Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Reverse (-)

13741888 .. 13743877

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTTCTCAATCGGAAACCCAAACACCACAAGCTCCTAGTTGTGGGAGAAGGTGAAGAAGACCCGGGCGGTAAATATGATCAAGAAGACAATGATGGACACGGGGTGGTAGATGAGGTTGAGGAAGAGCACGACGACCAAGAGGACCATGGTGTAGTTGGACCGGAAATGGGTCAAAGGAAATCAGAGATGGGTCTTTGGTTTCTATGTTACTACTATGAGAAGAAGAACAAGATGAAGAAGAAGAAGAAGATGAAGAAGAAGATGAAGAAGAAGAGCCGAGAGAGAGAGAGGAACGGAGGGGGAGGTCATCACGGAGAGGAGGCCGGTTCTGTGCTCGACGTAGCTGTCCCTAAATCGGTTCAGCGACTCGACCAAGTCCAAGTTGGACCGGAGTTGGGTTCGATAAACGAGGTGTTGATAAGGAACAAGGACAATGACAACGATCATGTTCATGAGGTTCGCGGGGCTCTTGCAAAAAGTCTCCTTTTAATCCAACCTTTGAGTGGGAGGTTTCACTTGGACGGCGACGAGAGCGCTTGGGTGGAGCCCAGTGATACCATCGGAGAAATTTTTACTAGAATTGAGGAGAAAAGTAACATCCATGGTTTTGCGGCTGCTGCTTGCCCTAGTGTTGGTGTTGGTGGTCACTTCGCAGGGAGTGGGTATGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

225

Amino Acids

24.93

Weight (kDa)

5.96

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccII	CGCG	1 cut(s)	465
AciI	CCGC	3 cut(s)	69, 465, 614
AcsI	RAATTY	1 cut(s)	570
AdeI	CACNNNGTG	1 cut(s)	106
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	6 cut(s)	43, 170, 358, 398, 506, 635
AluBI	AGCT	2 cut(s)	34, 347
AluI	AGCT	2 cut(s)	34, 347
Alw21I	GWGCWC	2 cut(s)	132, 339
Alw26I	GTCTC	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	64
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	617, 620
ApoI	RAATTY	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	3 cut(s)	145, 161, 389
AsuC2I	CCSGG	2 cut(s)	65, 66
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	145, 161, 389
BanII	GRGCYC	2 cut(s)	472, 552
BbsI	GAAGAC	2 cut(s)	66, 93
Bbv12I	GWGCWC	2 cut(s)	132, 339
BbvI	GCAGC	2 cut(s)	604, 607
BccI	CCATC	3 cut(s)	89, 184, 569
BceAI	ACGGC	1 cut(s)	541
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	65, 66
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	3 cut(s)	38, 579, 630
BfoI	RGCGCY	1 cut(s)	540
BisI	GCNGC	3 cut(s)	615, 618, 621
BlsI	GCNGC	3 cut(s)	616, 619, 622
Bme1390I	CCNGG	2 cut(s)	65, 66
Bme18I	GGWCC	3 cut(s)	145, 161, 389
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	145, 161, 389
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	65, 66
BmrI	ACTGGG	1 cut(s)	546
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	2 cut(s)	66, 93
BpuMI	CCSGG	2 cut(s)	65, 66
BsaJI	CCNNGG	3 cut(s)	64, 148, 604
BsaWI	WCCGGW	2 cut(s)	163, 391
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 170, 358, 398, 506, 635
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	64, 148, 604
BseGI	GGATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	6 cut(s)	43, 170, 358, 398, 506, 635
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	2 cut(s)	335, 602
BseXI	GCAGC	2 cut(s)	604, 607
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	132, 339
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	4 cut(s)	65, 164, 327, 392
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	6 cut(s)	43, 170, 358, 398, 506, 635
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	4 cut(s)	132, 339, 472, 552
Bsp143I	GATC	2 cut(s)	79, 445
Bsp19I	CCATGG	2 cut(s)	148, 604
BspACI	CCGC	3 cut(s)	69, 465, 614
BspANI	GGCC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	549
BspQI	GCTCTTC	2 cut(s)	120, 269
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	64, 148, 604
BssMI	GATC	2 cut(s)	79, 445
BssT1I	CCWWGG	2 cut(s)	148, 604
Bst6I	CTCTTC	2 cut(s)	120, 269
BstC8I	GCNNGC	1 cut(s)	625
BstDSI	CCRYGG	2 cut(s)	148, 604
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	2 cut(s)	82, 448
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	2 cut(s)	79, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 620
BstSCI	CCNGG	2 cut(s)	63, 64
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	604, 607
BstV2I	GAAGAC	2 cut(s)	66, 93
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	2 cut(s)	148, 604
BtsCI	GGATG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	625
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	145, 161, 389
Cfr9I	CCCGGG	1 cut(s)	64
CviAII	CATG	4 cut(s)	149, 449, 455, 605
CviJI	RGCY	7 cut(s)	34, 279, 326, 347, 470, 550, 617
CviKI_1	RGCY	7 cut(s)	34, 279, 326, 347, 470, 550, 617
DpnI	GATC	2 cut(s)	81, 447
DpnII	GATC	2 cut(s)	79, 445
DraIII	CACNNNGTG	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	120, 269
EarI	CTCTTC	2 cut(s)	120, 269
Eco130I	CCWWGG	2 cut(s)	148, 604
Eco24I	GRGCYC	2 cut(s)	472, 552
Eco47I	GGWCC	3 cut(s)	145, 161, 389
Eco47III	AGCGCT	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	148, 604
EcoT38I	GRGCYC	2 cut(s)	472, 552
ErhI	CCWWGG	2 cut(s)	148, 604
FaeI	CATG	4 cut(s)	152, 452, 458, 608
FaiI	YATR	8 cut(s)	78, 150, 208, 219, 450, 456, 606, 669
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	148, 448, 454, 604
FauI	CCCGC	1 cut(s)	458
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	615, 618, 621
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	2 cut(s)	472, 552
Fsp4HI	GCNGC	3 cut(s)	615, 618, 621
FspBI	CTAG	3 cut(s)	38, 579, 630
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	3 cut(s)	615, 618, 621
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	4 cut(s)	65, 164, 327, 392
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	4 cut(s)	152, 452, 458, 608
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	4 cut(s)	65, 164, 327, 392
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	3 cut(s)	15, 187, 566
Hpy188III	TCNNGA	2 cut(s)	83, 455
Hpy99I	CGWCG	3 cut(s)	137, 344, 533
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 620
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	152, 452, 458, 608
HspAI	GCGC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	79, 445
LguI	GCTCTTC	2 cut(s)	120, 269
LmnI	GCTCC	2 cut(s)	39, 547
LpnPI	CCDG	6 cut(s)	78, 177, 340, 405, 565, 642
Lsp1109I	GCAGC	2 cut(s)	604, 607
MaeI	CTAG	3 cut(s)	38, 579, 630
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	209, 596, 647
MalI	GATC	2 cut(s)	81, 447
MboI	GATC	2 cut(s)	79, 445
MhlI	GDGCHC	4 cut(s)	132, 339, 472, 552
MluCI	AATT	2 cut(s)	570, 582
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	3 cut(s)	139, 367, 520
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	4 cut(s)	65, 164, 327, 392
MspR9I	CCNGG	2 cut(s)	65, 66
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	534, 620
NciI	CCSGG	2 cut(s)	65, 66
NcoI	CCATGG	2 cut(s)	148, 604
NdeII	GATC	2 cut(s)	79, 445
NlaIII	CATG	4 cut(s)	152, 452, 458, 608
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	647
PagI	TCATGA	1 cut(s)	454
PciSI	GCTCTTC	2 cut(s)	120, 269
PflFI	GACNNNGTC	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	616, 619, 622
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	3 cut(s)	145, 161, 389
PsyI	GACNNNGTC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	453
SapI	GCTCTTC	2 cut(s)	120, 269
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	3 cut(s)	615, 618, 621
Sau3AI	GATC	2 cut(s)	79, 445
Sau96I	GGNCC	3 cut(s)	145, 161, 389
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	2 cut(s)	65, 66
SduI	GDGCHC	4 cut(s)	132, 339, 472, 552
SinI	GGWCC	3 cut(s)	145, 161, 389
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	2 cut(s)	570, 582
SsiI	CCGC	3 cut(s)	69, 465, 614
SspMI	CTAG	3 cut(s)	38, 579, 630
StyD4I	CCNGG	2 cut(s)	63, 64
StyI	CCWWGG	2 cut(s)	148, 604
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	339, 372, 404
TasI	AATT	2 cut(s)	570, 582
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	617, 620
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	251, 269, 281, 443
TspGWI	ACGGA	2 cut(s)	312, 330
TspMI	CCCGGG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	559
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	145, 161, 389
XapI	RAATTY	1 cut(s)	570
XcmI	CCANNNNNNNNNTGG	4 cut(s)	146, 155, 383, 503
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	3 cut(s)	38, 579, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.