Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

57357957 .. 57358470

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG404900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGAAGGGAGTGCAACAAGGCCAAAATTTGCCGCCCGATTTGACCCAAGTCATTGATCAGTTGGAGCGCCACTGCTTGGCTCCGGATGGTTCCCTAGTCTCTAAATCCGCCTTCTACGACCTCCAACTGGCAAGAGAGGAAATGTCCAAGGAAAGACTGCGTTACTTGGAAGCAATGGCACTTTATAGCGAGGCAATGGCAATGGTGGAAGAGTACCAGCAAGCGGTTTCGATGGCTAACCTTGGAGGAAGTCGAGATGTGCAGGGTGTCTATCAGCAATTGGGCTTGAACAACTCTCCACAGGTTCGAGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

4.84

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	3 cut(s)	35, 111, 227
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	16
BccI	CCATC	2 cut(s)	83, 229
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	84, 94
BoxI	GACNNNNGTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	150, 244
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 130, 226
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	3 cut(s)	183, 204, 210
BseAI	TCCGGA	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	150, 244
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
BseMI	GCAATG	3 cut(s)	183, 204, 210
BseNI	ACTGG	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	3 cut(s)	35, 111, 227
BspANI	GGCC	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	84, 94
BsrDI	GCAATG	3 cut(s)	183, 204, 210
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	150, 244
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	150, 244
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	217
CviJI	RGCY	5 cut(s)	24, 83, 239, 288, 314
CviKI_1	RGCY	5 cut(s)	24, 83, 239, 288, 314
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	150, 244
EcoT14I	CCWWGG	2 cut(s)	150, 244
ErhI	CCWWGG	2 cut(s)	150, 244
FaiI	YATR	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	86, 257
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	16, 265
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	67, 88
LpnPI	CCDG	5 cut(s)	99, 116, 233, 251, 290
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	2 cut(s)	28, 281
MmeI	TCCRAC	2 cut(s)	45, 151
MnlI	CCTC	4 cut(s)	133, 134, 187, 242
MroI	TCCGGA	1 cut(s)	85
MspI	CCGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	281
NdeII	GATC	1 cut(s)	58
NlaIV	GGNNCC	2 cut(s)	84, 94
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	84, 94
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	58
SetI	ASST	4 cut(s)	126, 246, 309, 316
Sse9I	AATT	2 cut(s)	28, 281
SsiI	CCGC	3 cut(s)	35, 111, 227
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	2 cut(s)	150, 244
TaqI	TCGA	3 cut(s)	233, 256, 310
TasI	AATT	2 cut(s)	28, 281
TauI	GCSGC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	80
TspRI	CASTG	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.