Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

53636185 .. 53646389

Gene Structure 10205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTTCCCTCGTCTCTAAATCCGCCTTCTACGACCTCCAACTGGCAAGAGAGGAAATGTCCAAGGAAAGACTGCGTTACTTGGAAGCAATGGCACTTTATAGCGATGCAATGGCAATGGTGGAAGAGTACCAGCAAGCGGTTTCGATGGCTAACCTTTGGAGGAAGTCGAGATGTGCAGGGTGTGTATCGGCAATTGGGCTTGAACAACTCTCCACAGCTGTATGAGACATTAGAGCATCGCATGATCATTGCAGAAGCAGCTCAACGGTTGAGGCTTCCTCTGATCTCTAAAGACGGTGAAATTCATGAGGAAGAAATTGAGAAATGCAGTGTGTTGTCACGGACTTCCCTTTATAGTACTAGCACTGGTACAATCAGCTCAAGTTCCAACTCGACAAGCTATCCTACTGCAACTGGCACCAGTAGTGCAGCAAACAACCATCTTTCACTTGGTGCTTCTGATGTTGTGGAACCTGGAGTTGGTGGTGTTCCCAATTGTTTTCTAGGAATCACACCTGCTTATTTATGGCAAACAAAGCTGCAGCAAACACCATTTCTCCCTGGTACAATGTTCATTCTGGTGTCTCTTTCACGTGAGATTGAGGCTCGTTTGCAAGCTAAATGTGACAAGCTAGCTGATGCAATGAAAAGGGATGAAGCAGCTTTTCAAGACGATCTATATTCTGCAGATAGAAAATTTGCTGAATATTATAACGAAGATCTGCAAAAAACATGGCTGTGCAAAAGGTGTGAGACCATGAGTGCAAAATTGAGGGTTCTGGAGAATGTTCTCCTTCTTGAAACTTATACTAACGAGTCAATACCAGCCCTTCATAAAATAAGGAAATATCTTCTTGAAGCTACAGAAGAAACTTCTATGGCTTACAATAAAGCGGTTACTCGTCTTCGAGAGTATCAGGGTGTTGATCCTCACTTCGATACAATTGCAAGGCAGTGCCACGATATTGTAAAGTCGCCCAAGCCTCCAATCGATTCATCACCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

337

Amino Acids

38.16

Weight (kDa)

8.04

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS4	PF14735	157 - 219	3.8e-08	HAUS augmin-like complex subunit 4
HAUS4	PF14735	241 - 325	2.8e-31	HAUS augmin-like complex subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	419
AciI	CCGC	3 cut(s)	23, 139, 896
AclWI	GGATC	1 cut(s)	923
AcsI	RAATTY	2 cut(s)	303, 698
AcvI	CACGTG	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	4 cut(s)	130, 361, 373, 568
AfiI	CCNNNNNNNGG	3 cut(s)	42, 138, 482
AgsI	TTSAA	4 cut(s)	205, 671, 803, 860
AjnI	CCWGG	2 cut(s)	475, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
Alw26I	GTCTC	4 cut(s)	18, 221, 591, 749
AlwI	GGATC	1 cut(s)	923
ApeKI	GCWGC	5 cut(s)	260, 431, 541, 544, 662
ApoI	RAATTY	2 cut(s)	303, 698
AsuHPI	GGTGA	2 cut(s)	311, 993
AsuNHI	GCTAGC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	419
BbrPI	CACGTG	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	899
BbvI	GCAGC	5 cut(s)	272, 443, 528, 556, 674
BccI	CCATC	2 cut(s)	141, 450
BcgI	CGANNNNNNTGC	2 cut(s)	929, 963
BciT130I	CCWGG	2 cut(s)	477, 564
BclI	TGATCA	1 cut(s)	246
BcoDI	GTCTC	4 cut(s)	18, 221, 591, 749
BfaI	CTAG	3 cut(s)	363, 506, 635
BfmI	CTRYAG	3 cut(s)	542, 687, 864
BfuAI	ACCTGC	1 cut(s)	526
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	5 cut(s)	261, 432, 542, 545, 663
BlsI	GCNGC	5 cut(s)	262, 433, 543, 546, 664
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	477, 564
BmiI	GGNNCC	3 cut(s)	6, 421, 474
BmrFI	CCNGG	2 cut(s)	477, 564
BmsI	GCATC	3 cut(s)	96, 247, 631
BmtI	GCTAGC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	899
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	2 cut(s)	498, 803
BpuEI	CTTGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	993
BsaAI	YACGTR	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	62, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 138, 482
Bse1I	ACTGG	4 cut(s)	47, 373, 421, 423
Bse3DI	GCAATG	5 cut(s)	95, 116, 122, 249, 651
BseBI	CCWGG	2 cut(s)	477, 564
BseCI	ATCGAT	1 cut(s)	993
BseDI	CCNNGG	2 cut(s)	62, 562
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	3 cut(s)	42, 138, 482
BseMI	GCAATG	5 cut(s)	95, 116, 122, 249, 651
BseNI	ACTGG	4 cut(s)	47, 373, 421, 423
BseXI	GCAGC	5 cut(s)	272, 443, 528, 556, 674
BsgI	GTGCAG	2 cut(s)	197, 450
BshNI	GGYRCC	1 cut(s)	419
BshVI	ATCGAT	1 cut(s)	993
BslI	CCNNNNNNNGG	3 cut(s)	42, 138, 482
BsmAI	GTCTC	4 cut(s)	18, 221, 591, 749
BsmBI	CGTCTC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	749
Bsp143I	GATC	5 cut(s)	246, 285, 676, 721, 928
BspACI	CCGC	3 cut(s)	23, 139, 896
BspDI	ATCGAT	1 cut(s)	993
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	6, 421, 474
BspMAI	CTGCAG	2 cut(s)	546, 691
BspMI	ACCTGC	1 cut(s)	526
BspOI	GCTAGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	5 cut(s)	95, 116, 122, 249, 651
BsrI	ACTGG	4 cut(s)	47, 373, 421, 423
BssECI	CCNNGG	2 cut(s)	62, 562
BssMI	GATC	5 cut(s)	246, 285, 676, 721, 928
BssT1I	CCWWGG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	477, 564
Bst4CI	ACNGT	2 cut(s)	270, 299
Bst6I	CTCTTC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	137, 618, 636
BstDEI	CTNAG	1 cut(s)	1008
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	5 cut(s)	249, 288, 679, 724, 931
BstMAI	GTCTC	4 cut(s)	18, 221, 591, 749
BstMBI	GATC	5 cut(s)	246, 285, 676, 721, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 538
BstNI	CCWGG	2 cut(s)	477, 564
BstSCI	CCNGG	2 cut(s)	475, 562
BstSFI	CTRYAG	3 cut(s)	542, 687, 864
BstV1I	GCAGC	5 cut(s)	272, 443, 528, 556, 674
BstV2I	GAAGAC	1 cut(s)	899
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
Bsu15I	ATCGAT	1 cut(s)	993
BsuTUI	ATCGAT	1 cut(s)	993
BtgZI	GCGATG	2 cut(s)	119, 224
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	2 cut(s)	337, 962
BtsIMutI	CAGTG	3 cut(s)	337, 366, 962
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	3 cut(s)	137, 618, 636
CciI	TCATGA	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	993
Csp6I	GTAC	4 cut(s)	129, 360, 372, 567
CviAII	CATG	4 cut(s)	244, 308, 735, 760
CviQI	GTAC	4 cut(s)	129, 360, 372, 567
DdeI	CTNAG	1 cut(s)	1008
DpnI	GATC	5 cut(s)	248, 287, 678, 723, 930
DpnII	GATC	5 cut(s)	246, 285, 676, 721, 928
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	749
Eco72I	CACGTG	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	475, 562
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	4 cut(s)	247, 311, 738, 763
FatI	CATG	4 cut(s)	243, 307, 734, 759
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	5 cut(s)	261, 432, 542, 545, 663
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	5 cut(s)	261, 432, 542, 545, 663
FspBI	CTAG	3 cut(s)	363, 506, 635
GluI	GCNGC	5 cut(s)	261, 432, 542, 545, 663
GsuI	CTGGAG	2 cut(s)	498, 803
Hin1II	CATG	4 cut(s)	247, 311, 738, 763
HinfI	GANTC	3 cut(s)	510, 818, 995
HphI	GGTGA	2 cut(s)	311, 993
Hpy188I	TCNGA	2 cut(s)	285, 463
Hpy188III	TCNNGA	7 cut(s)	170, 308, 671, 782, 800, 857, 911
HpyAV	CCTTC	3 cut(s)	36, 806, 842
HpyCH4III	ACNGT	2 cut(s)	270, 299
HpyCH4IV	ACGT	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 538
HpyF3I	CTNAG	1 cut(s)	1008
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	4 cut(s)	247, 311, 738, 763
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	246, 285, 676, 721, 928
Lsp1109I	GCAGC	5 cut(s)	272, 443, 528, 556, 674
LweI	GCATC	3 cut(s)	96, 247, 631
MaeI	CTAG	3 cut(s)	363, 506, 635
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	4 cut(s)	76, 339, 626, 898
MalI	GATC	5 cut(s)	248, 287, 678, 723, 930
MboI	GATC	5 cut(s)	246, 285, 676, 721, 928
MboII	GAAGA	6 cut(s)	136, 326, 731, 845, 881, 899
MfeI	CAATTG	3 cut(s)	194, 496, 945
MflI	RGATCY	1 cut(s)	721
MluCI	AATT	7 cut(s)	194, 303, 318, 496, 698, 770, 945
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	2 cut(s)	63, 414
MslI	CAYNNNNRTG	2 cut(s)	581, 739
MspA1I	CMGCKG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	477, 564
MunI	CAATTG	3 cut(s)	194, 496, 945
MvaI	CCWGG	2 cut(s)	477, 564
MwoI	GCNNNNNNNGC	2 cut(s)	260, 538
NdeII	GATC	5 cut(s)	246, 285, 676, 721, 928
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	4 cut(s)	247, 311, 738, 763
NlaIV	GGNNCC	3 cut(s)	6, 421, 474
NmuCI	GTSAC	2 cut(s)	339, 626
PagI	TCATGA	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	510, 995
PkrI	GCNGC	5 cut(s)	262, 433, 543, 546, 664
PleI	GAGTC	1 cut(s)	826
PmaCI	CACGTG	1 cut(s)	596
PmlI	CACGTG	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	826
Ppu21I	YACGTR	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	475, 562
PspCI	CACGTG	1 cut(s)	596
PspGI	CCWGG	2 cut(s)	475, 562
PspN4I	GGNNCC	3 cut(s)	6, 421, 474
PstI	CTGCAG	2 cut(s)	546, 691
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	4 cut(s)	130, 361, 373, 568
RsaNI	GTAC	4 cut(s)	129, 360, 372, 567
RseI	CAYNNNNRTG	2 cut(s)	581, 739
SatI	GCNGC	5 cut(s)	261, 432, 542, 545, 663
Sau3AI	GATC	5 cut(s)	246, 285, 676, 721, 928
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	2 cut(s)	477, 564
SfaNI	GCATC	3 cut(s)	96, 247, 631
SfcI	CTRYAG	3 cut(s)	542, 687, 864
SmiMI	CAYNNNNRTG	2 cut(s)	581, 739
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	7 cut(s)	194, 303, 318, 496, 698, 770, 945
SsiI	CCGC	3 cut(s)	23, 139, 896
SspI	AATATT	1 cut(s)	710
SspMI	CTAG	3 cut(s)	363, 506, 635
StyD4I	CCNGG	2 cut(s)	475, 562
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	270, 299
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	6 cut(s)	145, 169, 395, 910, 939, 993
TasI	AATT	7 cut(s)	194, 303, 318, 496, 698, 770, 945
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	510, 995
TscAI	CASTG	3 cut(s)	337, 373, 962
TseFI	GTSAC	2 cut(s)	339, 626
TseI	GCWGC	5 cut(s)	260, 431, 541, 544, 662
Tsp45I	GTSAC	2 cut(s)	339, 626
TspDTI	ATGAA	6 cut(s)	296, 565, 662, 672, 824, 987
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	3 cut(s)	337, 373, 962
XapI	RAATTY	2 cut(s)	303, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XspI	CTAG	3 cut(s)	363, 506, 635
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.