Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Reverse (-)

43442862 .. 43444588

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTAGCTAGTGCTCTGCTTGAAGACCTTAGGCCGTCTCCTGCTCCGGCGCTCGACCCAGGCAGTCTCCGGCTCCGGCGCTCCACCCAGGCAGTCTACCTCTCTCCTCCAGACTCGGGCCGCCCACCACGGCGTCGTCACCAGAGGAATCGATCTCGACGACTCGGTCCAGATCGGAGTCGACCTCGACAACTGGCTGGTCTTAATCCAGATCGGAAGAATGCTGAACCTGAAGGAAGTGAATCGGAGATTGGGGATGTTGACCAGGCTCCTTCGCCTCCTCCAGCCACCACTTCTCCACGGATCACAGCGCCGAATTCGAAGTCGACGACTTCTCCACCAACGATGACGGCGGTTCCACTCCCAAGTCCTCCTCCGCCGCGGCGATTCATCGAACACCTCGAGCTACAGGTCCACCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

11.41

Isoelectric Point (pI)

107.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	165
AccI	GTMKAC	3 cut(s)	96, 181, 326
AccII	CGCG	1 cut(s)	382
AciI	CCGC	5 cut(s)	121, 353, 377, 380, 382
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	3 cut(s)	58, 87, 264
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	2 cut(s)	8, 406
AluI	AGCT	2 cut(s)	8, 406
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	42, 71
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	115, 401
AoxI	GGCC	2 cut(s)	32, 118
ApoI	RAATTY	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsiGI	ACCGGT	1 cut(s)	417
AspLEI	GCGC	3 cut(s)	52, 81, 313
AspS9I	GGNCC	3 cut(s)	118, 167, 412
AsuHPI	GGTGA	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	2 cut(s)	115, 401
AvaII	GGWCC	2 cut(s)	167, 412
AxyI	CCTNAGG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	16
BceAI	ACGGC	3 cut(s)	19, 146, 366
BciT130I	CCWGG	3 cut(s)	60, 89, 266
BcoDI	GTCTC	2 cut(s)	42, 71
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	3 cut(s)	53, 82, 314
BisI	GCNGC	3 cut(s)	121, 380, 383
BlsI	GCNGC	3 cut(s)	122, 381, 384
Bme1390I	CCNGG	3 cut(s)	60, 89, 266
Bme18I	GGWCC	2 cut(s)	167, 412
BmeT110I	CYCGRG	2 cut(s)	115, 401
BmgT120I	GGNCC	3 cut(s)	118, 167, 412
BmiI	GGNNCC	3 cut(s)	74, 270, 357
BmrFI	CCNGG	3 cut(s)	60, 89, 266
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BpmI	CTGGAG	2 cut(s)	93, 267
Bpu14I	TTCGAA	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	5 cut(s)	58, 87, 128, 299, 380
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 319, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	198
Bse21I	CCTNAGG	1 cut(s)	29
BseBI	CCWGG	3 cut(s)	60, 89, 266
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	5 cut(s)	58, 87, 128, 299, 380
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	3 cut(s)	96, 270, 363
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	34, 120
BshTI	ACCGGT	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	115, 401
BsiSI	CCGG	4 cut(s)	47, 70, 76, 418
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	42, 71
BsmBI	CGTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	34, 120
BsoBI	CYCGRG	2 cut(s)	115, 401
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	152, 172, 211, 303
BspACI	CCGC	5 cut(s)	121, 353, 377, 380, 382
BspANI	GGCC	2 cut(s)	34, 120
BspDI	ATCGAT	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	74, 270, 357
BspPI	GGATC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	5 cut(s)	58, 87, 128, 299, 380
BssMI	GATC	4 cut(s)	152, 172, 211, 303
BssNI	GRCGYC	1 cut(s)	133
Bst2UI	CCWGG	3 cut(s)	60, 89, 266
BstACI	GRCGYC	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	29
BstDSI	CCRYGG	3 cut(s)	128, 299, 380
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	3 cut(s)	53, 82, 314
BstHHI	GCGC	3 cut(s)	52, 81, 313
BstKTI	GATC	4 cut(s)	155, 175, 214, 306
BstMAI	GTCTC	2 cut(s)	42, 71
BstMBI	GATC	4 cut(s)	152, 172, 211, 303
BstNI	CCWGG	3 cut(s)	60, 89, 266
BstSCI	CCNGG	3 cut(s)	58, 87, 264
BstSFI	CTRYAG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	34, 120
BsuTUI	ATCGAT	1 cut(s)	151
BtgI	CCRYGG	3 cut(s)	128, 299, 380
BtsCI	GGATG	1 cut(s)	262
CfoI	GCGC	3 cut(s)	52, 81, 313
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	3 cut(s)	118, 167, 412
Cfr42I	CCGCGG	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	151
CseI	GACGC	1 cut(s)	122
CspAI	ACCGGT	1 cut(s)	417
CviJI	RGCY	8 cut(s)	8, 34, 73, 120, 197, 269, 287, 406
CviKI_1	RGCY	8 cut(s)	8, 34, 73, 120, 197, 269, 287, 406
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	4 cut(s)	154, 174, 213, 305
DpnII	GATC	4 cut(s)	152, 172, 211, 303
DrdI	GACNNNNNNGTC	1 cut(s)	165
DseDI	GACNNNNNNGTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	167, 412
Eco57I	CTGAAG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	29
Eco88I	CYCGRG	2 cut(s)	115, 401
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	58, 87, 264
Esp3I	CGTCTC	1 cut(s)	42
FblI	GTMKAC	3 cut(s)	96, 181, 326
Fnu4HI	GCNGC	3 cut(s)	121, 380, 383
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	121, 380, 383
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	3 cut(s)	51, 80, 312
GluI	GCNGC	3 cut(s)	121, 380, 383
GsuI	CTGGAG	2 cut(s)	93, 267
HaeII	RGCGCY	3 cut(s)	53, 82, 314
HaeIII	GGCC	2 cut(s)	34, 120
HapII	CCGG	4 cut(s)	47, 70, 76, 418
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	52, 81, 313
Hin1I	GRCGYC	1 cut(s)	133
Hin6I	GCGC	3 cut(s)	50, 79, 311
HinP1I	GCGC	3 cut(s)	50, 79, 311
HincII	GTYRAC	3 cut(s)	182, 262, 327
HindII	GTYRAC	3 cut(s)	182, 262, 327
HinfI	GANTC	6 cut(s)	113, 148, 162, 178, 242, 387
HpaII	CCGG	4 cut(s)	47, 70, 76, 418
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	5 cut(s)	97, 182, 262, 327, 415
Hpy188I	TCNGA	3 cut(s)	177, 216, 247
Hpy188III	TCNNGA	4 cut(s)	110, 156, 170, 209
Hpy8I	GTNNAC	5 cut(s)	97, 182, 262, 327, 415
Hpy99I	CGWCG	3 cut(s)	138, 162, 331
HpyAV	CCTTC	2 cut(s)	227, 282
HpyF3I	CTNAG	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	133
HspAI	GCGC	3 cut(s)	50, 79, 311
KspI	CCGCGG	1 cut(s)	383
Kzo9I	GATC	4 cut(s)	152, 172, 211, 303
LmnI	GCTCC	4 cut(s)	49, 78, 86, 274
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	154, 174, 213, 305
MboI	GATC	4 cut(s)	152, 172, 211, 303
MboII	GAAGA	2 cut(s)	35, 229
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	3 cut(s)	107, 156, 187
MnlI	CCTC	9 cut(s)	110, 117, 138, 195, 288, 291, 381, 384, 410
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	4 cut(s)	47, 70, 76, 418
MspR9I	CCNGG	3 cut(s)	60, 89, 266
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	3 cut(s)	60, 89, 266
MvnI	CGCG	1 cut(s)	382
NdeII	GATC	4 cut(s)	152, 172, 211, 303
NlaIV	GGNNCC	3 cut(s)	74, 270, 357
NmuCI	GTSAC	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	3 cut(s)	157, 326, 399
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	148, 242, 387
PflFI	GACNNNGTC	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	417
PkrI	GCNGC	3 cut(s)	122, 381, 384
PleI	GAGTC	3 cut(s)	107, 156, 186
PpsI	GAGTC	3 cut(s)	107, 156, 186
Psp6I	CCWGG	3 cut(s)	58, 87, 264
PspGI	CCWGG	3 cut(s)	58, 87, 264
PspN4I	GGNNCC	3 cut(s)	74, 270, 357
PspPI	GGNCC	3 cut(s)	118, 167, 412
PspXI	VCTCGAGB	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	383
SalI	GTCGAC	2 cut(s)	180, 325
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	121, 380, 383
Sau3AI	GATC	4 cut(s)	152, 172, 211, 303
Sau96I	GGNCC	3 cut(s)	118, 167, 412
SchI	GAGTC	3 cut(s)	107, 156, 187
ScrFI	CCNGG	3 cut(s)	60, 89, 266
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	8 cut(s)	10, 30, 102, 187, 232, 402, 408, 414
SfcI	CTRYAG	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	401
Sfr303I	CCGCGG	1 cut(s)	383
SfuI	TTCGAA	1 cut(s)	320
SgrBI	CCGCGG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	167, 412
SlaI	CTCGAG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	5 cut(s)	121, 353, 377, 380, 382
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	58, 87, 264
TaqI	TCGA	9 cut(s)	54, 151, 157, 181, 187, 320, 326, 393, 402
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	1 cut(s)	316
TauI	GCSGC	3 cut(s)	123, 382, 385
TfiI	GAWTC	3 cut(s)	148, 242, 387
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	379
TspGWI	ACGGA	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	167, 412
XapI	RAATTY	1 cut(s)	316
XhoI	CTCGAG	1 cut(s)	401
XmiI	GTMKAC	3 cut(s)	96, 181, 326
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.