Rmu_sc0007362.1_g000024

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007362.1
OG0008854
Physical Location & Seq
Forward (+)
35777 .. 36076
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007362.1_g000024.1.cds

Sequence Viewer

Length: 300 bp
atgtggctgaagtcccattcttcatccgcgctcgaactgtttaatcttctaaccatcaacgtagacatcaaaaccgagactgcatgggtccaggccggtgctactataggcgaagtttcctacagaatttacgagaaaaccaaagtccatggatttcccgccagtgtaggcccaacagtcggggttggaggacacttcagtggcggtggatatggcaacatgatgagaaagtacggcttgtcaattgacaacataatagatgcacaaatagttgatgtgcatggaagacttcttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

99

Amino Acids

10.71

Weight (kDa)

6.39

Isoelectric Point (pI)

7.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 27, 159, 204
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 2 cut(s) 29, 181
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 179
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 2 cut(s) 93, 169
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 88, 170
AvaII GGWCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 292
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 105, 121
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 88, 170
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 95, 171
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 95, 171
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 3 cut(s) 27, 159, 204
BspANI GGCC 2 cut(s) 95, 171
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 39, 178
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 105, 121
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 95, 171
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 169, 205
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 88, 170
Csp6I GTAC 1 cut(s) 232
CviAII CATG 4 cut(s) 84, 149, 220, 281
CviJI RGCY 4 cut(s) 7, 95, 171, 237
CviKI_1 RGCY 4 cut(s) 7, 95, 171, 237
CviQI GTAC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 29, 181
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 87, 152, 223, 284
FaiI YATR 7 cut(s) 85, 107, 150, 213, 221, 254, 282
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 4 cut(s) 83, 148, 219, 280
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 10
GlaI GCGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 95, 171
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 31
Hin1II CATG 4 cut(s) 87, 152, 223, 284
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 39, 178
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 83, 263, 280
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 4 cut(s) 87, 152, 223, 284
HspAI GCGC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 77, 104, 109, 175
LweI GCATC 1 cut(s) 250
MaeII ACGT 1 cut(s) 60
MboII GAAGA 3 cut(s) 12, 38, 297
MfeI CAATTG 1 cut(s) 243
MluCI AATT 2 cut(s) 126, 243
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 1 cut(s) 182
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 29
NcoI CCATGG 1 cut(s) 148
NlaIII CATG 4 cut(s) 87, 152, 223, 284
NlaIV GGNNCC 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 2 cut(s) 88, 170
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 42
Sau96I GGNCC 2 cut(s) 88, 170
ScrFI CCNGG 1 cut(s) 92
SetI ASST 1 cut(s) 63
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 2 cut(s) 105, 121
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 126, 243
SsiI CCGC 3 cut(s) 27, 159, 204
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 39, 178
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 126, 243
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 169, 205
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 2 cut(s) 169, 205
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.