Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0002315

Physical Location & Seq

Genomic Coordinates Reverse (-)

83320 .. 86069

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgttggagcatcttatgatcactgcagaagccgctcaaaggttgaggcttcctctgctctctaaagacggtgatattcatgaggaagaaattgaaagatgcagcatagtgtcacaaagttccctcgatagtacttgtaccagtttcacagtcgggtcaagttctaactctccaaattatagtggtgcaaatagcacagttagtgcagcaaacaacaatctttgtctcagtgctacttcagtagaggaacctggacttggagtcgttcccaatcgctttcttggaattacacctgcatatttatggaaaacacagcttcaacaaatccctttcgacatggatctggcagaataccggctgtgtctttccgatgagattgaggctcgtttacaagctaaatgtgataagttagcccacccctttgtaatggaagacatagactggttgtcatccggacaggaaaatacaagtgatcagttaccagaaaggtttaagttcctctataatgcaattttagttactcgccttcatgagtatcagagtgttgatgctcacttcaataaaattgcagggcagtaccgtgatattttaaaggtaataggaatgcttacagttgtccgttggtttcctaatgctaaactaatcaacattcctccacagaagttggaaaatatgcaatggacgatccagcaagtagaaatggacctgaaacgcgtcccagaactaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

243

Amino Acids

27.46

Weight (kDa)

4.98

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50710
fragaria_vesca	FvH4_3g22760 FvH4_3g22760 FvH4_3g22760 FvH4_6g31880 FvH4_6g31880
malus_domestica	MD03G1200100.v1.1 MD17G1190200.v1.1
prunus_persica	Prupe.3G065100_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1 Prupe.4G214200_v2.0.a1
pyrus_communis	pycom17g19770
rosa_chinensis	RchiOBHm_Chr2g0139231 RchiOBHm_Chr5g0039771
rosa_laevigata	RLG00000019565 RLG00000019711 RLG00000019797 RLG00000033942
rosa_multiflora	Rmu_sc0000103.1_g000018 Rmu_sc0001803.1_g000002 Rmu_sc0042828.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041440 Rroxscaffold_2G00105540
rosa_rugosa	Rorug02G0355600 Rorug02G0355700 Rorug05G0182400 Rorug05G0182400 Rorug05G0182800
rosa_samantha	Rh2AG405800 Rh2BG404900 Rh2BG411100 Rh2BG416400 Rh2CG392000 Rh5AG268500 Rh5BG272800 Rh5CG305400 Rh5DG280700
rosa_wichuraiana	Rw2G032880 Rw2G033150 Rw5G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	1 cut(s)	714
AccIII	TCCGGA	1 cut(s)	452
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	348, 679
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	133, 139, 578
AfiI	CCNNNNNNNGG	2 cut(s)	39, 257
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	3 cut(s)	95, 320, 559
AhdI	GACNNNNNGTC	2 cut(s)	260, 445
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	316, 395
AluI	AGCT	2 cut(s)	316, 395
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	348, 679
Aor13HI	TCCGGA	1 cut(s)	452
ApeKI	GCWGC	2 cut(s)	102, 206
AspS9I	GGNCC	1 cut(s)	703
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	114, 218
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	2 cut(s)	18, 472
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	33, 103, 207
BlsI	GCNGC	3 cut(s)	34, 104, 208
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	703
BmeRI	GACNNNNNGTC	2 cut(s)	260, 445
BmgT120I	GGNCC	1 cut(s)	703
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	19, 89, 538
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 257
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	141, 446
Bse3DI	GCAATG	1 cut(s)	683
BseAI	TCCGGA	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	39, 257
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	141, 446
BseXI	GCAGC	2 cut(s)	114, 218
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	355, 453
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	2 cut(s)	39, 257
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	609
Bsp13I	TCCGGA	1 cut(s)	452
Bsp143I	GATC	4 cut(s)	18, 340, 472, 684
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	714
BspHI	TCATGA	2 cut(s)	79, 529
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	348, 679
BsrBI	CCGCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	141, 446
BssAI	RCCGGY	1 cut(s)	354
BssMI	GATC	4 cut(s)	18, 340, 472, 684
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	5 cut(s)	71, 151, 199, 581, 613
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	1 cut(s)	714
BstKTI	GATC	4 cut(s)	21, 343, 475, 687
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	4 cut(s)	18, 340, 472, 684
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 55
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	114, 218
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 235
BveI	ACCTGC	1 cut(s)	301
CciI	TCATGA	2 cut(s)	79, 529
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	703
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	132, 138, 577
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	3 cut(s)	80, 337, 530
CviJI	RGCY	7 cut(s)	32, 49, 316, 358, 383, 395, 413
CviKI_1	RGCY	7 cut(s)	32, 49, 316, 358, 383, 395, 413
CviQI	GTAC	3 cut(s)	132, 138, 577
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	4 cut(s)	20, 342, 474, 686
DpnII	GATC	4 cut(s)	18, 340, 472, 684
DraI	TTTAAA	1 cut(s)	591
DriI	GACNNNNNGTC	2 cut(s)	260, 445
Eam1105I	GACNNNNNGTC	2 cut(s)	260, 445
Eco47I	GGWCC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	83, 340, 533
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	79, 336, 529
FbaI	TGATCA	2 cut(s)	18, 472
Fnu4HI	GCNGC	3 cut(s)	33, 103, 207
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	33, 103, 207
GluI	GCNGC	3 cut(s)	33, 103, 207
HapII	CCGG	2 cut(s)	355, 453
HgaI	GACGC	1 cut(s)	703
Hin1II	CATG	3 cut(s)	83, 340, 533
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	2 cut(s)	355, 453
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	370, 540
Hpy188III	TCNNGA	3 cut(s)	80, 453, 530
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	5 cut(s)	71, 151, 199, 581, 613
HpyCH4V	TGCA	8 cut(s)	26, 102, 188, 206, 296, 509, 569, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 55
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	83, 340, 533
Kpn2I	TCCGGA	1 cut(s)	452
Ksp22I	TGATCA	2 cut(s)	18, 472
Kzo9I	GATC	4 cut(s)	18, 340, 472, 684
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	2 cut(s)	114, 218
LweI	GCATC	3 cut(s)	19, 89, 538
MaeIII	GTNAC	3 cut(s)	111, 477, 517
MalI	GATC	4 cut(s)	20, 342, 474, 686
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	4 cut(s)	18, 340, 472, 684
MboII	GAAGA	2 cut(s)	98, 443
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	5 cut(s)	90, 175, 285, 510, 564
MluI	ACGCGT	1 cut(s)	712
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	8 cut(s)	39, 63, 76, 134, 238, 373, 509, 663
MroI	TCCGGA	1 cut(s)	452
MseI	TTAA	2 cut(s)	492, 590
MslI	CAYNNNNRTG	1 cut(s)	301
MspI	CCGG	2 cut(s)	355, 453
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	32, 55
NdeII	GATC	4 cut(s)	18, 340, 472, 684
NlaIII	CATG	3 cut(s)	83, 340, 533
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	111
PagI	TCATGA	2 cut(s)	79, 529
PaqCI	CACCTGC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	609
PkrI	GCNGC	3 cut(s)	34, 104, 208
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	3 cut(s)	133, 139, 578
RsaNI	GTAC	3 cut(s)	132, 138, 577
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	492, 590
SatI	GCNGC	3 cut(s)	33, 103, 207
Sau3AI	GATC	4 cut(s)	18, 340, 472, 684
Sau96I	GGNCC	1 cut(s)	703
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	8 cut(s)	44, 253, 295, 318, 397, 491, 597, 708
SfaNI	GCATC	3 cut(s)	19, 89, 538
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	703
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	5 cut(s)	90, 175, 285, 510, 564
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	5 cut(s)	71, 151, 199, 581, 613
TaqI	TCGA	2 cut(s)	126, 333
TasI	AATT	5 cut(s)	90, 175, 285, 510, 564
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	492, 590
Tru9I	TTAA	2 cut(s)	492, 590
TscAI	CASTG	2 cut(s)	28, 235
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	102, 206
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	68, 518
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	2 cut(s)	28, 235
VpaK11BI	GGWCC	1 cut(s)	703
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.