Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Reverse (-)

18671049 .. 18675525

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGCCGGGAACAGGTAATAATTCCTCCTCTCGTAGCCAACCCAGTTTTCTTGCGCAATCCTCGCCTGAAATTCAACGTAGCAAAACTGAGCGCTAGTAGCCTTCGTGCGTCTGTTTCTTTTTCTTCTTCTACTCCTAAATTCAATGTTGACGTGAAACTCAAAAGCTTCTACTCCACAGCAATGAACAACCGGTACTGGTCAACCATCACCACCGACTCAGGGAGGCATGCTTCTATGTGTCTAACACCTAATGTTATTAAACAACTTGGACGTGTCGGCGGTAAGTGGTCGACGGTGTACCTGTACGACCCTAGGTCAGCAAACACTAGCGACTCGCCTTTGGCCAATGTTTTGGGTGATCTCGCCGGAAAACTGGAAAAGAACGGACTCGCTGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTTCGCTGGGGAGAGAAGCCCTTCTAGATCTATAGAGAACCTCCTTAAACTCTTAAATAGGAAAGTTCTTAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.43

Weight (kDa)

10.15

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	71, 140
AfaI	GTAC	3 cut(s)	197, 302, 308
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	13, 222
AflIII	ACRYGT	1 cut(s)	274
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	76, 145
AhdI	GACNNNNNGTC	1 cut(s)	316
AjiI	CACGTC	2 cut(s)	154, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AluBI	AGCT	2 cut(s)	168, 421
AluI	AGCT	2 cut(s)	168, 421
Aor51HI	AGCGCT	1 cut(s)	94
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	2 cut(s)	71, 140
AsiGI	ACCGGT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	448
AspA2I	CCTAGG	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	57, 95
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	202, 371
AvrII	CCTAGG	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	2 cut(s)	215, 395
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	4 cut(s)	96, 315, 330, 453
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	96
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	1 cut(s)	422
BlnI	CCTAGG	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmgBI	CACGTC	2 cut(s)	154, 275
BmrFI	CCNGG	1 cut(s)	8
BmrI	ACTGGG	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 222
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	3 cut(s)	44, 203, 381
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	13, 222
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	80, 234
BseNI	ACTGG	3 cut(s)	44, 203, 381
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	408
BseYI	CCCAGC	2 cut(s)	395, 434
BshFI	GGCC	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	7, 193, 369
BslI	CCNNNNNNNGG	2 cut(s)	13, 222
BsnI	GGCC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	361, 455
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	81, 233
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	44, 203, 381
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	361, 455
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	89, 220, 497
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	57, 95
BstKTI	GATC	2 cut(s)	364, 458
BstMBI	GATC	2 cut(s)	361, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 99
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	347
BtrI	CACGTC	2 cut(s)	154, 275
BtsCI	GGATG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	2 cut(s)	57, 95
Cfr10I	RCCGGY	1 cut(s)	192
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	196, 301, 307
CspAI	ACCGGT	1 cut(s)	192
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	7 cut(s)	38, 102, 168, 347, 421, 447, 501
CviKI_1	RGCY	7 cut(s)	38, 102, 168, 347, 421, 447, 501
CviQI	GTAC	3 cut(s)	196, 301, 307
DdeI	CTNAG	3 cut(s)	89, 220, 497
DpnI	GATC	2 cut(s)	363, 457
DpnII	GATC	2 cut(s)	361, 455
DriI	GACNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	314
Eco47III	AGCGCT	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	233
FaiI	YATR	4 cut(s)	231, 239, 461, 505
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	4 cut(s)	96, 315, 330, 453
FspI	TGCGCA	1 cut(s)	56
GlaI	GCGC	2 cut(s)	56, 94
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	2 cut(s)	399, 438
GsuI	CTGGAG	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	3 cut(s)	7, 193, 369
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	2 cut(s)	57, 95
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	2 cut(s)	55, 93
HinP1I	GCGC	2 cut(s)	55, 93
HincII	GTYRAC	3 cut(s)	151, 204, 294
HindII	GTYRAC	3 cut(s)	151, 204, 294
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	3 cut(s)	218, 335, 390
HpaII	CCGG	3 cut(s)	7, 193, 369
HphI	GGTGA	2 cut(s)	202, 371
Hpy166II	GTNNAC	4 cut(s)	151, 204, 294, 301
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	4 cut(s)	151, 204, 294, 301
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	113, 459
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	3 cut(s)	78, 153, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 99
HpyF3I	CTNAG	3 cut(s)	89, 220, 497
HpySE526I	ACGT	3 cut(s)	78, 153, 274
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	2 cut(s)	55, 93
Kzo9I	GATC	2 cut(s)	361, 455
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	4 cut(s)	96, 315, 330, 453
MaeII	ACGT	3 cut(s)	78, 153, 274
MalI	GATC	2 cut(s)	363, 457
MboI	GATC	2 cut(s)	361, 455
MboII	GAAGA	2 cut(s)	117, 120
MflI	RGATCY	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	3 cut(s)	21, 71, 140
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	3 cut(s)	212, 329, 384
MnlI	CCTC	5 cut(s)	36, 39, 72, 219, 479
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	3 cut(s)	261, 474, 482
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	3 cut(s)	7, 193, 369
MspR9I	CCNGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	63, 99
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	2 cut(s)	361, 455
NlaIII	CATG	1 cut(s)	233
NsbI	TGCGCA	1 cut(s)	56
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	448
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	3 cut(s)	212, 329, 384
PpsI	GAGTC	3 cut(s)	212, 329, 384
PspFI	CCCAGC	2 cut(s)	395, 434
PsrI	GAACNNNNNNTAC	2 cut(s)	179, 211
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	197, 302, 308
RsaNI	GTAC	3 cut(s)	196, 301, 307
RseI	CAYNNNNRTG	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	261, 474, 482
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	361, 455
SchI	GAGTC	3 cut(s)	212, 329, 384
ScrFI	CCNGG	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	3 cut(s)	21, 71, 140
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	4 cut(s)	96, 315, 330, 453
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	3 cut(s)	81, 156, 277
TaqI	TCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	21, 71, 140
Tru1I	TTAA	3 cut(s)	261, 474, 482
Tru9I	TTAA	3 cut(s)	261, 474, 482
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	402
XapI	RAATTY	2 cut(s)	71, 140
XbaI	TCTAGA	1 cut(s)	452
XceI	RCATGY	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	4 cut(s)	96, 315, 330, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.