Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Forward (+)

58230218 .. 58232668

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAAGGGAGTGCAACAAGGCCAAAATTTGCCGCCCGATTTGACCCAAGTCATTGATCAGTTGGAGCGCCACTGCTTGGCTCCGGATGGTTCCCTAGTCTCTAAATCCGCCTTCTACGACCTCCAACTGGCAAGAGAGGAAATGTCCAAGGAAAGACTGCGTTACTTGGAAGCAATGGCACTTTATAGCGAGGCAATGGCAATGGTGGAAGAGTACCAGCAAGCGGTTTCGATGGCTAACCTTGGAGGAAGTCGAGATGTGCAGGGTGTCTATCAGCAATTGGGCTTGAACAACTCTCCACAGAAGCAGCTCAAAGCACTAGCACTGGTACAATCAGCTCAAGTTCCAACTCGACAAGCTATACTACTGCAACTGGCACCAGTAGTGCAGCAAACAACCATCTTTCACTTGGTGCTTCTGATCAAACACCATTTCTCCCTGGACATGACAGAATATCACGTGTCTCTTTCACGTGAGATTGAGGCTCGTTTGCAAGCTAAATGTGACAAGCTAGCTGATGCAGTTATAATGGATGACACTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

182

Amino Acids

20.32

Weight (kDa)

5.5

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	3 cut(s)	35, 111, 227
AcsI	RAATTY	1 cut(s)	28
AcvI	CACGTG	2 cut(s)	463, 476
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	2 cut(s)	218, 333
AfiI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	6 cut(s)	313, 341, 362, 500, 514, 518
AluI	AGCT	6 cut(s)	313, 341, 362, 500, 514, 518
Alw26I	GTCTC	2 cut(s)	106, 471
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	310, 391
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	379
BbrPI	CACGTG	2 cut(s)	463, 476
BbvI	GCAGC	2 cut(s)	322, 403
BccI	CCATC	3 cut(s)	83, 229, 410
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	2 cut(s)	58, 423
BcoDI	GTCTC	2 cut(s)	106, 471
BfaI	CTAG	3 cut(s)	98, 323, 515
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	3 cut(s)	35, 311, 392
BlsI	GCNGC	3 cut(s)	36, 312, 393
Bme1390I	CCNGG	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	84, 94, 381
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	518
BoxI	GACNNNNGTC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	327
BsaAI	YACGTR	2 cut(s)	463, 476
BsaJI	CCNNGG	3 cut(s)	150, 244, 441
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 130, 226
Bse1I	ACTGG	5 cut(s)	135, 333, 381, 383, 547
Bse3DI	GCAATG	3 cut(s)	183, 204, 210
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	150, 244, 441
BseGI	GGATG	2 cut(s)	94, 541
BseLI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
BseMI	GCAATG	3 cut(s)	183, 204, 210
BseNI	ACTGG	5 cut(s)	135, 333, 381, 383, 547
BseXI	GCAGC	2 cut(s)	322, 403
BsgI	GTGCAG	2 cut(s)	284, 410
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
BsmAI	GTCTC	2 cut(s)	106, 471
BsnI	GGCC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	58, 423
BspACI	CCGC	3 cut(s)	35, 111, 227
BspANI	GGCC	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	84, 94, 381
BspOI	GCTAGC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	183, 204, 210
BsrI	ACTGG	5 cut(s)	135, 333, 381, 383, 547
BssECI	CCNNGG	3 cut(s)	150, 244, 441
BssMI	GATC	2 cut(s)	58, 423
BssT1I	CCWWGG	2 cut(s)	150, 244
Bst2UI	CCWGG	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	2 cut(s)	463, 476
BstC8I	GCNNGC	3 cut(s)	225, 498, 516
BstF5I	GGATG	2 cut(s)	94, 541
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	61, 426
BstMAI	GTCTC	2 cut(s)	106, 471
BstMBI	GATC	2 cut(s)	58, 423
BstNI	CCWGG	1 cut(s)	443
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	322, 403
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	94, 541
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 326, 540
Cac8I	GCNNGC	3 cut(s)	225, 498, 516
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	217, 332
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	2 cut(s)	217, 332
DpnI	GATC	2 cut(s)	60, 425
DpnII	GATC	2 cut(s)	58, 423
DraIII	CACNNNGTG	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	150, 244
Eco72I	CACGTG	2 cut(s)	463, 476
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	150, 244
ErhI	CCWWGG	2 cut(s)	150, 244
FaeI	CATG	1 cut(s)	451
FaiI	YATR	4 cut(s)	189, 365, 449, 530
FatI	CATG	1 cut(s)	447
FbaI	TGATCA	2 cut(s)	58, 423
Fnu4HI	GCNGC	3 cut(s)	35, 311, 392
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	35, 311, 392
FspBI	CTAG	3 cut(s)	98, 323, 515
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	35, 311, 392
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	86, 257
HpyAV	CCTTC	1 cut(s)	124
HpyCH4IV	ACGT	2 cut(s)	462, 475
HpyCH4V	TGCA	6 cut(s)	16, 265, 373, 391, 496, 524
HpySE526I	ACGT	2 cut(s)	462, 475
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	85
Ksp22I	TGATCA	2 cut(s)	58, 423
Kzo9I	GATC	2 cut(s)	58, 423
LmnI	GCTCC	2 cut(s)	67, 88
Lsp1109I	GCAGC	2 cut(s)	322, 403
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	3 cut(s)	98, 323, 515
MaeII	ACGT	2 cut(s)	462, 475
MaeIII	GTNAC	2 cut(s)	164, 506
MalI	GATC	2 cut(s)	60, 425
MboI	GATC	2 cut(s)	58, 423
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	2 cut(s)	28, 281
MmeI	TCCRAC	3 cut(s)	45, 151, 374
MnlI	CCTC	5 cut(s)	133, 134, 187, 242, 478
MroI	TCCGGA	1 cut(s)	85
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	58, 423
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	3 cut(s)	84, 94, 381
NmuCI	GTSAC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	36, 312, 393
PmaCI	CACGTG	2 cut(s)	463, 476
PmlI	CACGTG	2 cut(s)	463, 476
Ppu21I	YACGTR	2 cut(s)	463, 476
PshAI	GACNNNNGTC	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	441
PspCI	CACGTG	2 cut(s)	463, 476
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	84, 94, 381
RsaI	GTAC	2 cut(s)	218, 333
RsaNI	GTAC	2 cut(s)	217, 332
SatI	GCNGC	3 cut(s)	35, 311, 392
Sau3AI	GATC	2 cut(s)	58, 423
ScrFI	CCNGG	1 cut(s)	443
SfaNI	GCATC	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	2 cut(s)	28, 281
SsiI	CCGC	3 cut(s)	35, 111, 227
SspMI	CTAG	3 cut(s)	98, 323, 515
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	2 cut(s)	150, 244
TaiI	ACGT	2 cut(s)	465, 478
TaqI	TCGA	3 cut(s)	233, 256, 355
TasI	AATT	2 cut(s)	28, 281
TauI	GCSGC	1 cut(s)	37
TscAI	CASTG	3 cut(s)	80, 333, 547
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	310, 391
Tsp45I	GTSAC	1 cut(s)	506
TspRI	CASTG	3 cut(s)	80, 333, 547
Van91I	CCANNNNNTGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	3 cut(s)	98, 323, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.