Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Forward (+)

59326576 .. 59330383

Gene Structure 3808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTGAAGAGACTGCAATTACAAGAACAATGCCAGCTACAGGATTTGAGCCAAGTCATTGATCATCTAGGGCGCCACTGCTTCGCTCCCGATGATTCTCTCGTCTCCAAATCCGCATACTACGACCTCCAACTCGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTATCGAATTACCGTGCCATTGATTGTTGGATTTTGCAGGCTAGGGAGGAAATGTGCAGGGAAAGACTGCGTTACTTGGAAGCCATGGCAATTTATAGTGAGGCAATTGCAATGGTGGAAGATTATCACCAAGGCTGGGGGAACCCTCCTCAGCTGTTTGAGACGTTGGAGCATCTTATGATCACTGCGGAAGCCGCTCAAAGGTTGAGGCTTCCTCTGCTCTCTAAAGACGGTGATATTCATGAGGAAGAAATTGAAAGATGCAGCATAGTGTCACAAAGTTCCCTCGATAGTACTTGTACCAGTTTCACAGTCGGGTCAAGTTCTAACTCTCCAAATTATAGTGGTGCAAATAGCACAGTTAGTGCAGCAAACAACAATCTTTGTCTCAGTGCTACTTCAGTCGAGGAACCTGGACTTGGAGGCGTTCCCAATCGCTTTCTTGGAATTACACCTGCATATTTATGGAAAACACAGCTTCAACAAATCCCTCTCGACATGTATATCAGGGTAAAGTCAATAACTGAGGAGCTGGAAAGGGAGGAAGCAGCTCTGAAGGAAGATCTGTATTCAACAGAAAGAAGATTTACTGAATACTACAATGTTACTCGCCTTCATGAGTATCAGAGTGTTGATGCTCACTTCAATAAAATTGCAGGGCAGTACCGTGATATTGTAAAGGTAATAGGAATGCTTACAGTTGTCCATTGGTTTCCTAATGCTAAACTAATCAACATTCCTCCACAGAAGTTGGAAAATATGCAATGGACGATCCAGCAAGTAGAAATGGACCTGAAACGCGTCCCAGAACTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

349

Amino Acids

39.58

Weight (kDa)

5.06

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	428
AccII	CGCG	1 cut(s)	1032
AciI	CCGC	3 cut(s)	114, 419, 426
AclWI	GGATC	1 cut(s)	997
AcuI	CTGAAG	2 cut(s)	615, 806
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	4 cut(s)	138, 526, 532, 896
AfiI	CCNNNNNNNGG	4 cut(s)	40, 367, 432, 650
AflIII	ACRYGT	2 cut(s)	729, 1030
AgsI	TTSAA	5 cut(s)	7, 488, 713, 804, 877
AjnI	CCWGG	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	5 cut(s)	37, 385, 709, 763, 782
AluI	AGCT	5 cut(s)	37, 385, 709, 763, 782
Alw26I	GTCTC	4 cut(s)	4, 109, 386, 623
AlwI	GGATC	1 cut(s)	997
ApeKI	GCWGC	3 cut(s)	495, 599, 779
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	1021
AsuHPI	GGTGA	2 cut(s)	350, 476
AvaII	GGWCC	1 cut(s)	1021
BanI	GGYRCC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	507, 611, 791
BciT130I	CCWGG	1 cut(s)	645
BclI	TGATCA	2 cut(s)	61, 411
BcoDI	GTCTC	4 cut(s)	4, 109, 386, 623
BfaI	CTAG	2 cut(s)	68, 273
BfmI	CTRYAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	694
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	4 cut(s)	426, 496, 600, 780
BlsI	GCNGC	4 cut(s)	427, 497, 601, 781
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	1021
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	3 cut(s)	74, 374, 642
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	412, 482, 856
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
Bpu10I	CCTNAGC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	315, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 367, 432, 650
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	2 cut(s)	348, 1001
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	315, 361
BseLI	CCNNNNNNNGG	4 cut(s)	40, 367, 432, 650
BseMI	GCAATG	2 cut(s)	348, 1001
BseMII	CTCAG	3 cut(s)	395, 634, 747
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	369, 773
BseXI	GCAGC	3 cut(s)	507, 611, 791
BseYI	CCCAGC	1 cut(s)	366
BsgI	GTGCAG	2 cut(s)	307, 618
Bsh1236I	CGCG	1 cut(s)	1032
BshNI	GGYRCC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	1019
BslI	CCNNNNNNNGG	4 cut(s)	40, 367, 432, 650
BsmAI	GTCTC	4 cut(s)	4, 109, 386, 623
BsmBI	CGTCTC	2 cut(s)	109, 386
BsmFI	GGGAC	1 cut(s)	1019
BsmI	GAATGC	1 cut(s)	927
Bsp143I	GATC	4 cut(s)	61, 411, 793, 1002
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	3 cut(s)	114, 419, 426
BspCNI	CTCAG	3 cut(s)	394, 633, 748
BspFNI	CGCG	1 cut(s)	1032
BspHI	TCATGA	2 cut(s)	472, 847
BspLI	GGNNCC	3 cut(s)	74, 374, 642
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	997
BspT107I	GGYRCC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	348, 1001
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	2 cut(s)	315, 361
BssMI	GATC	4 cut(s)	61, 411, 793, 1002
BssNI	GRCGYC	1 cut(s)	73
BssT1I	CCWWGG	2 cut(s)	315, 361
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	6 cut(s)	245, 464, 544, 592, 899, 931
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	35, 270
BstDEI	CTNAG	3 cut(s)	381, 620, 756
BstDSI	CCRYGG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	1032
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	64, 414, 796, 1005
BstMAI	GTCTC	4 cut(s)	4, 109, 386, 623
BstMBI	GATC	4 cut(s)	61, 411, 793, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 448
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	643
BstSFI	CTRYAG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	1032
BstV1I	GCAGC	3 cut(s)	507, 611, 791
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BtgI	CCRYGG	1 cut(s)	315
BtsI	GCAGTG	2 cut(s)	76, 414
BtsIMutI	CAGTG	3 cut(s)	76, 414, 628
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	35, 270
CciI	TCATGA	2 cut(s)	472, 847
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	1021
CseI	GACGC	1 cut(s)	1021
Csp6I	GTAC	4 cut(s)	137, 525, 531, 895
CspCI	CAANNNNNGTGG	2 cut(s)	963, 998
CviAII	CATG	4 cut(s)	316, 473, 730, 848
CviQI	GTAC	4 cut(s)	137, 525, 531, 895
DdeI	CTNAG	3 cut(s)	381, 620, 756
DinI	GGCGCC	1 cut(s)	74
DpnI	GATC	4 cut(s)	63, 413, 795, 1004
DpnII	GATC	4 cut(s)	61, 411, 793, 1002
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	2 cut(s)	315, 361
Eco47I	GGWCC	1 cut(s)	1021
Eco57I	CTGAAG	2 cut(s)	615, 806
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	2 cut(s)	315, 361
EgeI	GGCGCC	1 cut(s)	74
EheI	GGCGCC	1 cut(s)	74
ErhI	CCWWGG	2 cut(s)	315, 361
Esp3I	CGTCTC	2 cut(s)	109, 386
FaeI	CATG	4 cut(s)	319, 476, 733, 851
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	4 cut(s)	315, 472, 729, 847
FbaI	TGATCA	2 cut(s)	61, 411
Fnu4HI	GCNGC	4 cut(s)	426, 496, 600, 780
Fsp4HI	GCNGC	4 cut(s)	426, 496, 600, 780
FspBI	CTAG	2 cut(s)	68, 273
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	426, 496, 600, 780
GsaI	CCCAGC	1 cut(s)	370
HaeII	RGCGCY	1 cut(s)	76
HgaI	GACGC	1 cut(s)	1021
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	319, 476, 733, 851
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	95
HphI	GGTGA	2 cut(s)	350, 476
Hpy188I	TCNGA	2 cut(s)	786, 858
Hpy188III	TCNNGA	4 cut(s)	89, 473, 725, 848
HpyAV	CCTTC	2 cut(s)	781, 854
HpyCH4III	ACNGT	6 cut(s)	245, 464, 544, 592, 899, 931
HpyCH4IV	ACGT	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 448
HpyF3I	CTNAG	3 cut(s)	381, 620, 756
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	319, 476, 733, 851
HspAI	GCGC	1 cut(s)	73
KasI	GGCGCC	1 cut(s)	72
Ksp22I	TGATCA	2 cut(s)	61, 411
Kzo9I	GATC	4 cut(s)	61, 411, 793, 1002
LmnI	GCTCC	3 cut(s)	91, 400, 760
Lsp1109I	GCAGC	3 cut(s)	507, 611, 791
LweI	GCATC	3 cut(s)	412, 482, 856
MaeI	CTAG	2 cut(s)	68, 273
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	3 cut(s)	302, 504, 835
MalI	GATC	4 cut(s)	63, 413, 795, 1004
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	4 cut(s)	61, 411, 793, 1002
MboII	GAAGA	5 cut(s)	19, 362, 491, 803, 825
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	793
MluCI	AATT	8 cut(s)	17, 238, 321, 336, 483, 568, 678, 882
MluI	ACGCGT	1 cut(s)	1030
Mly113I	GGCGCC	1 cut(s)	73
MmeI	TCCRAC	4 cut(s)	154, 239, 378, 963
MslI	CAYNNNNRTG	1 cut(s)	694
MspA1I	CMGCKG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	927
MvaI	CCWGG	1 cut(s)	645
MvnI	CGCG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	2 cut(s)	425, 448
NarI	GGCGCC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	4 cut(s)	61, 411, 793, 1002
NlaIII	CATG	4 cut(s)	319, 476, 733, 851
NlaIV	GGNNCC	3 cut(s)	74, 374, 642
NmuCI	GTSAC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	733
PagI	TCATGA	2 cut(s)	472, 847
PaqCI	CACCTGC	1 cut(s)	694
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	927
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	427, 497, 601, 781
PluTI	GGCGCC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	3 cut(s)	74, 374, 642
PspPI	GGNCC	1 cut(s)	1021
PsuI	RGATCY	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	4 cut(s)	138, 526, 532, 896
RsaNI	GTAC	4 cut(s)	137, 525, 531, 895
RseI	CAYNNNNRTG	1 cut(s)	694
SatI	GCNGC	4 cut(s)	426, 496, 600, 780
Sau3AI	GATC	4 cut(s)	61, 411, 793, 1002
Sau96I	GGNCC	1 cut(s)	1021
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	645
SfaNI	GCATC	3 cut(s)	412, 482, 856
SfcI	CTRYAG	1 cut(s)	38
SfoI	GGCGCC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	1 cut(s)	694
Sse9I	AATT	8 cut(s)	17, 238, 321, 336, 483, 568, 678, 882
SsiI	CCGC	3 cut(s)	114, 419, 426
SspDI	GGCGCC	1 cut(s)	72
SspMI	CTAG	2 cut(s)	68, 273
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	315, 361
TaaI	ACNGT	6 cut(s)	245, 464, 544, 592, 899, 931
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	4 cut(s)	236, 519, 636, 726
TasI	AATT	8 cut(s)	17, 238, 321, 336, 483, 568, 678, 882
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	3 cut(s)	83, 421, 628
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	3 cut(s)	495, 599, 779
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	2 cut(s)	461, 836
TspRI	CASTG	3 cut(s)	83, 421, 628
VpaK11BI	GGWCC	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	733
XspI	CTAG	2 cut(s)	68, 273
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.