Rh7BG462200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008854
Physical Location & Seq
Reverse (-)
54796490 .. 54797584
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG462200.1

Sequence Viewer

Length: 315 bp
ATGACCATTTTGCCCTCAGCCCAATTAAACAATTACAACCATTGCCACTCAACACCAATCTCTCACACATCCCGATCTCTCTCTCCTCTCTCTATGCCCCTCCCTCTCTCCCTACTGACCTCCGGCTCCGGCGCACGACCCAGGCTCTCTCTCCCCTCCGGCGCTGGACCCAAGCCGTCTCCCTTTCCTCCAGACTCGGGCCGCCCACCACGGCTTCGTCACCGGAGGAATCGACCTCGACGACTCTGTCCAGATTGGAGTCGACCTCGACGACTGGCTGGTCCTAGTCCAGCACCACTTCACCGTCGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.45

Weight (kDa)

12.0

Isoelectric Point (pI)

98.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 246, 279
AccI GTMKAC 1 cut(s) 262
AciI CCGC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 197
AjnI CCWGG 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 1 cut(s) 199
AspLEI GCGC 2 cut(s) 134, 164
AspS9I GGNCC 3 cut(s) 167, 199, 281
AsuHPI GGTGA 2 cut(s) 212, 293
AvaI CYCGRG 1 cut(s) 196
AvaII GGWCC 2 cut(s) 167, 281
BbvCI CCTCAGC 1 cut(s) 16
BceAI ACGGC 2 cut(s) 160, 227
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 2 cut(s) 167, 281
BmeT110I CYCGRG 1 cut(s) 196
BmgT120I GGNCC 3 cut(s) 167, 199, 281
BmiI GGNNCC 2 cut(s) 127, 169
BmrFI CCNGG 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 250, 282
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 140, 209
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 140, 209
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 4 cut(s) 123, 129, 159, 223
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 2 cut(s) 74, 308
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 127, 169
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 140, 209
BssMI GATC 2 cut(s) 74, 308
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 134, 164
BstKTI GATC 2 cut(s) 77, 311
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 74, 308
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 68
CfoI GCGC 2 cut(s) 134, 164
Cfr13I GGNCC 3 cut(s) 167, 199, 281
CviJI RGCY 7 cut(s) 20, 126, 145, 175, 201, 214, 278
CviKI_1 RGCY 7 cut(s) 20, 126, 145, 175, 201, 214, 278
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 76, 310
DpnII GATC 2 cut(s) 74, 308
DrdI GACNNNNNNGTC 2 cut(s) 246, 279
DseDI GACNNNNNNGTC 2 cut(s) 246, 279
Eco47I GGWCC 2 cut(s) 167, 281
Eco88I CYCGRG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 183
FaiI YATR 2 cut(s) 95, 313
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 285
GlaI GCGC 2 cut(s) 133, 163
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 201
HapII CCGG 4 cut(s) 123, 129, 159, 223
HhaI GCGC 2 cut(s) 134, 164
Hin6I GCGC 2 cut(s) 132, 162
HinP1I GCGC 2 cut(s) 132, 162
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 4 cut(s) 194, 229, 243, 259
HpaII CCGG 4 cut(s) 123, 129, 159, 223
HphI GGTGA 2 cut(s) 212, 293
Hpy166II GTNNAC 1 cut(s) 263
Hpy188III TCNNGA 3 cut(s) 72, 191, 251
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 3 cut(s) 243, 273, 309
HpyCH4III ACNGT 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 16
HspAI GCGC 2 cut(s) 132, 162
Kzo9I GATC 2 cut(s) 74, 308
LmnI GCTCC 1 cut(s) 131
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 76, 310
MboI GATC 2 cut(s) 74, 308
MluCI AATT 2 cut(s) 23, 31
MlyI GAGTC 3 cut(s) 188, 237, 268
MseI TTAA 1 cut(s) 26
MspI CCGG 4 cut(s) 123, 129, 159, 223
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
NdeII GATC 2 cut(s) 74, 308
NlaIV GGNNCC 2 cut(s) 127, 169
NmuCI GTSAC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 2 cut(s) 238, 268
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 3 cut(s) 188, 237, 267
PpsI GAGTC 3 cut(s) 188, 237, 267
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 127, 169
PspPI GGNCC 3 cut(s) 167, 199, 281
PsyI GACNNNGTC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 2 cut(s) 74, 308
Sau96I GGNCC 3 cut(s) 167, 199, 281
SchI GAGTC 3 cut(s) 188, 237, 268
ScrFI CCNGG 1 cut(s) 142
SetI ASST 3 cut(s) 122, 238, 268
SinI GGWCC 2 cut(s) 167, 281
Sse9I AATT 2 cut(s) 23, 31
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 5 cut(s) 232, 238, 262, 268, 307
TasI AATT 2 cut(s) 23, 31
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 167, 281
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.