Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Forward (+)

17633042 .. 17633434

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTAGCAAAGCAGGGATGGCGGGTTTTACAGAATCCAGATTCTCTTATTGCCAAAATGTACAAAGCCAGGTATTTTCCGGATTGTGATTTTTTTGAGGCACCCGATCATAGTTCTCCTTCTTTTTCTTGGCGGAGCATTGTGGGTACTAGGTATCTGCTAAAGCAAGGAATGGGGTGGCAGATCGGTAATGGTGTTGGGGTTCGAGTTTGGATGGATCCGTGGCTTCCCAATGCCTATCCTTTTGTTCCGGTGCCTCGGGCAATTGGTGTGGATGTCACTTTGCTTGTGGAGGATCTTCTTTTAGCTCCAGTGAGGTGGGATATGAATAAGGTGCAGCAACTCTTTGTTCCTCAAGATGTGGCACTGGTGAAGTCTCTAGTACTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

130

Amino Acids

14.81

Weight (kDa)

8.82

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	100, 253
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	2 cut(s)	22, 133
AclWI	GGATC	3 cut(s)	212, 225, 303
AfaI	GTAC	3 cut(s)	62, 148, 384
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	212, 225, 303
Ama87I	CYCGRG	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	2 cut(s)	100, 253
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	12, 208
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	150, 380
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
BmcAI	AGTACT	1 cut(s)	384
Bme1390I	CCNGG	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	3 cut(s)	102, 219, 255
BmrFI	CCNGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	221, 257
BsaWI	WCCGGW	2 cut(s)	79, 250
Bse1I	ACTGG	2 cut(s)	311, 372
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	221, 257
BseGI	GGATG	3 cut(s)	23, 219, 280
BseNI	ACTGG	2 cut(s)	311, 372
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	356
BshNI	GGYRCC	2 cut(s)	100, 253
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	80, 251
BsmAI	GTCTC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	106, 183, 217, 295
BspACI	CCGC	2 cut(s)	22, 133
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	3 cut(s)	102, 219, 255
BspPI	GGATC	3 cut(s)	212, 225, 303
BspT107I	GGYRCC	2 cut(s)	100, 253
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	311, 372
BssECI	CCNNGG	2 cut(s)	221, 257
BssMI	GATC	4 cut(s)	106, 183, 217, 295
Bst2UI	CCWGG	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	23, 219, 280
BstKTI	GATC	4 cut(s)	109, 186, 220, 298
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	4 cut(s)	106, 183, 217, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	2 cut(s)	217, 295
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstYI	RGATCY	2 cut(s)	217, 295
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	23, 219, 280
BtsIMutI	CAGTG	2 cut(s)	318, 365
Csp6I	GTAC	3 cut(s)	61, 147, 383
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviJI	RGCY	3 cut(s)	68, 226, 308
CviKI_1	RGCY	3 cut(s)	68, 226, 308
CviQI	GTAC	3 cut(s)	61, 147, 383
DpnI	GATC	4 cut(s)	108, 185, 219, 297
DpnII	GATC	4 cut(s)	106, 183, 217, 295
EciI	GGCGGA	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	68
FaiI	YATR	3 cut(s)	111, 326, 391
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	3 cut(s)	30, 226, 287
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	2 cut(s)	150, 380
GluI	GCNGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	294
HapII	CCGG	2 cut(s)	80, 251
HinfI	GANTC	2 cut(s)	34, 41
HpaII	CCGG	2 cut(s)	80, 251
HphI	GGTGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	38, 80, 356
HpyAV	CCTTC	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	106, 183, 217, 295
LmnI	GCTCC	2 cut(s)	135, 313
LpnPI	CCDG	7 cut(s)	51, 55, 82, 93, 264, 324, 353
Lsp1109I	GCAGC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	150, 380
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	108, 185, 219, 297
MboI	GATC	4 cut(s)	106, 183, 217, 295
MboII	GAAGA	1 cut(s)	290
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	217, 295
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	5 cut(s)	91, 267, 286, 309, 363
MroI	TCCGGA	1 cut(s)	79
MspI	CCGG	2 cut(s)	80, 251
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	4 cut(s)	106, 183, 217, 295
NlaIV	GGNNCC	3 cut(s)	102, 219, 255
NmuCI	GTSAC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	34, 41
PkrI	GCNGC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	102, 219, 255
PsuI	RGATCY	2 cut(s)	217, 295
RsaI	GTAC	3 cut(s)	62, 148, 384
RsaNI	GTAC	3 cut(s)	61, 147, 383
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	4 cut(s)	106, 183, 217, 295
ScaI	AGTACT	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	5 cut(s)	74, 155, 310, 320, 336
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	2 cut(s)	22, 133
SspMI	CTAG	2 cut(s)	150, 380
StyD4I	CCNGG	1 cut(s)	68
TaqI	TCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	264
TatI	WGTACW	2 cut(s)	60, 382
TfiI	GAWTC	2 cut(s)	34, 41
TscAI	CASTG	2 cut(s)	318, 372
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	2 cut(s)	318, 372
XspI	CTAG	2 cut(s)	150, 380
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.