Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

13366303 .. 13371741

Gene Structure 5439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G214200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGTGAAGGGGCTGCAACTACCAGGACAACAAAACCTGCCACCCGATGTGACCCATCTCATCGATCAGCTGGAACGCCACTGCCTGGCTCCCGATGCTTCCCTCGTCTCCAAATCCGCTTACTTCGACCTCCAACTTGCCAGGGAGGAAATGTCCAACGAAAGACTGCGTTACTTGGAAGCCATGGCAATTTACAGTGAGGCAATTGCAATGGTGGAGGAGTATGAACAAGGCTTGAGCAACTCTCCTCAGCTGTATGAAACATTAGAGCATCGTATGACTATTGCGGAAGCAGCTCAAAGGTTGAGGCTTCCTCTTATCTCCAAGGATGGTGAAATTCATGAGGACGAAATTGAAAAATGCGGGATGATGTCACGTAGTTCCCTTGATAGCACTTGCACCAGTTTTACAGTTAGCTCAAGTTCCAACTCGACAAATTGTACTACTGCAAATAGCAATAGTGCAGCAAACAACAATATGTCTCTTAGTGCCGCTGATGTTGTGGAACCTGCAATTGGTGGTGTACCCAATTGCTTTCTTGGGATTACACCTGGTTATCTATGGCAAACACAGCTCCAGCAAACCCCCTTCTCCATGGATATGACAGAATACCAGTTGTGTCTTTCCCATGAGATTGAGGCTCGTTTGAAAGCTAAATGTGATGTGTTAGCTGATGCCTTTGTCATGGATGACATAGATTCATCACCCAGGCATCAAATTTCAAGTGCTCCGCTTCCAGAAAGGATAAAGTTGATAATCGAGGAAACAGAAAGGGAGGAAGCAGCTCTTCAGGAAGATCTATATTCTGCAGATAGAAAATTTTCTGAGTATTATAATGTCTTAGAGCAGATAGTGGGGGTTCTTATGAAGCTGGTCAAAGATTTGAAGTTGCAACATCAACATAAATATGATGAACAGCAAAAGATATGGCTGTGCAAAAGGTGTGAGACAATGAGTGCAAAATTGAGGAAACTGAAATATTCTGTCCTCGGTCAAACTTATACAAGGGATTCGGTACCTGCCCTATATAAAATACGGAAGTATCTTCTTGATGCTACAAAAGAAGCTGATGCTACATATGATAAAGCGATTACCCGCCTTCGCGAGTACCAGGATGTTGATCCTCACTTTGATAAAATTGCAAGGCAGTACCATGATATCGTAAAGGAATTGGAAAATATGCAATGGACGATCCACCAGGTTGAAATGGACTTGAAACACCTCCCAGATCAACCCAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

415

Amino Acids

47.28

Weight (kDa)

5.08

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
Acc36I	ACCTGC	3 cut(s)	45, 517, 1027
Acc65I	GGTACC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	1015
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	6 cut(s)	117, 287, 363, 492, 731, 1096
AclWI	GGATC	2 cut(s)	1115, 1186
AcsI	RAATTY	3 cut(s)	336, 717, 818
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	5 cut(s)	442, 525, 1017, 1109, 1151
AfiI	CCNNNNNNNGG	2 cut(s)	85, 515
AgsI	TTSAA	6 cut(s)	356, 649, 723, 886, 1205, 1216
AjnI	CCWGG	7 cut(s)	22, 84, 140, 550, 707, 1110, 1197
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	3 cut(s)	112, 486, 941
AlwI	GGATC	2 cut(s)	1115, 1186
ApeKI	GCWGC	4 cut(s)	13, 293, 464, 782
ApoI	RAATTY	3 cut(s)	336, 717, 818
Asp700I	GAANNNNTTC	1 cut(s)	820
Asp718I	GGTACC	1 cut(s)	1015
AsuHPI	GGTGA	3 cut(s)	16, 344, 696
BaeI	ACNNNNGTAYC	2 cut(s)	1025, 1058
BanI	GGYRCC	1 cut(s)	1015
Bbv12I	GWGCWC	1 cut(s)	730
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	305, 476, 794
BccI	CCATC	2 cut(s)	63, 323
BciT130I	CCWGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
BcoDI	GTCTC	3 cut(s)	112, 486, 941
BfaI	CTAG	1 cut(s)	1243
BfmI	CTRYAG	1 cut(s)	807
BfuAI	ACCTGC	3 cut(s)	45, 517, 1027
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	5 cut(s)	14, 294, 465, 492, 783
BlsI	GCNGC	5 cut(s)	15, 295, 466, 493, 784
Bme1390I	CCNGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
BmiI	GGNNCC	3 cut(s)	90, 507, 1017
BmrFI	CCNGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
BmsI	GCATC	6 cut(s)	85, 280, 664, 721, 1042, 1060
BplI	GAGNNNNNCTC	4 cut(s)	229, 261, 298, 330
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	256, 403
Bsa29I	ATCGAT	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	1119
BsaJI	CCNNGG	6 cut(s)	141, 183, 324, 594, 707, 988
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 515
Bse1I	ACTGG	2 cut(s)	402, 613
Bse3DI	GCAATG	2 cut(s)	216, 1190
Bse8I	GATNNNNATC	1 cut(s)	1119
BseBI	CCWGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	6 cut(s)	141, 183, 324, 594, 707, 988
BseGI	GGATG	4 cut(s)	334, 372, 694, 1120
BseJI	GATNNNNATC	1 cut(s)	1119
BseLI	CCNNNNNNNGG	2 cut(s)	85, 515
BseMI	GCAATG	2 cut(s)	216, 1190
BseMII	CTCAG	2 cut(s)	263, 816
BseNI	ACTGG	2 cut(s)	402, 613
BseRI	GAGGAG	2 cut(s)	233, 237
BseXI	GCAGC	3 cut(s)	305, 476, 794
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	1104
BshNI	GGYRCC	1 cut(s)	1015
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	730
BslI	CCNNNNNNNGG	2 cut(s)	85, 515
BsmAI	GTCTC	3 cut(s)	112, 486, 941
BsmBI	CGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
Bsp19I	CCATGG	2 cut(s)	183, 594
Bsp68I	TCGCGA	1 cut(s)	1104
BspACI	CCGC	6 cut(s)	117, 287, 363, 492, 731, 1096
BspCNI	CTCAG	2 cut(s)	262, 817
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	1104
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	90, 507, 1017
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	3 cut(s)	45, 517, 1027
BspPI	GGATC	2 cut(s)	1115, 1186
BspQI	GCTCTTC	1 cut(s)	792
BspT107I	GGYRCC	1 cut(s)	1015
BsrDI	GCAATG	2 cut(s)	216, 1190
BsrI	ACTGG	2 cut(s)	402, 613
BssECI	CCNNGG	6 cut(s)	141, 183, 324, 594, 707, 988
BssMI	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
BssT1I	CCWWGG	3 cut(s)	183, 324, 594
Bst2UI	CCWGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
Bst4CI	ACNGT	2 cut(s)	197, 412
Bst6I	CTCTTC	1 cut(s)	792
BstBAI	YACGTR	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	249, 485, 825, 841
BstDSI	CCRYGG	2 cut(s)	183, 594
BstF5I	GGATG	4 cut(s)	334, 372, 694, 1120
BstFNI	CGCG	1 cut(s)	1104
BstKTI	GATC	5 cut(s)	67, 799, 1123, 1194, 1231
BstMAI	GTCTC	3 cut(s)	112, 486, 941
BstMBI	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 293, 571
BstNI	CCWGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
BstSCI	CCNGG	7 cut(s)	22, 84, 140, 550, 707, 1110, 1197
BstSFI	CTRYAG	1 cut(s)	807
BstUI	CGCG	1 cut(s)	1104
BstV1I	GCAGC	3 cut(s)	305, 476, 794
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
Bsu15I	ATCGAT	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	2 cut(s)	183, 594
BtsCI	GGATG	4 cut(s)	334, 372, 694, 1120
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 202
BtuMI	TCGCGA	1 cut(s)	1104
BveI	ACCTGC	3 cut(s)	45, 517, 1027
CciI	TCATGA	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	63
CsiI	ACCWGGT	2 cut(s)	550, 1197
Csp6I	GTAC	5 cut(s)	441, 524, 1016, 1108, 1150
CviAII	CATG	6 cut(s)	184, 341, 595, 629, 685, 1154
CviQI	GTAC	5 cut(s)	441, 524, 1016, 1108, 1150
DdeI	CTNAG	4 cut(s)	249, 485, 825, 841
DpnI	GATC	5 cut(s)	66, 798, 1122, 1193, 1230
DpnII	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	3 cut(s)	183, 324, 594
Eco32I	GATATC	1 cut(s)	1159
Eco57I	CTGAAG	1 cut(s)	773
EcoRII	CCWGG	7 cut(s)	22, 84, 140, 550, 707, 1110, 1197
EcoRV	GATATC	1 cut(s)	1159
EcoT14I	CCWWGG	3 cut(s)	183, 324, 594
ErhI	CCWWGG	3 cut(s)	183, 324, 594
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	6 cut(s)	187, 344, 598, 632, 688, 1157
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FatI	CATG	6 cut(s)	183, 340, 594, 628, 684, 1153
FauI	CCCGC	2 cut(s)	356, 1103
FauNDI	CATATG	1 cut(s)	1078
Fnu4HI	GCNGC	5 cut(s)	14, 294, 465, 492, 783
FokI	GGATG	4 cut(s)	341, 379, 701, 1127
Fsp4HI	GCNGC	5 cut(s)	14, 294, 465, 492, 783
FspBI	CTAG	1 cut(s)	1243
GluI	GCNGC	5 cut(s)	14, 294, 465, 492, 783
GsuI	CTGGAG	1 cut(s)	560
Hin1II	CATG	6 cut(s)	187, 344, 598, 632, 688, 1157
HinfI	GANTC	2 cut(s)	698, 1010
HphI	GGTGA	3 cut(s)	16, 344, 696
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	1 cut(s)	826
Hpy188III	TCNNGA	6 cut(s)	92, 341, 737, 791, 1049, 1103
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	598, 1109
HpyCH4III	ACNGT	2 cut(s)	197, 412
HpyCH4IV	ACGT	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 293, 571
HpyF3I	CTNAG	4 cut(s)	249, 485, 825, 841
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	6 cut(s)	187, 344, 598, 632, 688, 1157
KpnI	GGTACC	1 cut(s)	1019
Kzo9I	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	3 cut(s)	94, 579, 733
Lsp1109I	GCAGC	3 cut(s)	305, 476, 794
LweI	GCATC	6 cut(s)	85, 280, 664, 721, 1042, 1060
MabI	ACCWGGT	2 cut(s)	550, 1197
MaeI	CTAG	1 cut(s)	1243
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	49, 170, 372
MalI	GATC	5 cut(s)	66, 798, 1122, 1193, 1230
MboI	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
MboII	GAAGA	3 cut(s)	779, 806, 1037
MfeI	CAATTG	3 cut(s)	204, 513, 529
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	1 cut(s)	730
MmeI	TCCRAC	3 cut(s)	157, 180, 450
MroXI	GAANNNNTTC	1 cut(s)	820
MslI	CAYNNNNRTG	2 cut(s)	599, 906
MspA1I	CMGCKG	3 cut(s)	70, 253, 494
MspR9I	CCNGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
MunI	CAATTG	3 cut(s)	204, 513, 529
MvaI	CCWGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	3 cut(s)	95, 293, 571
NcoI	CCATGG	2 cut(s)	183, 594
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
NlaIII	CATG	6 cut(s)	187, 344, 598, 632, 688, 1157
NlaIV	GGNNCC	3 cut(s)	90, 507, 1017
NmuCI	GTSAC	2 cut(s)	49, 372
NruI	TCGCGA	1 cut(s)	1104
PagI	TCATGA	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	698, 1010
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	5 cut(s)	15, 295, 466, 493, 784
Ppu21I	YACGTR	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	834
Psp6I	CCWGG	7 cut(s)	22, 84, 140, 550, 707, 1110, 1197
PspGI	CCWGG	7 cut(s)	22, 84, 140, 550, 707, 1110, 1197
PspN4I	GGNNCC	3 cut(s)	90, 507, 1017
PstI	CTGCAG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	2 cut(s)	70, 253
RruI	TCGCGA	1 cut(s)	1104
RsaI	GTAC	5 cut(s)	442, 525, 1017, 1109, 1151
RsaNI	GTAC	5 cut(s)	441, 524, 1016, 1108, 1150
RseI	CAYNNNNRTG	2 cut(s)	599, 906
SapI	GCTCTTC	1 cut(s)	792
SatI	GCNGC	5 cut(s)	14, 294, 465, 492, 783
Sau3AI	GATC	5 cut(s)	64, 796, 1120, 1191, 1228
ScrFI	CCNGG	7 cut(s)	24, 86, 142, 552, 709, 1112, 1199
SduI	GDGCHC	1 cut(s)	730
SexAI	ACCWGGT	2 cut(s)	550, 1197
SfaNI	GCATC	6 cut(s)	85, 280, 664, 721, 1042, 1060
SfcI	CTRYAG	1 cut(s)	807
SmiMI	CAYNNNNRTG	2 cut(s)	599, 906
SmlI	CTYRAG	2 cut(s)	235, 418
SmoI	CTYRAG	2 cut(s)	235, 418
SsiI	CCGC	6 cut(s)	117, 287, 363, 492, 731, 1096
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	1 cut(s)	1243
StyD4I	CCNGG	7 cut(s)	22, 84, 140, 550, 707, 1110, 1197
StyI	CCWWGG	3 cut(s)	183, 324, 594
TaaI	ACNGT	2 cut(s)	197, 412
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	63, 126, 431, 759
TaqII	GACCGA	1 cut(s)	980
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	698, 1010
TscAI	CASTG	2 cut(s)	86, 202
TseFI	GTSAC	2 cut(s)	49, 372
TseI	GCWGC	4 cut(s)	13, 293, 464, 782
Tsp45I	GTSAC	2 cut(s)	49, 372
TspDTI	ATGAA	6 cut(s)	240, 273, 329, 690, 881, 927
TspGWI	ACGGA	1 cut(s)	1051
TspRI	CASTG	2 cut(s)	86, 202
Van91I	CCANNNNNTGG	1 cut(s)	85
XapI	RAATTY	3 cut(s)	336, 717, 818
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.