Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042828.1

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 432

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042828.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atggtgaagggagttcaacaaggccaaaacttgccggccgatttgacccaagtcattgatcagttggagcgccactgcttggctcccgatggttccctcgtctctaaatccgccttctacgacctccaactggcaagggaggaaatgtccaaggaaagactgcgatacttggaagcaatggcactgtatagcgaggcaatggcaatggtggaagagtaccagcaagcggtttcgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

79

Amino Acids

8.96

Weight (kDa)

4.64

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	2 cut(s)	111, 227
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
AgsI	TTSAA	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	2 cut(s)	22, 36
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	16
BccI	CCATC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	84, 94
BoxI	GACNNNNGTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 130, 226
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	3 cut(s)	183, 204, 210
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
BseMI	GCAATG	3 cut(s)	183, 204, 210
BseNI	ACTGG	1 cut(s)	135
BseX3I	CGGCCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	24, 38
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	79, 130, 226
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	24, 38
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	111, 227
BspANI	GGCC	2 cut(s)	24, 38
BspLI	GGNNCC	2 cut(s)	84, 94
BsrDI	GCAATG	3 cut(s)	183, 204, 210
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	36, 225
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	39
BstPAI	GACNNNNGTC	1 cut(s)	50
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	24, 38
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 182
Cac8I	GCNNGC	2 cut(s)	36, 225
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	217
CviJI	RGCY	3 cut(s)	24, 38, 83
CviKI_1	RGCY	3 cut(s)	24, 38, 83
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	150
Eco52I	CGGCCG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	106
FaiI	YATR	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	58
GlaI	GCGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	24, 38
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	186
HspAI	GCGC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	67, 88
LpnPI	CCDG	3 cut(s)	48, 116, 233
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	45, 151
MnlI	CCTC	4 cut(s)	107, 133, 134, 187
MroNI	GCCGGC	1 cut(s)	34
MspI	CCGG	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	36
NdeII	GATC	1 cut(s)	58
NgoMIV	GCCGGC	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	84, 94
PdiI	GCCGGC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	84, 94
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
Sau3AI	GATC	1 cut(s)	58
SetI	ASST	1 cut(s)	126
SsiI	CCGC	2 cut(s)	111, 227
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	80, 189
TspRI	CASTG	2 cut(s)	80, 189
Van91I	CCANNNNNTGG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.