(s)	1207
BmiI	GGNNCC	4 cut(s)	239, 391, 501, 968
BmrFI	CCNGG	5 cut(s)	68, 173, 387, 504, 971
BmsI	GCATC	4 cut(s)	277, 658, 943, 1108
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	3 cut(s)	474, 968, 992
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	938
BsaJI	CCNNGG	3 cut(s)	180, 226, 1002
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 509
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	3 cut(s)	393, 491, 698
Bse3DI	GCAATG	3 cut(s)	213, 279, 1187
BseBI	CCWGG	5 cut(s)	68, 173, 387, 504, 971
BseDI	CCNNGG	3 cut(s)	180, 226, 1002
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	232, 509
BseMI	GCAATG	3 cut(s)	213, 279, 1187
BseMII	CTCAG	4 cut(s)	260, 308, 493, 747
BseNI	ACTGG	3 cut(s)	393, 491, 698
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	516
BshNI	GGYRCC	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	34, 405
BslFI	GGGAC	1 cut(s)	998
BslI	CCNNNNNNNGG	2 cut(s)	232, 509
BsmAI	GTCTC	4 cut(s)	4, 109, 251, 938
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	998
BsnI	GGCC	1 cut(s)	516
Bso31I	GGTCTC	1 cut(s)	938
Bsp1407I	TGTACA	1 cut(s)	1159
Bsp143I	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	284, 1085
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	4 cut(s)	259, 307, 492, 748
BspLI	GGNNCC	4 cut(s)	239, 391, 501, 968
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	4 cut(s)	415, 600, 768, 1183
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	938
BsrDI	GCAATG	3 cut(s)	213, 279, 1187
BsrFI	RCCGGY	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	1159
BsrI	ACTGG	3 cut(s)	393, 491, 698
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	3 cut(s)	180, 226, 1002
BssMI	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
BssT1I	CCWWGG	3 cut(s)	180, 226, 1002
Bst2UI	CCWGG	5 cut(s)	68, 173, 387, 504, 971
Bst4CI	ACNGT	2 cut(s)	30, 567
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstAUI	TGTACA	1 cut(s)	1159
BstC8I	GCNNGC	2 cut(s)	73, 990
BstDEI	CTNAG	4 cut(s)	246, 294, 479, 756
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	688
BstKTI	GATC	7 cut(s)	64, 279, 410, 595, 763, 796, 1191
BstMAI	GTCTC	4 cut(s)	4, 109, 251, 938
BstMBI	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
BstMWI	GCNNNNNNNGC	1 cut(s)	939
BstNI	CCWGG	5 cut(s)	68, 173, 387, 504, 971
BstSCI	CCNGG	5 cut(s)	66, 171, 385, 502, 969
BstV1I	GCAGC	1 cut(s)	791
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	3 cut(s)	592, 760, 793
BstYI	RGATCY	3 cut(s)	592, 760, 793
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	688
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	3 cut(s)	35, 76, 487
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	73, 990
CaiI	CAGNNNCTG	1 cut(s)	1016
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	1207
Csp6I	GTAC	4 cut(s)	390, 456, 1147, 1160
CviAII	CATG	7 cut(s)	23, 41, 181, 338, 589, 1076, 1151
CviQI	GTAC	4 cut(s)	390, 456, 1147, 1160
DdeI	CTNAG	4 cut(s)	246, 294, 479, 756
DpnI	GATC	7 cut(s)	63, 278, 409, 594, 762, 795, 1190
DpnII	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	3 cut(s)	180, 226, 1002
Eco147I	AGGCCT	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	938
Eco47I	GGWCC	1 cut(s)	1207
EcoRII	CCWGG	5 cut(s)	66, 171, 385, 502, 969
EcoT14I	CCWWGG	3 cut(s)	180, 226, 1002
ErhI	CCWWGG	3 cut(s)	180, 226, 1002
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	7 cut(s)	26, 44, 184, 341, 592, 1079, 1154
FalI	AAGNNNNNCTT	2 cut(s)	911, 943
FaqI	GGGAC	1 cut(s)	998
FatI	CATG	7 cut(s)	22, 40, 180, 337, 588, 1075, 1150
FbaI	TGATCA	2 cut(s)	61, 276
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	2 cut(s)	138, 596
GluI	GCNGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	3 cut(s)	474, 968, 992
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	34, 405
Hin1II	CATG	7 cut(s)	26, 44, 184, 341, 592, 1079, 1154
HindIII	AAGCTT	1 cut(s)	1062
HinfI	GANTC	4 cut(s)	95, 176, 924, 1007
HpaII	CCGG	2 cut(s)	34, 405
HphI	GGTGA	2 cut(s)	56, 341
Hpy188I	TCNGA	4 cut(s)	297, 622, 875, 1110
Hpy188III	TCNNGA	4 cut(s)	89, 705, 764, 1100
HpyAV	CCTTC	7 cut(s)	385, 527, 637, 761, 766, 781, 1106
HpyCH4III	ACNGT	2 cut(s)	30, 567
HpyCH4IV	ACGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	939
HpyF3I	CTNAG	4 cut(s)	246, 294, 479, 756
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	7 cut(s)	26, 44, 184, 341, 592, 1079, 1154
KpnI	GGTACC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	61, 276
Kzo9I	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
LmnI	GCTCC	3 cut(s)	91, 841, 966
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	4 cut(s)	277, 658, 943, 1108
MaeI	CTAG	2 cut(s)	138, 596
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	4 cut(s)	36, 167, 363, 1087
MalI	GATC	7 cut(s)	63, 278, 409, 594, 762, 795, 1190
MboI	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
MboII	GAAGA	6 cut(s)	19, 227, 356, 746, 803, 825
MfeI	CAATTG	2 cut(s)	201, 523
MflI	RGATCY	3 cut(s)	592, 760, 793
MmeI	TCCRAC	4 cut(s)	154, 449, 595, 1149
MseI	TTAA	1 cut(s)	962
MslI	CAYNNNNRTG	2 cut(s)	553, 903
MspA1I	CMGCKG	2 cut(s)	250, 610
MspI	CCGG	2 cut(s)	34, 405
MspR9I	CCNGG	5 cut(s)	68, 173, 387, 504, 971
MunI	CAATTG	2 cut(s)	201, 523
MvaI	CCWGG	5 cut(s)	68, 173, 387, 504, 971
MwoI	GCNNNNNNNGC	1 cut(s)	939
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
NlaIII	CATG	7 cut(s)	26, 44, 184, 341, 592, 1079, 1154
NlaIV	GGNNCC	4 cut(s)	239, 391, 501, 968
NmuCI	GTSAC	2 cut(s)	363, 1087
PaqCI	CACCTGC	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	95, 176, 924, 1007
PkrI	GCNGC	1 cut(s)	781
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	5 cut(s)	66, 171, 385, 502, 969
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	5 cut(s)	66, 171, 385, 502, 969
PspN4I	GGNNCC	4 cut(s)	239, 391, 501, 968
PspPI	GGNCC	1 cut(s)	1207
PstNI	CAGNNNCTG	1 cut(s)	1016
PsuI	RGATCY	3 cut(s)	592, 760, 793
PvuII	CAGCTG	2 cut(s)	250, 610
RsaI	GTAC	4 cut(s)	391, 457, 1148, 1161
RsaNI	GTAC	4 cut(s)	390, 456, 1147, 1160
RseI	CAYNNNNRTG	2 cut(s)	553, 903
SaqAI	TTAA	1 cut(s)	962
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	7 cut(s)	61, 276, 407, 592, 760, 793, 1188
Sau96I	GGNCC	1 cut(s)	1207
ScrFI	CCNGG	5 cut(s)	68, 173, 387, 504, 971
SfaNI	GCATC	4 cut(s)	277, 658, 943, 1108
SinI	GGWCC	1 cut(s)	1207
SmiMI	CAYNNNNRTG	2 cut(s)	553, 903
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	2 cut(s)	284, 1085
SspMI	CTAG	2 cut(s)	138, 596
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	5 cut(s)	66, 171, 385, 502, 969
StyI	CCWWGG	3 cut(s)	180, 226, 1002
TaaI	ACNGT	2 cut(s)	30, 567
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	378
TatI	WGTACW	2 cut(s)	455, 1159
TfiI	GAWTC	4 cut(s)	95, 176, 924, 1007
Tru1I	TTAA	1 cut(s)	962
Tru9I	TTAA	1 cut(s)	962
TscAI	CASTG	3 cut(s)	35, 83, 487
TseFI	GTSAC	2 cut(s)	363, 1087
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	363, 1087
TspDTI	ATGAA	2 cut(s)	39, 924
TspRI	CASTG	3 cut(s)	35, 83, 487
VpaK11BI	GGWCC	1 cut(s)	1207
XapI	RAATTY	2 cut(s)	449, 877
XspI	CTAG	2 cut(s)	138, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.