RLG00000019797

HAUS augmin-like complex subunit 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002315
Physical Location & Seq
Forward (+)
56844530 .. 56848527
3998 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019797

Sequence Viewer

Length: 1299 bp
ATGGTGAAGGGAGTTCAACAAGGCCAAAACTTGCCGGCCGATTTGACCCAAGTCATTGATCAGTTGGAGCGCCACTGCTTGGCTCCCGATGGTTCCCTCGTCTCTAAATCCGCCTTCTACGACCTCCAACTGGCAAGGGAGGAAATGTCCAAGGAAAGACTGCGTTACTTGGAAGCAATGGCACTGTATAGCGAGGCAATGGCAATGGTGGAAGAGTACCAGCAAGCGGTTTCGATGGCTAACCTTGGAGGAAGTCGAGATGTGCAGGGTGTCTATCAGCAATTGGGCTTGAAGAACTCTCCACAGCTGTATGAGACATTAGAGCATCGCATGATCGTTGCAGAAGCAGCTCAAAGGTTGAGGCTTCCTCTGATCTCTAAAGATGGTGAAATCCATGAGGAAGAAATTGAGAAATGCAGTGTTTTGTCACGGACTTCCCTTGATAGTACTAGCACTGGTACAATCAGCTCAAGTTCCAACTCGACAAGCTACACTACTGCAACTGGCACCGCTAGTGCAGCAAACAACAATCTTTCACTTGGTGCTTCTGATGTTGTGGAACCTGGAGTTGGTGGTGTTCCCAATTGTTTTCTTGGAATTACACCTGCTTATCTATGGCAAACACAGCTGCAGCAAACTCCATTCTCCCCGGATATGACAGAATATCAGGTGTCTCTTTCACGTGAGATTGAGGCTCGTTTGCAAGCTAAATGTGACAAGCTAGCTGATGCAGTTATAATGGATGACACTGACTCATCATCTGGACATCAAAATCTAAATGCTCGTCTTCCAGAGAGGGTAAAGTTAATAATTGAGGAGATGGAAAGGGATGAAGCAGCTCTTCAAGACGATCTATATTCTGCAGATAGAAAATTTGCTGAATATTATAACGTCTTAGAGCAGATTCTGGCAGTGCTTATTAAGCTGGTCAAAGATTTGAAGTTGCAGCATCAACATAAATATGAAGATCTGCAAAAAACATGGCTGTGCAAAAGGTGTGAGACCATGAGTGCAAAATTGAGGGTTCTCGAGAATGTTCTCCTTCTTGAAACCTATACTAATGAGTCAATACCAGCCCTTCATAAAATAAGGAAATATCTTCTTGAAGCTACAGAAGAAGCTTCTATGGCTTATAATAAAGCGGTTACTCGTCTTCGAGAGTATCAGGGTGTTGATCCTCACTTCGATACAATTGCAAGGCAGTACCATGATATTGTAAAGAAATTGGAAAATATGCAATGGACAATCCACCAGGTTGAAATGGACCTAAAACGTCTCCCTGATCACGCAAATGTATAG

Protein Analysis

433

Amino Acids

48.8

Weight (kDa)

5.14

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS4 PF14735 186 - 421 3.6e-82 HAUS augmin-like complex subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 737, 888, 1134
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 506
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 4 cut(s) 111, 227, 510, 1142
AclWI GGATC 1 cut(s) 1169
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 872
AcvI CACGTG 1 cut(s) 683
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 4 cut(s) 218, 448, 460, 1205
AfiI CCNNNNNNNGG 4 cut(s) 79, 130, 226, 569
AgsI TTSAA 7 cut(s) 17, 292, 845, 940, 1049, 1106, 1259
AjnI CCWGG 2 cut(s) 562, 1251
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
Alw26I GTCTC 5 cut(s) 106, 308, 678, 995, 1280
AlwI GGATC 1 cut(s) 1169
AlwNI CAGNNNCTG 1 cut(s) 907
Ama87I CYCGRG 1 cut(s) 1028
AoxI GGCC 2 cut(s) 22, 36
ApeKI GCWGC 6 cut(s) 347, 518, 628, 631, 836, 946
ApoI RAATTY 1 cut(s) 872
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 1264
AsuC2I CCSGG 1 cut(s) 650
AsuHPI GGTGA 2 cut(s) 16, 398
AsuNHI GCTAGC 1 cut(s) 721
AvaI CYCGRG 1 cut(s) 1028
AvaII GGWCC 1 cut(s) 1264
BanI GGYRCC 1 cut(s) 506
BbrPI CACGTG 1 cut(s) 683
BbsI GAAGAC 2 cut(s) 779, 1145
BbvI GCAGC 6 cut(s) 359, 530, 615, 643, 848, 958
BccI CCATC 4 cut(s) 83, 229, 377, 814
BcgI CGANNNNNNTGC 2 cut(s) 1175, 1209
BciT130I CCWGG 2 cut(s) 564, 1253
BclI TGATCA 2 cut(s) 58, 1282
BcnI CCSGG 1 cut(s) 650
BcoDI GTCTC 5 cut(s) 106, 308, 678, 995, 1280
BfaI CTAG 3 cut(s) 450, 513, 722
BfmI CTRYAG 3 cut(s) 629, 861, 1110
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 967
BisI GCNGC 6 cut(s) 348, 519, 629, 632, 837, 947
BlsI GCNGC 6 cut(s) 349, 520, 630, 633, 838, 948
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 564, 650, 1253
Bme18I GGWCC 1 cut(s) 1264
BmeT110I CYCGRG 1 cut(s) 1028
BmgT120I GGNCC 1 cut(s) 1264
BmiI GGNNCC 4 cut(s) 84, 94, 508, 561
BmrFI CCNGG 3 cut(s) 564, 650, 1253
BmsI GCATC 3 cut(s) 334, 718, 958
BmtI GCTAGC 1 cut(s) 725
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 779, 1145
BplI GAGNNNNNCTC 2 cut(s) 352, 384
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 650
BsaAI YACGTR 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 3 cut(s) 150, 244, 648
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 130, 226, 569
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 135, 460, 508
Bse3DI GCAATG 4 cut(s) 183, 204, 210, 1244
BseBI CCWGG 2 cut(s) 564, 1253
BseDI CCNNGG 3 cut(s) 150, 244, 648
BseGI GGATG 2 cut(s) 748, 835
BseLI CCNNNNNNNGG 4 cut(s) 79, 130, 226, 569
BseMI GCAATG 4 cut(s) 183, 204, 210, 1244
BseNI ACTGG 3 cut(s) 135, 460, 508
BseRI GAGGAG 1 cut(s) 830
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 6 cut(s) 359, 530, 615, 643, 848, 958
BsgI GTGCAG 2 cut(s) 284, 537
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 24, 38
BshNI GGYRCC 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 1028
BsiSI CCGG 2 cut(s) 35, 650
BslI CCNNNNNNNGG 4 cut(s) 79, 130, 226, 569
BsmAI GTCTC 5 cut(s) 106, 308, 678, 995, 1280
BsmBI CGTCTC 2 cut(s) 106, 1280
BsnI GGCC 2 cut(s) 24, 38
Bso31I GGTCTC 1 cut(s) 995
BsoBI CYCGRG 1 cut(s) 1028
Bsp143I GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
BspACI CCGC 4 cut(s) 111, 227, 510, 1142
BspANI GGCC 2 cut(s) 24, 38
BspLI GGNNCC 4 cut(s) 84, 94, 508, 561
BspMAI CTGCAG 2 cut(s) 633, 865
BspMI ACCTGC 1 cut(s) 613
BspOI GCTAGC 1 cut(s) 725
BspPI GGATC 1 cut(s) 1169
BspQI GCTCTTC 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 4 cut(s) 183, 204, 210, 1244
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 3 cut(s) 135, 460, 508
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 150, 244, 648
BssMI GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
BssT1I CCWWGG 2 cut(s) 150, 244
Bst2UI CCWGG 2 cut(s) 564, 1253
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 2 cut(s) 207, 846
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 4 cut(s) 36, 225, 705, 723
BstDEI CTNAG 1 cut(s) 895
BstF5I GGATG 2 cut(s) 748, 835
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 7 cut(s) 61, 336, 375, 853, 970, 1177, 1285
BstMAI GTCTC 5 cut(s) 106, 308, 678, 995, 1280
BstMBI GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 5 cut(s) 347, 518, 625, 922, 1127
BstNI CCWGG 2 cut(s) 564, 1253
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 562, 648, 1251
BstSFI CTRYAG 3 cut(s) 629, 861, 1110
BstV1I GCAGC 6 cut(s) 359, 530, 615, 643, 848, 958
BstV2I GAAGAC 2 cut(s) 779, 1145
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 2 cut(s) 24, 38
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 748, 835
BtsI GCAGTG 3 cut(s) 73, 424, 918
BtsIMutI CAGTG 6 cut(s) 73, 182, 424, 453, 747, 918
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 4 cut(s) 36, 225, 705, 723
CaiI CAGNNNCTG 1 cut(s) 907
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 1264
CsiI ACCWGGT 1 cut(s) 1251
Csp6I GTAC 4 cut(s) 217, 447, 459, 1204
CviAII CATG 5 cut(s) 331, 395, 981, 1006, 1208
CviQI GTAC 4 cut(s) 217, 447, 459, 1204
DdeI CTNAG 1 cut(s) 895
DpnI GATC 7 cut(s) 60, 335, 374, 852, 969, 1176, 1284
DpnII GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
DraIII CACNNNGTG 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 207, 846
EarI CTCTTC 2 cut(s) 207, 846
EciI GGCGGA 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 150, 244
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 1 cut(s) 1264
Eco52I CGGCCG 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 1028
EcoRII CCWGG 2 cut(s) 562, 1251
EcoT14I CCWWGG 2 cut(s) 150, 244
ErhI CCWWGG 2 cut(s) 150, 244
Esp3I CGTCTC 2 cut(s) 106, 1280
FaeI CATG 5 cut(s) 334, 398, 984, 1009, 1211
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FatI CATG 5 cut(s) 330, 394, 980, 1005, 1207
FbaI TGATCA 2 cut(s) 58, 1282
Fnu4HI GCNGC 6 cut(s) 348, 519, 629, 632, 837, 947
FokI GGATG 2 cut(s) 755, 842
Fsp4HI GCNGC 6 cut(s) 348, 519, 629, 632, 837, 947
FspBI CTAG 3 cut(s) 450, 513, 722
GlaI GCGC 1 cut(s) 71
GluI GCNGC 6 cut(s) 348, 519, 629, 632, 837, 947
GsuI CTGGAG 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 24, 38
HapII CCGG 2 cut(s) 35, 650
HhaI GCGC 1 cut(s) 72
Hin1II CATG 5 cut(s) 334, 398, 984, 1009, 1211
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 3 cut(s) 752, 904, 1064
HpaII CCGG 2 cut(s) 35, 650
HphI GGTGA 2 cut(s) 16, 398
Hpy188I TCNGA 2 cut(s) 372, 550
HpyAV CCTTC 3 cut(s) 124, 1052, 1088
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 3 cut(s) 682, 891, 1273
HpyF10VI GCNNNNNNNGC 5 cut(s) 347, 518, 625, 922, 1127
HpyF3I CTNAG 1 cut(s) 895
HpySE526I ACGT 3 cut(s) 682, 891, 1273
Hsp92II CATG 5 cut(s) 334, 398, 984, 1009, 1211
HspAI GCGC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Ksp22I TGATCA 2 cut(s) 58, 1282
Kzo9I GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 2 cut(s) 67, 88
Lsp1109I GCAGC 6 cut(s) 359, 530, 615, 643, 848, 958
LweI GCATC 3 cut(s) 334, 718, 958
MabI ACCWGGT 1 cut(s) 1251
MaeI CTAG 3 cut(s) 450, 513, 722
MaeII ACGT 3 cut(s) 682, 891, 1273
MaeIII GTNAC 4 cut(s) 164, 426, 713, 1144
MalI GATC 7 cut(s) 60, 335, 374, 852, 969, 1176, 1284
MboI GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
MboII GAAGA 9 cut(s) 224, 304, 413, 779, 833, 977, 1091, 1127, 1145
MfeI CAATTG 3 cut(s) 281, 583, 1191
MflI RGATCY 1 cut(s) 967
MluCI AATT 9 cut(s) 281, 405, 583, 597, 810, 872, 1016, 1191, 1223
MlyI GAGTC 2 cut(s) 746, 1073
MmeI TCCRAC 3 cut(s) 45, 151, 501
MroNI GCCGGC 1 cut(s) 34
MseI TTAA 2 cut(s) 806, 921
MslI CAYNNNNRTG 3 cut(s) 960, 985, 1290
MspA1I CMGCKG 2 cut(s) 307, 628
MspI CCGG 2 cut(s) 35, 650
MspR9I CCNGG 3 cut(s) 564, 650, 1253
MunI CAATTG 3 cut(s) 281, 583, 1191
MvaI CCWGG 2 cut(s) 564, 1253
MwoI GCNNNNNNNGC 5 cut(s) 347, 518, 625, 922, 1127
NaeI GCCGGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 650
NdeII GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
NgoMIV GCCGGC 1 cut(s) 34
NheI GCTAGC 1 cut(s) 721
NlaIII CATG 5 cut(s) 334, 398, 984, 1009, 1211
NlaIV GGNNCC 4 cut(s) 84, 94, 508, 561
NmuCI GTSAC 2 cut(s) 426, 713
PaeR7I CTCGAG 1 cut(s) 1028
PaqCI CACCTGC 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 846
PdiI GCCGGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 904
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 6 cut(s) 349, 520, 630, 633, 838, 948
PleI GAGTC 2 cut(s) 746, 1072
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
PpsI GAGTC 2 cut(s) 746, 1072
Ppu21I YACGTR 1 cut(s) 683
PshAI GACNNNNGTC 1 cut(s) 50
PsiI TTATAA 3 cut(s) 737, 888, 1134
Psp6I CCWGG 2 cut(s) 562, 1251
PspCI CACGTG 1 cut(s) 683
PspGI CCWGG 2 cut(s) 562, 1251
PspN4I GGNNCC 4 cut(s) 84, 94, 508, 561
PspPI GGNCC 1 cut(s) 1264
PstI CTGCAG 2 cut(s) 633, 865
PstNI CAGNNNCTG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 967
PvuII CAGCTG 2 cut(s) 307, 628
RsaI GTAC 4 cut(s) 218, 448, 460, 1205
RsaNI GTAC 4 cut(s) 217, 447, 459, 1204
RseI CAYNNNNRTG 3 cut(s) 960, 985, 1290
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 2 cut(s) 806, 921
SatI GCNGC 6 cut(s) 348, 519, 629, 632, 837, 947
Sau3AI GATC 7 cut(s) 58, 333, 372, 850, 967, 1174, 1282
Sau96I GGNCC 1 cut(s) 1264
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 746, 1073
ScrFI CCNGG 3 cut(s) 564, 650, 1253
SexAI ACCWGGT 1 cut(s) 1251
SfaNI GCATC 3 cut(s) 334, 718, 958
SfcI CTRYAG 3 cut(s) 629, 861, 1110
Sfr274I CTCGAG 1 cut(s) 1028
SinI GGWCC 1 cut(s) 1264
SlaI CTCGAG 1 cut(s) 1028
SmiMI CAYNNNNRTG 3 cut(s) 960, 985, 1290
SmlI CTYRAG 2 cut(s) 469, 1028
SmoI CTYRAG 2 cut(s) 469, 1028
Sse9I AATT 9 cut(s) 281, 405, 583, 597, 810, 872, 1016, 1191, 1223
SsiI CCGC 4 cut(s) 111, 227, 510, 1142
SspI AATATT 1 cut(s) 884
SspMI CTAG 3 cut(s) 450, 513, 722
StyD4I CCNGG 3 cut(s) 562, 648, 1251
StyI CCWWGG 2 cut(s) 150, 244
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 3 cut(s) 685, 894, 1276
TaqI TCGA 6 cut(s) 233, 256, 482, 1029, 1156, 1185
TasI AATT 9 cut(s) 281, 405, 583, 597, 810, 872, 1016, 1191, 1223
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 1 cut(s) 904
Tru1I TTAA 2 cut(s) 806, 921
Tru9I TTAA 2 cut(s) 806, 921
TscAI CASTG 6 cut(s) 80, 189, 424, 460, 754, 918
TseFI GTSAC 2 cut(s) 426, 713
TseI GCWGC 6 cut(s) 347, 518, 628, 631, 836, 946
Tsp45I GTSAC 2 cut(s) 426, 713
TspDTI ATGAA 3 cut(s) 846, 978, 1070
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 6 cut(s) 80, 189, 424, 460, 754, 918
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 1264
XapI RAATTY 1 cut(s) 872
XhoI CTCGAG 1 cut(s) 1028
XspI CTAG 3 cut(s) 450, 513, 722
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.