RLG00000016156

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008854
Physical Location & Seq
Reverse (-)
4365642 .. 4366749
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016156

Sequence Viewer

Length: 372 bp
ATGATTATGGTTGAGAAGCTGGCCAACATCCAAAGAGTAAACGCAATCACTTTCCCGCTCCGGCGCTCGACCCAGGCAGTTTACCTCTCTCCTCCAGACTCGGGCAACCCACCACGGCGTCGTTACCAGAGGAATCGACCTCAACGACTCGGTCCAGATCAGAGTCGACCTCAACGACTGGTTGGTCCTAATCCAGATCGGAAAAATGCTGAACTTGAAGGAAGTGAATCGGAGATTGGGGATGTTGACCAGGCTCCTTCGCCTCTTCCAGCCACCACTTCTCCACGGATCACAGCGCCGAATTCGAAGTTGACGACTTCTCCGCCAACGATGACGGCCGTTCCACTCCCAAGTCCTCCTCCGCCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.48

Weight (kDa)

10.77

Isoelectric Point (pI)

86.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 183
AccBSI CCGCTC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 166
AciI CCGC 3 cut(s) 56, 323, 362
AclWI GGATC 1 cut(s) 296
AcoI YGGCCR 2 cut(s) 21, 336
AcsI RAATTY 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 2 cut(s) 72, 249
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 2 cut(s) 21, 336
ApoI RAATTY 1 cut(s) 301
AspLEI GCGC 2 cut(s) 66, 298
AspS9I GGNCC 2 cut(s) 152, 185
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 152, 185
BalI TGGCCA 1 cut(s) 23
BceAI ACGGC 3 cut(s) 131, 323, 351
BciT130I CCWGG 2 cut(s) 74, 251
BfoI RGCGCY 2 cut(s) 67, 299
Bme1390I CCNGG 2 cut(s) 74, 251
Bme18I GGWCC 2 cut(s) 152, 185
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 152, 185
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 2 cut(s) 74, 251
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 72, 113, 284
BsaXI ACNNNNNCTCC 4 cut(s) 265, 295, 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 74, 251
BseDI CCNNGG 3 cut(s) 72, 113, 284
BseGI GGATG 2 cut(s) 27, 247
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 81, 348
BseX3I CGGCCG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 23, 338
BsiEI CGRYCG 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 101
BsnI GGCC 2 cut(s) 23, 338
BsoBI CYCGRG 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 3 cut(s) 157, 196, 288
BspACI CCGC 3 cut(s) 56, 323, 362
BspANI GGCC 2 cut(s) 23, 338
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 3 cut(s) 72, 113, 284
BssMI GATC 3 cut(s) 157, 196, 288
BssNI GRCGYC 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 74, 251
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 2 cut(s) 113, 284
BstF5I GGATG 2 cut(s) 27, 247
BstH2I RGCGCY 2 cut(s) 67, 299
BstHHI GCGC 2 cut(s) 66, 298
BstKTI GATC 3 cut(s) 160, 199, 291
BstMBI GATC 3 cut(s) 157, 196, 288
BstMCI CGRYCG 1 cut(s) 339
BstNI CCWGG 2 cut(s) 74, 251
BstSCI CCNGG 2 cut(s) 72, 249
BstZI CGGCCG 1 cut(s) 336
BsuRI GGCC 2 cut(s) 23, 338
BtgI CCRYGG 2 cut(s) 113, 284
BtsCI GGATG 2 cut(s) 27, 247
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 2 cut(s) 66, 298
Cfr13I GGNCC 2 cut(s) 152, 185
CseI GACGC 1 cut(s) 107
CviJI RGCY 5 cut(s) 19, 23, 254, 272, 338
CviKI_1 RGCY 5 cut(s) 19, 23, 254, 272, 338
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 159, 198, 290
DpnII GATC 3 cut(s) 157, 196, 288
DrdI GACNNNNNNGTC 1 cut(s) 183
DseDI GACNNNNNNGTC 1 cut(s) 183
EaeI YGGCCR 2 cut(s) 21, 336
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 2 cut(s) 312, 351
EclXI CGGCCG 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 152, 185
Eco52I CGGCCG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 72, 249
FaiI YATR 1 cut(s) 8
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 166
FokI GGATG 2 cut(s) 14, 254
GlaI GCGC 2 cut(s) 65, 297
GsuI CTGGAG 1 cut(s) 78
HaeII RGCGCY 2 cut(s) 67, 299
HaeIII GGCC 2 cut(s) 23, 338
HapII CCGG 1 cut(s) 61
HgaI GACGC 1 cut(s) 107
HhaI GCGC 2 cut(s) 66, 298
Hin1I GRCGYC 1 cut(s) 118
Hin6I GCGC 2 cut(s) 64, 296
HinP1I GCGC 2 cut(s) 64, 296
HincII GTYRAC 3 cut(s) 167, 247, 312
HindII GTYRAC 3 cut(s) 167, 247, 312
HinfI GANTC 5 cut(s) 98, 133, 147, 163, 227
HpaII CCGG 1 cut(s) 61
Hpy166II GTNNAC 5 cut(s) 40, 82, 167, 247, 312
Hpy188I TCNGA 3 cut(s) 162, 201, 232
Hpy188III TCNNGA 3 cut(s) 95, 155, 194
Hpy8I GTNNAC 5 cut(s) 40, 82, 167, 247, 312
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 2 cut(s) 212, 267
HpyF3I CTNAG 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 118
HspAI GCGC 2 cut(s) 64, 296
Kzo9I GATC 3 cut(s) 157, 196, 288
LmnI GCTCC 2 cut(s) 63, 259
MaeIII GTNAC 1 cut(s) 122
MalI GATC 3 cut(s) 159, 198, 290
MbiI CCGCTC 1 cut(s) 58
MboI GATC 3 cut(s) 157, 196, 288
MboII GAAGA 1 cut(s) 257
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 1 cut(s) 301
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 3 cut(s) 92, 141, 172
MnlI CCTC 8 cut(s) 95, 102, 123, 150, 180, 273, 366, 369
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 74, 251
MvaI CCWGG 2 cut(s) 74, 251
NdeII GATC 3 cut(s) 157, 196, 288
NlaIV GGNNCC 1 cut(s) 255
NspV TTCGAA 1 cut(s) 305
PcsI WCGNNNNNNNCGW 3 cut(s) 142, 172, 311
PfeI GAWTC 2 cut(s) 133, 227
PflFI GACNNNGTC 1 cut(s) 150
PleI GAGTC 3 cut(s) 92, 141, 171
PpsI GAGTC 3 cut(s) 92, 141, 171
Psp6I CCWGG 2 cut(s) 72, 249
PspGI CCWGG 2 cut(s) 72, 249
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 2 cut(s) 152, 185
PsyI GACNNNGTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 157, 196, 288
Sau96I GGNCC 2 cut(s) 152, 185
SchI GAGTC 3 cut(s) 92, 141, 172
ScrFI CCNGG 2 cut(s) 74, 251
SetI ASST 4 cut(s) 21, 87, 142, 172
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 152, 185
Sse9I AATT 1 cut(s) 301
SsiI CCGC 3 cut(s) 56, 323, 362
StyD4I CCNGG 2 cut(s) 72, 249
TaqI TCGA 4 cut(s) 68, 136, 166, 305
TaqII GACCGA 1 cut(s) 140
TasI AATT 1 cut(s) 301
TfiI GAWTC 2 cut(s) 133, 227
TspGWI ACGGA 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 152, 185
XapI RAATTY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.