FvH4_6g31880

HAUS augmin-like complex subunit 4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
24967385 .. 24971666
4282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31880.t3

Sequence Viewer

Length: 1305 bp
ATGGTGAAGGGAGGAGTGCAGCAAGCCCAGAACTTGCCGGCGGATTTGACCCAAGTCATTGATCAGTTGGAGCGCCACTGCTTGGCTCCCGATGCTTCCCTCGTCTCCAAATCCGCCTACTACGACCTCCAATTGGCAAGGGAGGAAATGTCCAAGGAGAGACTGCGTTACTTGGAAGCAATGGCACTGTACAGCGAGGCGATGGCGATGGTGGAAGAGTACCAGCAAGCCGTTTCGATGGCTAACCTTGGTGGAAGTCGAGATGTGCAGGGTGTGTATCAGCAGTTGGGATTGAAGAGCTCCCCGCAGCTGTACGAGACATTAGAGCATCGAATGATCGTTGCCGAAGCAGCCCAAAGGTTGAGGCTTCCTCTGATCTCTAAAGATGGAGAAATTCATGAGGAAGAAATTGAGAAATGCAGTGTGTTGTCACGGAGTTCCCTTGATAGCACTAGCACTGGAGTTACAATCAGCTCAAGTTCCAACTCAACAAGCTATACTACTGCAACTGGCACCAGTAGTGCAGCAAACAACAATCTTTCACTTGGTGCTTCTGATGTTGTGGAACCTGGAGTGGGTGGTGTTCCCAATTGTTTTCTTGGAATCACACCTGCTTATTTATGGCAAACACAGCTGCAACAAACACCATTCTCCACGGATATGTCAGAATATCAAGTGTCTCTTTCACGTGAGATTGAGGCTCGTTTGCAAACTAAATGCGATAAGCTAGCTGATGCAGTTATAATGGATGACACTGAGTCATCATCTGGACATCAAAATCTTAATGCTCGACTTCCAGAAAGGGTAAAGTTAATAATTGAAGAGATGGAAAGGGATGAAGCAGCTCTTCAAGACGATCTATATTCTGCAGATAGAAAATTTGCTGAATATTATAACGTCTTAGAGCAGATACTGGCAGTGCTTATTAAGTTGGTCAAAGATTTGAAGTTGCAGCATCAACATAAATATGAGGATCTGCGAAAAACATGGCTGTGCAAAAGGTGTGAGACCATGAGTGCAAAATTGAGGGTTCTGGAGAATGTTCTCCTTCTTGAAACTTATACGAATGAGTCAATACCAGCTCTTCATAAAATAAGGAAATATCTTCTTGAAGCTACAGAAGAAGCTTCTATGGCTTATAATAAAGCAGTTACTCGTCTTCGAGAGTATCAGGGTGTTGATCCTCACTTTGATAATATTGCGAGGCAGTACCACGATATTGTAAAGAAACTGGAAAATATGCAATGGACGATCCAACAAGTTGAGATGGACCTAAAACGTCTCCCTGATCACGCAAATGCATAG

Protein Analysis

435

Amino Acids

49.01

Weight (kDa)

5.15

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS4 PF14735 188 - 384 8.8e-62 HAUS augmin-like complex subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 743, 894, 1140
AarI CACCTGC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 3 cut(s) 41, 114, 305
AclWI GGATC 3 cut(s) 981, 1175, 1246
AcsI RAATTY 2 cut(s) 393, 878
AcvI CACGTG 1 cut(s) 689
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 4 cut(s) 191, 221, 314, 1211
AfiI CCNNNNNNNGG 3 cut(s) 82, 133, 575
AgsI TTSAA 6 cut(s) 295, 821, 851, 946, 1055, 1112
AhdI GACNNNNNGTC 1 cut(s) 757
AjnI CCWGG 1 cut(s) 568
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 6 cut(s) 109, 154, 311, 684, 1001, 1286
AlwI GGATC 3 cut(s) 981, 1175, 1246
AlwNI CAGNNNCTG 1 cut(s) 913
ApeKI GCWGC 7 cut(s) 19, 307, 350, 524, 634, 842, 952
ApoI RAATTY 2 cut(s) 393, 878
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 1270
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 727
AvaII GGWCC 1 cut(s) 1270
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 302
BbrPI CACGTG 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 1151
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 7 cut(s) 31, 319, 362, 536, 621, 854, 964
BccI CCATC 6 cut(s) 196, 202, 232, 380, 820, 1261
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 570
BclI TGATCA 2 cut(s) 61, 1288
BcoDI GTCTC 6 cut(s) 109, 154, 311, 684, 1001, 1286
BfaI CTAG 2 cut(s) 453, 728
BfmI CTRYAG 2 cut(s) 867, 1116
BfoI RGCGCY 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 619
BisI GCNGC 7 cut(s) 20, 308, 351, 525, 635, 843, 953
BlsI GCNGC 7 cut(s) 21, 309, 352, 526, 636, 844, 954
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 1270
BmeRI GACNNNNNGTC 1 cut(s) 757
BmgT120I GGNCC 1 cut(s) 1270
BmiI GGNNCC 3 cut(s) 87, 514, 567
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 4 cut(s) 82, 337, 724, 964
BmtI GCTAGC 1 cut(s) 731
BoxI GACNNNNGTC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 1151
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 3 cut(s) 480, 591, 1055
BpuEI CTTGAG 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 3 cut(s) 153, 247, 654
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 133, 575
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 5 cut(s) 463, 514, 516, 918, 1236
Bse3DI GCAATG 2 cut(s) 186, 1250
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 153, 247, 654
BseGI GGATG 2 cut(s) 754, 841
BseLI CCNNNNNNNGG 3 cut(s) 82, 133, 575
BseMI GCAATG 2 cut(s) 186, 1250
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 5 cut(s) 463, 514, 516, 918, 1236
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 7 cut(s) 31, 319, 362, 536, 621, 854, 964
BsgI GTGCAG 3 cut(s) 38, 287, 543
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 82, 133, 575
BsmAI GTCTC 6 cut(s) 109, 154, 311, 684, 1001, 1286
BsmBI CGTCTC 2 cut(s) 109, 1286
Bso31I GGTCTC 1 cut(s) 1001
Bsp1286I GDGCHC 1 cut(s) 302
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
BspACI CCGC 3 cut(s) 41, 114, 305
BspCNI CTCAG 1 cut(s) 748
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 3 cut(s) 87, 514, 567
BspMAI CTGCAG 1 cut(s) 871
BspMI ACCTGC 1 cut(s) 619
BspOI GCTAGC 1 cut(s) 731
BspPI GGATC 3 cut(s) 981, 1175, 1246
BspQI GCTCTTC 3 cut(s) 290, 852, 1089
BspT107I GGYRCC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 1001
BsrDI GCAATG 2 cut(s) 186, 1250
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 5 cut(s) 463, 514, 516, 918, 1236
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 153, 247, 654
BssMI GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
BssT1I CCWWGG 2 cut(s) 153, 247
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 5 cut(s) 210, 290, 816, 852, 1089
BstAUI TGTACA 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 4 cut(s) 24, 39, 228, 729
BstDEI CTNAG 2 cut(s) 756, 901
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 754, 841
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 8 cut(s) 64, 339, 378, 859, 976, 1183, 1254, 1291
BstMAI GTCTC 6 cut(s) 109, 154, 311, 684, 1001, 1286
BstMBI GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
BstMWI GCNNNNNNNGC 4 cut(s) 92, 350, 631, 1133
BstNI CCWGG 1 cut(s) 570
BstPAI GACNNNNGTC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 2 cut(s) 867, 1116
BstV1I GCAGC 7 cut(s) 31, 319, 362, 536, 621, 854, 964
BstV2I GAAGAC 1 cut(s) 1151
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BtgI CCRYGG 1 cut(s) 654
BtgZI GCGATG 2 cut(s) 215, 221
BtsCI GGATG 2 cut(s) 754, 841
BtsI GCAGTG 3 cut(s) 76, 427, 924
BtsIMutI CAGTG 6 cut(s) 76, 185, 427, 456, 753, 924
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 4 cut(s) 24, 39, 228, 729
CaiI CAGNNNCTG 1 cut(s) 913
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 1270
Csp6I GTAC 4 cut(s) 190, 220, 313, 1210
CviAII CATG 3 cut(s) 398, 987, 1012
CviQI GTAC 4 cut(s) 190, 220, 313, 1210
DdeI CTNAG 2 cut(s) 756, 901
DpnI GATC 8 cut(s) 63, 338, 377, 858, 975, 1182, 1253, 1290
DpnII GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
DraIII CACNNNGTG 1 cut(s) 548
DriI GACNNNNNGTC 1 cut(s) 757
Eam1104I CTCTTC 5 cut(s) 210, 290, 816, 852, 1089
Eam1105I GACNNNNNGTC 1 cut(s) 757
EarI CTCTTC 5 cut(s) 210, 290, 816, 852, 1089
EciI GGCGGA 2 cut(s) 56, 103
Ecl136II GAGCTC 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 153, 247
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 1270
Eco53kI GAGCTC 1 cut(s) 300
Eco72I CACGTG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 153, 247
EcoT22I ATGCAT 1 cut(s) 1303
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 2 cut(s) 153, 247
Esp3I CGTCTC 2 cut(s) 109, 1286
FaeI CATG 3 cut(s) 401, 990, 1015
FalI AAGNNNNNCTT 4 cut(s) 666, 698, 831, 863
FatI CATG 3 cut(s) 397, 986, 1011
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 2 cut(s) 61, 1288
Fnu4HI GCNGC 7 cut(s) 20, 308, 351, 525, 635, 843, 953
FokI GGATG 2 cut(s) 761, 848
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 7 cut(s) 20, 308, 351, 525, 635, 843, 953
FspBI CTAG 2 cut(s) 453, 728
GlaI GCGC 1 cut(s) 74
GluI GCNGC 7 cut(s) 20, 308, 351, 525, 635, 843, 953
GsuI CTGGAG 3 cut(s) 480, 591, 1055
HaeII RGCGCY 1 cut(s) 76
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 401, 990, 1015
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 1125
HinfI GANTC 3 cut(s) 603, 758, 1070
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 375, 556, 667
HpyAV CCTTC 1 cut(s) 1058
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 3 cut(s) 688, 897, 1279
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 350, 631, 1133
HpyF3I CTNAG 2 cut(s) 756, 901
HpySE526I ACGT 3 cut(s) 688, 897, 1279
Hsp92II CATG 3 cut(s) 401, 990, 1015
HspAI GCGC 1 cut(s) 73
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 2 cut(s) 61, 1288
Kzo9I GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
LguI GCTCTTC 3 cut(s) 290, 852, 1089
LmnI GCTCC 3 cut(s) 70, 91, 305
Lsp1109I GCAGC 7 cut(s) 31, 319, 362, 536, 621, 854, 964
LweI GCATC 4 cut(s) 82, 337, 724, 964
MaeI CTAG 2 cut(s) 453, 728
MaeII ACGT 3 cut(s) 688, 897, 1279
MaeIII GTNAC 4 cut(s) 167, 429, 463, 1150
MalI GATC 8 cut(s) 63, 338, 377, 858, 975, 1182, 1253, 1290
MboI GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
MboII GAAGA 9 cut(s) 227, 307, 416, 833, 839, 1076, 1097, 1133, 1151
MfeI CAATTG 2 cut(s) 131, 589
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 7 cut(s) 131, 393, 408, 589, 816, 878, 1022
MlyI GAGTC 2 cut(s) 767, 1079
MmeI TCCRAC 3 cut(s) 48, 507, 1279
Mph1103I ATGCAT 1 cut(s) 1303
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 3 cut(s) 783, 812, 927
MslI CAYNNNNRTG 4 cut(s) 659, 966, 991, 1296
MspA1I CMGCKG 2 cut(s) 310, 634
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 2 cut(s) 131, 589
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 92, 350, 631, 1133
NaeI GCCGGC 1 cut(s) 39
NdeII GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
NgoMIV GCCGGC 1 cut(s) 37
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 3 cut(s) 401, 990, 1015
NlaIV GGNNCC 3 cut(s) 87, 514, 567
NmuCI GTSAC 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 1303
PagI TCATGA 1 cut(s) 397
PaqCI CACCTGC 1 cut(s) 619
PciSI GCTCTTC 3 cut(s) 290, 852, 1089
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 603
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 7 cut(s) 21, 309, 352, 526, 636, 844, 954
PleI GAGTC 2 cut(s) 766, 1078
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 2 cut(s) 766, 1078
Ppu21I YACGTR 1 cut(s) 689
PshAI GACNNNNGTC 1 cut(s) 53
PsiI TTATAA 3 cut(s) 743, 894, 1140
Psp124BI GAGCTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 568
PspCI CACGTG 1 cut(s) 689
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 87, 514, 567
PspPI GGNCC 1 cut(s) 1270
PstI CTGCAG 1 cut(s) 871
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 2 cut(s) 310, 634
RsaI GTAC 4 cut(s) 191, 221, 314, 1211
RsaNI GTAC 4 cut(s) 190, 220, 313, 1210
RseI CAYNNNNRTG 4 cut(s) 659, 966, 991, 1296
SacI GAGCTC 1 cut(s) 302
SapI GCTCTTC 3 cut(s) 290, 852, 1089
SaqAI TTAA 3 cut(s) 783, 812, 927
SatI GCNGC 7 cut(s) 20, 308, 351, 525, 635, 843, 953
Sau3AI GATC 8 cut(s) 61, 336, 375, 856, 973, 1180, 1251, 1288
Sau96I GGNCC 1 cut(s) 1270
SchI GAGTC 2 cut(s) 767, 1079
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 4 cut(s) 82, 337, 724, 964
SfcI CTRYAG 2 cut(s) 867, 1116
SinI GGWCC 1 cut(s) 1270
SmiMI CAYNNNNRTG 4 cut(s) 659, 966, 991, 1296
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 7 cut(s) 131, 393, 408, 589, 816, 878, 1022
SsiI CCGC 3 cut(s) 41, 114, 305
SspI AATATT 2 cut(s) 890, 1198
SspMI CTAG 2 cut(s) 453, 728
SstI GAGCTC 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 153, 247
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 3 cut(s) 691, 900, 1282
TaqI TCGA 5 cut(s) 236, 259, 331, 790, 1162
TasI AATT 7 cut(s) 131, 393, 408, 589, 816, 878, 1022
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 603
Tru1I TTAA 3 cut(s) 783, 812, 927
Tru9I TTAA 3 cut(s) 783, 812, 927
TscAI CASTG 6 cut(s) 83, 192, 427, 463, 760, 924
TseFI GTSAC 1 cut(s) 429
TseI GCWGC 7 cut(s) 19, 307, 350, 524, 634, 842, 952
Tsp45I GTSAC 1 cut(s) 429
TspDTI ATGAA 3 cut(s) 386, 852, 1076
TspGWI ACGGA 2 cut(s) 448, 671
TspRI CASTG 6 cut(s) 83, 192, 427, 463, 760, 924
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 1270
XapI RAATTY 2 cut(s) 393, 878
XspI CTAG 2 cut(s) 453, 728
Zsp2I ATGCAT 1 cut(s) 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.