Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

34522958 .. 34526645

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGTTGAAGAGACTGCGATTACAAGAACAATGCCAGCTACAGGATTTGAGCCAAGTCATTGATCATCTGGGGCGCCACTGCTTCGCTCCCGATGATTCTCTCGTCTCCAAATCCGCATACTACGACCTCCAACTCGCGAGGGAGGAAATGTGCAGGGAAAGACTGCGTTACTTGGAAGCCATGGCAATTTATAGTGAGGCAATTGCAATGGTGGAAGATTATCACCAAGGCTGGGGGAACCCTCCTCAGCTGTTTGGGACGTTGGAGCATCTTATGATCACTGCAGAAGCTGCTCAAAGGTTGAGGCTTCCTCTGCTCTCTAAAGACGGTGATATTCATGAGGAAGAAATTGAAAGATGCAGCATAGTGTCAAAAAGTTCCCTCGATAGTACTTGTACCAGTTTCACAGTCGGGTCAAGTTCTAACTCTCCAAATTATAGTGGTGCAAATAGCACAGTTAGTGCAGCAAACAACAATCTTTGTCTCAGTGCTAATTCAGTCGAGGAACCTGGACTTGGAGGCGTTCCCAATTGCTTTCTTGGAATTACACCTGCATATTTATGGAAGACACAGCTTCAACAAATCCCTTTCGACATGGATCTGGCAGAATACCGGCTGTCTCTTTCCGATGAGATTGAGGCTCGTTTGCAAGCTAAATGTGATAAGTTAGCCGACGCCTTTGTAATGGAAGACATAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATTGATTTCTCTAAAGCAAAATTTGTGCTTTATTGCTGCAGACTGGCTGTCATCTGGACAGGAAAATACAAGTGATCAGTTACCAGAAAGGGTAAAGTCAATAACTGAGGAGCTGGAAAGGGAGGAAGCAGCTCTGAAGGAAGATCTGTATTCAGCAGAAAGAAGATTTACTGAATACTACAATGTTTTAGAGCAGATATTGGGAGTTCTTATAAAGCTGGTCAGAAATTTGAAGTTGCAACATCAACACAAATATGATGAACTGCAAAAGATATTCTTGTGCAAAAGGTGCGAGACCATAGATGCAAAATTGAGGAGCCTGGAGTATGGTCTCCTTCGGGACACTTATTCTAAGGATTCAGTACCTGCCCTGCATAAAATAAGGAAATATCTTCTTGAAGCTACAAAAGAAGCTTCTATCACACATGATAAAGCGGTTACTCGCCTTCATGAGTATCAGAGTGTTGATGCTTACTTCAATAAAATTGCAGGGCAGTACCGTGATATTGTAAAGGTAATAGGAATGCTTACAGTTGTCCATTGGTTTCCTAATGCTAAACTAATCAACATTCCTCCACAGAAGTTGGAAAATATGCAATGGACGATCCAGCAAGTAGAAATGGACCTGAAACGCGTCCCAGAACTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

471

Amino Acids

53.78

Weight (kDa)

5.32

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS4	PF14735	169 - 230	4.9e-08	HAUS augmin-like complex subunit 4
HAUS4	PF14735	276 - 427	1.4e-50	HAUS augmin-like complex subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	974
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	2 cut(s)	559, 1135
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	2 cut(s)	137, 1395
AciI	CCGC	2 cut(s)	114, 1196
AclWI	GGATC	2 cut(s)	606, 1360
AcsI	RAATTY	2 cut(s)	781, 988
AcuI	CTGAAG	1 cut(s)	917
AcyI	GRCGYC	2 cut(s)	73, 675
AfaI	GTAC	4 cut(s)	391, 397, 1125, 1259
AfiI	CCNNNNNNNGG	3 cut(s)	40, 232, 515
AflIII	ACRYGT	1 cut(s)	1393
AgsI	TTSAA	6 cut(s)	7, 353, 578, 994, 1160, 1240
AhdI	GACNNNNNGTC	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	508, 1080
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
Alw26I	GTCTC	7 cut(s)	4, 109, 488, 624, 704, 1049, 1097
AlwI	GGATC	2 cut(s)	606, 1360
AlwNI	CAGNNNCTG	2 cut(s)	290, 1127
ApeKI	GCWGC	5 cut(s)	290, 360, 464, 797, 890
ApoI	RAATTY	2 cut(s)	781, 988
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	1384
AsuHPI	GGTGA	2 cut(s)	215, 341
AvaII	GGWCC	1 cut(s)	1384
BanI	GGYRCC	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	572, 696
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	5 cut(s)	277, 372, 476, 784, 902
BciT130I	CCWGG	2 cut(s)	510, 1082
BclI	TGATCA	3 cut(s)	61, 276, 835
BcoDI	GTCTC	7 cut(s)	4, 109, 488, 624, 704, 1049, 1097
BfmI	CTRYAG	3 cut(s)	38, 282, 798
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	2 cut(s)	559, 1135
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	5 cut(s)	291, 361, 465, 798, 891
BlsI	GCNGC	5 cut(s)	292, 362, 466, 799, 892
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	510, 1082
Bme18I	GGWCC	1 cut(s)	1384
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	1384
BmiI	GGNNCC	4 cut(s)	74, 239, 507, 1079
BmrFI	CCNGG	2 cut(s)	510, 1082
BmsI	GCATC	4 cut(s)	277, 347, 1054, 1219
BoxI	GACNNNNGTC	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	572, 696
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	1 cut(s)	1103
Bpu10I	CCTNAGC	1 cut(s)	246
BsaHI	GRCGYC	2 cut(s)	73, 675
BsaI	GGTCTC	3 cut(s)	704, 1049, 1097
BsaJI	CCNNGG	2 cut(s)	180, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 232, 515
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	2 cut(s)	399, 809
Bse3DI	GCAATG	2 cut(s)	213, 1364
BseBI	CCWGG	2 cut(s)	510, 1082
BseDI	CCNNGG	2 cut(s)	180, 226
BseLI	CCNNNNNNNGG	3 cut(s)	40, 232, 515
BseMI	GCAATG	2 cut(s)	213, 1364
BseMII	CTCAG	3 cut(s)	260, 499, 858
BseNI	ACTGG	2 cut(s)	399, 809
BseRI	GAGGAG	3 cut(s)	234, 884, 1090
BseXI	GCAGC	5 cut(s)	277, 372, 476, 784, 902
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	172, 483
Bsh1236I	CGCG	2 cut(s)	137, 1395
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	3 cut(s)	271, 1115, 1382
BslI	CCNNNNNNNGG	3 cut(s)	40, 232, 515
BsmAI	GTCTC	7 cut(s)	4, 109, 488, 624, 704, 1049, 1097
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	3 cut(s)	271, 1115, 1382
BsmI	GAATGC	1 cut(s)	1290
Bso31I	GGTCTC	3 cut(s)	704, 1049, 1097
Bsp143I	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
Bsp19I	CCATGG	1 cut(s)	180
Bsp68I	TCGCGA	1 cut(s)	137
BspACI	CCGC	2 cut(s)	114, 1196
BspCNI	CTCAG	3 cut(s)	259, 498, 859
BspFNI	CGCG	2 cut(s)	137, 1395
BspHI	TCATGA	2 cut(s)	337, 1210
BspLI	GGNNCC	4 cut(s)	74, 239, 507, 1079
BspMAI	CTGCAG	2 cut(s)	286, 802
BspMI	ACCTGC	2 cut(s)	559, 1135
BspPI	GGATC	2 cut(s)	606, 1360
BspT107I	GGYRCC	1 cut(s)	72
BspTNI	GGTCTC	3 cut(s)	704, 1049, 1097
BsrDI	GCAATG	2 cut(s)	213, 1364
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	399, 809
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	180, 226
BssMI	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
BssNI	GRCGYC	2 cut(s)	73, 675
BssT1I	CCWWGG	2 cut(s)	180, 226
Bst2UI	CCWGG	2 cut(s)	510, 1082
Bst4CI	ACNGT	5 cut(s)	329, 409, 457, 1262, 1294
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	2 cut(s)	73, 675
BstAPI	GCANNNNNTGC	2 cut(s)	290, 1050
BstC8I	GCNNGC	2 cut(s)	35, 651
BstDEI	CTNAG	4 cut(s)	246, 485, 867, 1113
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	137, 1395
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	64, 279, 601, 838, 907, 1368
BstMAI	GTCTC	7 cut(s)	4, 109, 488, 624, 704, 1049, 1097
BstMBI	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 313, 1050
BstNI	CCWGG	2 cut(s)	510, 1082
BstPAI	GACNNNNGTC	1 cut(s)	696
BstSCI	CCNGG	2 cut(s)	508, 1080
BstSFI	CTRYAG	3 cut(s)	38, 282, 798
BstUI	CGCG	2 cut(s)	137, 1395
BstV1I	GCAGC	5 cut(s)	277, 372, 476, 784, 902
BstV2I	GAAGAC	2 cut(s)	572, 696
BstX2I	RGATCY	2 cut(s)	598, 904
BstYI	RGATCY	2 cut(s)	598, 904
BtgI	CCRYGG	1 cut(s)	180
BtsI	GCAGTG	2 cut(s)	76, 279
BtsIMutI	CAGTG	3 cut(s)	76, 279, 493
BtuMI	TCGCGA	1 cut(s)	137
BveI	ACCTGC	2 cut(s)	559, 1135
Cac8I	GCNNGC	2 cut(s)	35, 651
CaiI	CAGNNNCTG	2 cut(s)	290, 1127
CciI	TCATGA	2 cut(s)	337, 1210
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	1384
CseI	GACGC	2 cut(s)	683, 1384
Csp6I	GTAC	4 cut(s)	390, 396, 1124, 1258
CspCI	CAANNNNNGTGG	2 cut(s)	1326, 1361
CviAII	CATG	5 cut(s)	181, 338, 595, 1187, 1211
CviQI	GTAC	4 cut(s)	390, 396, 1124, 1258
DdeI	CTNAG	4 cut(s)	246, 485, 867, 1113
DinI	GGCGCC	1 cut(s)	74
DpnI	GATC	6 cut(s)	63, 278, 600, 837, 906, 1367
DpnII	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
DriI	GACNNNNNGTC	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	2
Eam1105I	GACNNNNNGTC	1 cut(s)	808
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	2 cut(s)	180, 226
Eco31I	GGTCTC	3 cut(s)	704, 1049, 1097
Eco47I	GGWCC	1 cut(s)	1384
Eco57I	CTGAAG	1 cut(s)	917
EcoRII	CCWGG	2 cut(s)	508, 1080
EcoT14I	CCWWGG	2 cut(s)	180, 226
EgeI	GGCGCC	1 cut(s)	74
EheI	GGCGCC	1 cut(s)	74
ErhI	CCWWGG	2 cut(s)	180, 226
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	5 cut(s)	184, 341, 598, 1190, 1214
FalI	AAGNNNNNCTT	2 cut(s)	1022, 1054
FaqI	GGGAC	3 cut(s)	271, 1115, 1382
FatI	CATG	5 cut(s)	180, 337, 594, 1186, 1210
FbaI	TGATCA	3 cut(s)	61, 276, 835
Fnu4HI	GCNGC	5 cut(s)	291, 361, 465, 798, 891
Fsp4HI	GCNGC	5 cut(s)	291, 361, 465, 798, 891
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	5 cut(s)	291, 361, 465, 798, 891
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	1103
HaeII	RGCGCY	1 cut(s)	76
HapII	CCGG	1 cut(s)	613
HgaI	GACGC	2 cut(s)	683, 1384
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	2 cut(s)	73, 675
Hin1II	CATG	5 cut(s)	184, 341, 598, 1190, 1214
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	1173
HinfI	GANTC	2 cut(s)	95, 1118
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	2 cut(s)	215, 341
Hpy188I	TCNGA	4 cut(s)	628, 897, 986, 1221
Hpy188III	TCNNGA	7 cut(s)	89, 136, 338, 816, 1100, 1157, 1211
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	3 cut(s)	892, 1106, 1217
HpyCH4III	ACNGT	5 cut(s)	329, 409, 457, 1262, 1294
HpyCH4IV	ACGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 313, 1050
HpyF3I	CTNAG	4 cut(s)	246, 485, 867, 1113
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	73, 675
Hsp92II	CATG	5 cut(s)	184, 341, 598, 1190, 1214
HspAI	GCGC	1 cut(s)	73
KasI	GGCGCC	1 cut(s)	72
Ksp22I	TGATCA	3 cut(s)	61, 276, 835
Kzo9I	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
LmnI	GCTCC	4 cut(s)	91, 265, 871, 1077
Lsp1109I	GCAGC	5 cut(s)	277, 372, 476, 784, 902
LweI	GCATC	4 cut(s)	277, 347, 1054, 1219
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	3 cut(s)	167, 840, 1198
MalI	GATC	6 cut(s)	63, 278, 600, 837, 906, 1367
MboI	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
MboII	GAAGA	8 cut(s)	19, 227, 356, 577, 701, 914, 936, 1145
MfeI	CAATTG	2 cut(s)	201, 529
MflI	RGATCY	2 cut(s)	598, 904
MluI	ACGCGT	1 cut(s)	1393
Mly113I	GGCGCC	1 cut(s)	73
MmeI	TCCRAC	3 cut(s)	154, 243, 1326
MslI	CAYNNNNRTG	2 cut(s)	559, 1014
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	2 cut(s)	510, 1082
MunI	CAATTG	2 cut(s)	201, 529
Mva1269I	GAATGC	1 cut(s)	1290
MvaI	CCWGG	2 cut(s)	510, 1082
MvnI	CGCG	2 cut(s)	137, 1395
MwoI	GCNNNNNNNGC	3 cut(s)	290, 313, 1050
NarI	GGCGCC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
NlaIII	CATG	5 cut(s)	184, 341, 598, 1190, 1214
NlaIV	GGNNCC	4 cut(s)	74, 239, 507, 1079
NruI	TCGCGA	1 cut(s)	137
PagI	TCATGA	2 cut(s)	337, 1210
PaqCI	CACCTGC	1 cut(s)	559
PctI	GAATGC	1 cut(s)	1290
PfeI	GAWTC	2 cut(s)	95, 1118
PkrI	GCNGC	5 cut(s)	292, 362, 466, 799, 892
PluTI	GGCGCC	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	696
PsiI	TTATAA	1 cut(s)	974
Psp6I	CCWGG	2 cut(s)	508, 1080
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	508, 1080
PspN4I	GGNNCC	4 cut(s)	74, 239, 507, 1079
PspPI	GGNCC	1 cut(s)	1384
PstI	CTGCAG	2 cut(s)	286, 802
PstNI	CAGNNNCTG	2 cut(s)	290, 1127
PsuI	RGATCY	2 cut(s)	598, 904
PvuII	CAGCTG	1 cut(s)	250
RruI	TCGCGA	1 cut(s)	137
RsaI	GTAC	4 cut(s)	391, 397, 1125, 1259
RsaNI	GTAC	4 cut(s)	390, 396, 1124, 1258
RseI	CAYNNNNRTG	2 cut(s)	559, 1014
SatI	GCNGC	5 cut(s)	291, 361, 465, 798, 891
Sau3AI	GATC	6 cut(s)	61, 276, 598, 835, 904, 1365
Sau96I	GGNCC	1 cut(s)	1384
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	510, 1082
SfaNI	GCATC	4 cut(s)	277, 347, 1054, 1219
SfcI	CTRYAG	3 cut(s)	38, 282, 798
SfoI	GGCGCC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	1384
SmiMI	CAYNNNNRTG	2 cut(s)	559, 1014
SsiI	CCGC	2 cut(s)	114, 1196
SspDI	GGCGCC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	508, 1080
StyI	CCWWGG	2 cut(s)	180, 226
TaaI	ACNGT	5 cut(s)	329, 409, 457, 1262, 1294
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	384, 501, 591
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	95, 1118
TscAI	CASTG	3 cut(s)	83, 286, 493
TseI	GCWGC	5 cut(s)	290, 360, 464, 797, 890
TspDTI	ATGAA	3 cut(s)	326, 1035, 1199
TspRI	CASTG	3 cut(s)	83, 286, 493
VpaK11BI	GGWCC	1 cut(s)	1384
XapI	RAATTY	2 cut(s)	781, 988
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.