Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

44787341 .. 44788997

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0355700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAACTTCTTTACTGCATCTTCGTTTTCCTAATTCCTCTTCTTGCTGTACCAGCTTATGCAAGAGTTTTATCAGTGAGACCTGGAGACGAGTTGGCTGTGTTTATCACCATCTACAATTATTATGGACGGAAAACTCCAAGCCCGCCGCCATCCCCTTCCGTGTCTCCTTCACCCCACCATGCTATAGATGGCGCTACCGCCAACTCTTACTCGAATATGAGTCGAACCAATGACTCAGCAACTCCACAAACAAGCCAGAGCGATCAACGTATCTCAAGGAATACTGCCTCTCCACCACCAACACCAAAGCCATCACCAACACCGATACAAAGGACTCGAGCTCCACCACCACCACCACCAAAGACATCACCAACACCAACACCGATACAAAGGACTCGAGCTCCACCACCACCACCTAAGGGGTCAACAACACCAACGCAAAGGACTCGAGCTCCACCGCCACCGGCCAAGCCATCACCGTCACACGGACAGCTAGGAATATGGAGTAGTAGCACTGACACTAGCACGACTCCAACACCACCATCACTGCAATCAGCGAACCAAATGATAGAAAAGTTTTCTGGAACTACTCGAGCTCCGCCGCCGCCGCCCAATTCAGCACCGCCACATGGACAACTAGGAAGTACTTTCCTCTGCAATAGGTTGGTATCTATGGTAACTGATTACGGCTGCAGAAAACCAAGATCATCGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

240

Amino Acids

25.58

Weight (kDa)

10.53

Isoelectric Point (pI)

69.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	146, 149, 201, 461, 602, 605, 608, 611, 626
AcoI	YGGCCR	1 cut(s)	468
AfaI	GTAC	2 cut(s)	51, 649
AfiI	CCNNNNNNNGG	3 cut(s)	422, 488, 632
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	6 cut(s)	56, 344, 404, 455, 496, 599
AluI	AGCT	6 cut(s)	56, 344, 404, 455, 496, 599
Alw21I	GWGCWC	4 cut(s)	346, 406, 457, 601
Alw26I	GTCTC	3 cut(s)	73, 81, 171
Ama87I	CYCGRG	4 cut(s)	339, 399, 450, 594
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	5 cut(s)	100, 165, 309, 363, 471
AvaI	CYCGRG	4 cut(s)	339, 399, 450, 594
AxyI	CCTNAGG	1 cut(s)	420
BanII	GRGCYC	4 cut(s)	346, 406, 457, 601
Bbv12I	GWGCWC	4 cut(s)	346, 406, 457, 601
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	6 cut(s)	119, 160, 185, 322, 484, 553
BceAI	ACGGC	1 cut(s)	706
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	73, 81, 171
BfaI	CTAG	3 cut(s)	497, 525, 641
BfmI	CTRYAG	2 cut(s)	186, 694
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	5 cut(s)	149, 605, 608, 611, 694
BlsI	GCNGC	5 cut(s)	150, 606, 609, 612, 695
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	4 cut(s)	339, 399, 450, 594
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 488, 632
Bse118I	RCCGGY	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	422, 488, 632
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	680
BshFI	GGCC	1 cut(s)	470
BsiHKAI	GWGCWC	4 cut(s)	346, 406, 457, 601
BsiHKCI	CYCGRG	4 cut(s)	339, 399, 450, 594
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	422, 488, 632
BsmAI	GTCTC	3 cut(s)	73, 81, 171
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	4 cut(s)	339, 399, 450, 594
Bsp1286I	GDGCHC	4 cut(s)	346, 406, 457, 601
Bsp143I	GATC	2 cut(s)	265, 707
BspACI	CCGC	9 cut(s)	146, 149, 201, 461, 602, 605, 608, 611, 626
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	466
BssMI	GATC	2 cut(s)	265, 707
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	238, 420
BstF5I	GGATG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	268, 710
BstMAI	GTCTC	3 cut(s)	73, 81, 171
BstMBI	GATC	2 cut(s)	265, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 610
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	2 cut(s)	186, 694
BstV1I	GCAGC	1 cut(s)	680
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	3 cut(s)	81, 516, 548
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	50, 648
CviAII	CATG	2 cut(s)	182, 632
CviQI	GTAC	2 cut(s)	50, 648
DdeI	CTNAG	2 cut(s)	238, 420
DpnI	GATC	2 cut(s)	267, 709
DpnII	GATC	2 cut(s)	265, 707
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	591
Ecl136II	GAGCTC	4 cut(s)	344, 404, 455, 599
Eco24I	GRGCYC	4 cut(s)	346, 406, 457, 601
Eco31I	GGTCTC	1 cut(s)	73
Eco53kI	GAGCTC	4 cut(s)	344, 404, 455, 599
Eco81I	CCTNAGG	1 cut(s)	420
Eco88I	CYCGRG	4 cut(s)	339, 399, 450, 594
EcoICRI	GAGCTC	4 cut(s)	344, 404, 455, 599
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	4 cut(s)	346, 406, 457, 601
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	185, 635
FaiI	YATR	8 cut(s)	60, 126, 183, 188, 221, 505, 633, 677
FatI	CATG	2 cut(s)	181, 631
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	149, 605, 608, 611, 694
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	4 cut(s)	346, 406, 457, 601
Fsp4HI	GCNGC	5 cut(s)	149, 605, 608, 611, 694
FspBI	CTAG	3 cut(s)	497, 525, 641
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	149, 605, 608, 611, 694
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	467
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	185, 635
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	6 cut(s)	223, 236, 337, 397, 448, 532
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	5 cut(s)	100, 165, 309, 363, 471
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188III	TCNNGA	1 cut(s)	585
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	2 cut(s)	168, 180
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	18, 62, 553, 660, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 610
HpyF3I	CTNAG	2 cut(s)	238, 420
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	185, 635
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	265, 707
LmnI	GCTCC	4 cut(s)	349, 409, 460, 604
LpnPI	CCDG	6 cut(s)	66, 69, 96, 272, 480, 570
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	3 cut(s)	497, 525, 641
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	483, 679
MalI	GATC	2 cut(s)	267, 709
MboI	GATC	2 cut(s)	265, 707
MboII	GAAGA	2 cut(s)	13, 32
MhlI	GDGCHC	4 cut(s)	346, 406, 457, 601
MluCI	AATT	3 cut(s)	33, 118, 616
MlyI	GAGTC	6 cut(s)	230, 232, 331, 391, 442, 526
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	3 cut(s)	48, 301, 665
MseI	TTAA	1 cut(s)	721
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	53, 610
NdeII	GATC	2 cut(s)	265, 707
NlaIII	CATG	2 cut(s)	185, 635
NmuCI	GTSAC	1 cut(s)	483
PaeR7I	CTCGAG	4 cut(s)	339, 399, 450, 594
PkrI	GCNGC	5 cut(s)	150, 606, 609, 612, 695
PleI	GAGTC	6 cut(s)	230, 231, 331, 391, 442, 526
PpsI	GAGTC	6 cut(s)	230, 231, 331, 391, 442, 526
Psp124BI	GAGCTC	4 cut(s)	346, 406, 457, 601
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspXI	VCTCGAGB	4 cut(s)	339, 399, 450, 594
PstI	CTGCAG	1 cut(s)	698
RsaI	GTAC	2 cut(s)	51, 649
RsaNI	GTAC	2 cut(s)	50, 648
SacI	GAGCTC	4 cut(s)	346, 406, 457, 601
SaqAI	TTAA	1 cut(s)	721
SatI	GCNGC	5 cut(s)	149, 605, 608, 611, 694
Sau3AI	GATC	2 cut(s)	265, 707
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	6 cut(s)	230, 232, 331, 391, 442, 526
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	4 cut(s)	346, 406, 457, 601
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	2 cut(s)	186, 694
Sfr274I	CTCGAG	4 cut(s)	339, 399, 450, 594
SlaI	CTCGAG	4 cut(s)	339, 399, 450, 594
SmlI	CTYRAG	5 cut(s)	277, 339, 399, 450, 594
SmoI	CTYRAG	5 cut(s)	277, 339, 399, 450, 594
Sse9I	AATT	3 cut(s)	33, 118, 616
SsiI	CCGC	9 cut(s)	146, 149, 201, 461, 602, 605, 608, 611, 626
SspMI	CTAG	3 cut(s)	497, 525, 641
SstI	GAGCTC	4 cut(s)	346, 406, 457, 601
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	6 cut(s)	215, 226, 340, 400, 451, 595
TasI	AATT	3 cut(s)	33, 118, 616
TatI	WGTACW	1 cut(s)	647
TauI	GCSGC	4 cut(s)	151, 607, 610, 613
Tru1I	TTAA	1 cut(s)	721
Tru9I	TTAA	1 cut(s)	721
TscAI	CASTG	3 cut(s)	81, 523, 555
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	145, 151, 504
TspRI	CASTG	3 cut(s)	81, 523, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XhoI	CTCGAG	4 cut(s)	339, 399, 450, 594
XspI	CTAG	3 cut(s)	497, 525, 641
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.