RLG00000007028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008854
Physical Location & Seq
Forward (+)
12788035 .. 12791462
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007028

Sequence Viewer

Length: 984 bp
ATGGCAACAGTTGCGTCACTCGTAGGCAACTCAATTTTCTTGCGCAATCCTCACCCAAAGTACAGCGCAGCAAAACTGAGCGCAACTTATAACAGTCGACGTGCCAATGTTTCTTTTTCTTCTGCTCCTAAATTCAATGTCGACCTTAAACTTAAGAGTTTCTTCTCCGCAGCGGAGAATAACCAGTACTCAACCTCCACCGCCGACTCAAAAGTATTAGGGAGCCATGCCTCTCTTTGTAAGCCGCCTAATGCAATTAAAGATCACCTTGGTATTGGAAAACCACTTGGACGGATCGGTGGGAAGTGGTCGACGAAATATCCGTACGACCCTAAGTCTAGGAACCCTAGCGACTCGCCTTGGTCTCGGGTACATGCATACATCTTCTTCTTTCTTCTTCTCGCACCGTTTGTCTGCGCTCTTGTTGGTTTGCCTATTTGGTTTAGGGCATTAGCCTTGATAATCTTGGCAACTCCCATGGCTCTGGATTCATGGTCCTCTGGAGAAACAAGTGTTGTCAAGCTCCAGTCCCGATATCTCTCTCCCTCCCACCTTCCCTTCCTACTGACCTCCGGCTCCGGCGCACGAGTCAGGCCGTCTCCTGCTCCAGCGCTCGACCCAGGCAGTCTCCGGCTCCGGCGCTCCACCCAGGCAGTCTACCTCTCTCCTCCAGACTCGAGCCGCCTACCACGGCGTGGTCACCAGAGGAATCGATCTCGACGACTCGGTCCAGATCGGAGTCGACCTCGACGACTGGCTGGTCCTAATCCAGATCCGAAGAATGCTGAACCTGAAGGAAGTGAATCGGAGATTGGGGATGTTGACCAGGCTCCTTCGCCTCCTCCAGCCACCACTTCTCCACGGATCACAGCGTCAAATTCGAAGTCGACGACTTCTCCACCAACGATGATGGCGGTTCCACTCCCAAGTCCTCCTCTGCCGCGGCGATTCATCGAACACCACGAGCTACAGGTCCACCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

35.67

Weight (kDa)

10.66

Isoelectric Point (pI)

64.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AasI GACNNNNNNGTC 2 cut(s) 726, 759
Acc16I TGCGCA 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 695
AccI GTMKAC 6 cut(s) 97, 141, 311, 657, 742, 887
AccII CGCG 1 cut(s) 943
AciI CCGC 8 cut(s) 168, 173, 201, 245, 682, 914, 941, 943
AclWI GGATC 3 cut(s) 302, 767, 872
AcsI RAATTY 2 cut(s) 131, 877
AcuI CTGAAG 1 cut(s) 813
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 4 cut(s) 62, 188, 326, 372
AfeI AGCGCT 1 cut(s) 612
AfiI CCNNNNNNNGG 1 cut(s) 695
AflII CTTAAG 1 cut(s) 152
AgeI ACCGGT 1 cut(s) 978
AgsI TTSAA 1 cut(s) 136
AhdI GACNNNNNGTC 1 cut(s) 334
AjiI CACGTC 1 cut(s) 101
AjnI CCWGG 3 cut(s) 619, 648, 825
AjuI GAANNNNNNNTTGG 2 cut(s) 795, 827
AluBI AGCT 2 cut(s) 523, 967
AluI AGCT 2 cut(s) 523, 967
Alw26I GTCTC 3 cut(s) 369, 603, 632
AlwI GGATC 3 cut(s) 302, 767, 872
Ama87I CYCGRG 2 cut(s) 366, 676
Aor51HI AGCGCT 1 cut(s) 612
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 2 cut(s) 68, 170
ApoI RAATTY 2 cut(s) 131, 877
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AsiGI ACCGGT 1 cut(s) 978
AspLEI GCGC 7 cut(s) 45, 68, 83, 419, 584, 613, 642
AspS9I GGNCC 4 cut(s) 495, 728, 761, 973
AsuHPI GGTGA 3 cut(s) 44, 257, 692
AsuII TTCGAA 1 cut(s) 881
AvaI CYCGRG 2 cut(s) 366, 676
AvaII GGWCC 4 cut(s) 495, 728, 761, 973
BauI CACGAG 2 cut(s) 585, 962
BbvI GCAGC 2 cut(s) 80, 182
BccI CCATC 1 cut(s) 904
BceAI ACGGC 2 cut(s) 580, 707
BciT130I CCWGG 3 cut(s) 621, 650, 827
BcoDI GTCTC 3 cut(s) 369, 603, 632
BfaI CTAG 2 cut(s) 339, 348
BfmI CTRYAG 1 cut(s) 968
BfoI RGCGCY 2 cut(s) 614, 643
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 6 cut(s) 69, 171, 245, 682, 941, 944
BlsI GCNGC 6 cut(s) 70, 172, 246, 683, 942, 945
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 621, 650, 827
Bme18I GGWCC 4 cut(s) 495, 728, 761, 973
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 2 cut(s) 366, 676
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 4 cut(s) 495, 728, 761, 973
BmiI GGNNCC 6 cut(s) 224, 344, 577, 635, 831, 918
BmrFI CCNGG 3 cut(s) 621, 650, 827
BplI GAGNNNNNCTC 2 cut(s) 730, 762
BpmI CTGGAG 5 cut(s) 509, 522, 591, 654, 828
Bpu14I TTCGAA 1 cut(s) 881
Bsa29I ATCGAT 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 8 cut(s) 268, 359, 477, 619, 648, 689, 860, 941
BsaWI WCCGGW 1 cut(s) 978
BsaXI ACNNNNNCTCC 6 cut(s) 179, 209, 841, 871, 880, 910
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse118I RCCGGY 1 cut(s) 978
Bse1I ACTGG 3 cut(s) 184, 526, 759
BseBI CCWGG 3 cut(s) 621, 650, 827
BseCI ATCGAT 1 cut(s) 712
BseDI CCNNGG 8 cut(s) 268, 359, 477, 619, 648, 689, 860, 941
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 3 cut(s) 184, 526, 759
BseRI GAGGAG 3 cut(s) 657, 831, 924
BseXI GCAGC 2 cut(s) 80, 182
Bsh1236I CGCG 1 cut(s) 943
BshFI GGCC 1 cut(s) 595
BshTI ACCGGT 1 cut(s) 978
BshVI ATCGAT 1 cut(s) 712
BsiHKCI CYCGRG 2 cut(s) 366, 676
BsiSI CCGG 5 cut(s) 573, 579, 631, 637, 979
BsiWI CGTACG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 3 cut(s) 369, 603, 632
BsmBI CGTCTC 1 cut(s) 603
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 1 cut(s) 595
Bso31I GGTCTC 1 cut(s) 369
BsoBI CYCGRG 2 cut(s) 366, 676
Bsp119I TTCGAA 1 cut(s) 881
Bsp143I GATC 6 cut(s) 262, 294, 713, 733, 772, 864
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 8 cut(s) 168, 173, 201, 245, 682, 914, 941, 943
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 712
BspFNI CGCG 1 cut(s) 943
BspLI GGNNCC 6 cut(s) 224, 344, 577, 635, 831, 918
BspPI GGATC 3 cut(s) 302, 767, 872
BspT104I TTCGAA 1 cut(s) 881
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 978
BsrI ACTGG 3 cut(s) 184, 526, 759
BssAI RCCGGY 1 cut(s) 978
BssECI CCNNGG 8 cut(s) 268, 359, 477, 619, 648, 689, 860, 941
BssMI GATC 6 cut(s) 262, 294, 713, 733, 772, 864
BssSI CACGAG 2 cut(s) 585, 962
BssT1I CCWWGG 3 cut(s) 268, 359, 477
Bst2BI CACGAG 2 cut(s) 585, 962
Bst2UI CCWGG 3 cut(s) 621, 650, 827
Bst4CI ACNGT 3 cut(s) 10, 95, 408
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 881
BstDEI CTNAG 2 cut(s) 77, 333
BstDSI CCRYGG 4 cut(s) 477, 689, 860, 941
BstEII GGTNACC 1 cut(s) 698
BstF5I GGATG 1 cut(s) 823
BstFNI CGCG 1 cut(s) 943
BstH2I RGCGCY 2 cut(s) 614, 643
BstHHI GCGC 7 cut(s) 45, 68, 83, 419, 584, 613, 642
BstKTI GATC 6 cut(s) 265, 297, 716, 736, 775, 867
BstMAI GTCTC 3 cut(s) 369, 603, 632
BstMBI GATC 6 cut(s) 262, 294, 713, 733, 772, 864
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 621, 650, 827
BstNSI RCATGY 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 698
BstSCI CCNGG 3 cut(s) 619, 648, 825
BstSFI CTRYAG 1 cut(s) 968
BstUI CGCG 1 cut(s) 943
BstV1I GCAGC 2 cut(s) 80, 182
BstX2I RGATCY 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 484
BstYI RGATCY 1 cut(s) 772
Bsu15I ATCGAT 1 cut(s) 712
BsuRI GGCC 1 cut(s) 595
BsuTUI ATCGAT 1 cut(s) 712
BtgI CCRYGG 4 cut(s) 477, 689, 860, 941
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 823
CfoI GCGC 7 cut(s) 45, 68, 83, 419, 584, 613, 642
Cfr10I RCCGGY 1 cut(s) 978
Cfr13I GGNCC 4 cut(s) 495, 728, 761, 973
Cfr42I CCGCGG 1 cut(s) 944
ClaI ATCGAT 1 cut(s) 712
CseI GACGC 2 cut(s) 3, 861
Csp6I GTAC 4 cut(s) 61, 187, 325, 371
CspAI ACCGGT 1 cut(s) 978
CviAII CATG 4 cut(s) 227, 374, 478, 492
CviQI GTAC 4 cut(s) 61, 187, 325, 371
DdeI CTNAG 2 cut(s) 77, 333
DpnI GATC 6 cut(s) 264, 296, 715, 735, 774, 866
DpnII GATC 6 cut(s) 262, 294, 713, 733, 772, 864
DraIII CACNNNGTG 1 cut(s) 695
DrdI GACNNNNNNGTC 2 cut(s) 726, 759
DriI GACNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 2 cut(s) 726, 759
Eam1105I GACNNNNNGTC 1 cut(s) 334
Eco130I CCWWGG 3 cut(s) 268, 359, 477
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 536
Eco47I GGWCC 4 cut(s) 495, 728, 761, 973
Eco47III AGCGCT 1 cut(s) 612
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 2 cut(s) 366, 676
Eco91I GGTNACC 1 cut(s) 698
EcoO65I GGTNACC 1 cut(s) 698
EcoRII CCWGG 3 cut(s) 619, 648, 825
EcoRV GATATC 1 cut(s) 536
EcoT14I CCWWGG 3 cut(s) 268, 359, 477
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 3 cut(s) 268, 359, 477
Esp3I CGTCTC 1 cut(s) 603
FaeI CATG 4 cut(s) 230, 377, 481, 495
FaiI YATR 6 cut(s) 90, 228, 375, 379, 479, 493
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 252, 284
FaqI GGGAC 1 cut(s) 514
FatI CATG 4 cut(s) 226, 373, 477, 491
FblI GTMKAC 6 cut(s) 97, 141, 311, 657, 742, 887
Fnu4HI GCNGC 6 cut(s) 69, 171, 245, 682, 941, 944
FokI GGATG 1 cut(s) 830
Fsp4HI GCNGC 6 cut(s) 69, 171, 245, 682, 941, 944
FspBI CTAG 2 cut(s) 339, 348
FspI TGCGCA 1 cut(s) 44
GlaI GCGC 7 cut(s) 44, 67, 82, 418, 583, 612, 641
GluI GCNGC 6 cut(s) 69, 171, 245, 682, 941, 944
GsuI CTGGAG 5 cut(s) 509, 522, 591, 654, 828
HaeII RGCGCY 2 cut(s) 614, 643
HaeIII GGCC 1 cut(s) 595
HapII CCGG 5 cut(s) 573, 579, 631, 637, 979
HgaI GACGC 2 cut(s) 3, 861
HhaI GCGC 7 cut(s) 45, 68, 83, 419, 584, 613, 642
Hin1II CATG 4 cut(s) 230, 377, 481, 495
Hin6I GCGC 7 cut(s) 43, 66, 81, 417, 582, 611, 640
HinP1I GCGC 7 cut(s) 43, 66, 81, 417, 582, 611, 640
HincII GTYRAC 6 cut(s) 98, 142, 312, 743, 823, 888
HindII GTYRAC 6 cut(s) 98, 142, 312, 743, 823, 888
HpaII CCGG 5 cut(s) 573, 579, 631, 637, 979
HphI GGTGA 3 cut(s) 44, 257, 692
Hpy166II GTNNAC 8 cut(s) 98, 142, 312, 658, 743, 823, 888, 976
Hpy188I TCNGA 3 cut(s) 738, 777, 808
Hpy188III TCNNGA 7 cut(s) 485, 501, 531, 671, 717, 731, 770
Hpy8I GTNNAC 8 cut(s) 98, 142, 312, 658, 743, 823, 888, 976
Hpy99I CGWCG 5 cut(s) 102, 316, 723, 753, 892
HpyAV CCTTC 4 cut(s) 563, 568, 788, 843
HpyCH4III ACNGT 3 cut(s) 10, 95, 408
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 254, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 77, 333
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 4 cut(s) 230, 377, 481, 495
HspAI GCGC 7 cut(s) 43, 66, 81, 417, 582, 611, 640
KspI CCGCGG 1 cut(s) 944
Kzo9I GATC 6 cut(s) 262, 294, 713, 733, 772, 864
LmnI GCTCC 8 cut(s) 130, 222, 528, 581, 610, 639, 647, 835
Lsp1109I GCAGC 2 cut(s) 80, 182
MaeI CTAG 2 cut(s) 339, 348
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 15, 698
MalI GATC 6 cut(s) 264, 296, 715, 735, 774, 866
MboI GATC 6 cut(s) 262, 294, 713, 733, 772, 864
MboII GAAGA 7 cut(s) 111, 154, 376, 379, 386, 389, 790
MflI RGATCY 1 cut(s) 772
MluCI AATT 4 cut(s) 33, 131, 255, 877
MlyI GAGTC 6 cut(s) 200, 347, 597, 668, 717, 748
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 3 cut(s) 147, 153, 258
MspA1I CMGCKG 2 cut(s) 173, 943
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 5 cut(s) 573, 579, 631, 637, 979
MspR9I CCNGG 3 cut(s) 621, 650, 827
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 3 cut(s) 621, 650, 827
MvnI CGCG 1 cut(s) 943
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 477
NdeII GATC 6 cut(s) 262, 294, 713, 733, 772, 864
NlaIII CATG 4 cut(s) 230, 377, 481, 495
NlaIV GGNNCC 6 cut(s) 224, 344, 577, 635, 831, 918
NmuCI GTSAC 2 cut(s) 15, 698
NsbI TGCGCA 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 377
NspV TTCGAA 1 cut(s) 881
PaeR7I CTCGAG 1 cut(s) 676
PcsI WCGNNNNNNNCGW 5 cut(s) 320, 718, 748, 887, 960
PctI GAATGC 1 cut(s) 787
PfeI GAWTC 4 cut(s) 488, 709, 803, 948
Pfl23II CGTACG 1 cut(s) 324
PflFI GACNNNGTC 1 cut(s) 726
PflMI CCANNNNNTGG 1 cut(s) 695
PinAI ACCGGT 1 cut(s) 978
PkrI GCNGC 6 cut(s) 70, 172, 246, 683, 942, 945
PleI GAGTC 6 cut(s) 200, 347, 596, 668, 717, 747
PpsI GAGTC 6 cut(s) 200, 347, 596, 668, 717, 747
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 619, 648, 825
PspEI GGTNACC 1 cut(s) 698
PspGI CCWGG 3 cut(s) 619, 648, 825
PspLI CGTACG 1 cut(s) 324
PspN4I GGNNCC 6 cut(s) 224, 344, 577, 635, 831, 918
PspPI GGNCC 4 cut(s) 495, 728, 761, 973
PspXI VCTCGAGB 1 cut(s) 676
PsuI RGATCY 1 cut(s) 772
PsyI GACNNNGTC 1 cut(s) 726
RsaI GTAC 4 cut(s) 62, 188, 326, 372
RsaNI GTAC 4 cut(s) 61, 187, 325, 371
SacII CCGCGG 1 cut(s) 944
SalI GTCGAC 5 cut(s) 96, 140, 310, 741, 886
SaqAI TTAA 3 cut(s) 147, 153, 258
SatI GCNGC 6 cut(s) 69, 171, 245, 682, 941, 944
Sau3AI GATC 6 cut(s) 262, 294, 713, 733, 772, 864
Sau96I GGNCC 4 cut(s) 495, 728, 761, 973
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 6 cut(s) 200, 347, 597, 668, 717, 748
ScrFI CCNGG 3 cut(s) 621, 650, 827
SfcI CTRYAG 1 cut(s) 968
Sfr274I CTCGAG 1 cut(s) 676
Sfr303I CCGCGG 1 cut(s) 944
SfuI TTCGAA 1 cut(s) 881
SgrBI CCGCGG 1 cut(s) 944
SinI GGWCC 4 cut(s) 495, 728, 761, 973
SlaI CTCGAG 1 cut(s) 676
SmlI CTYRAG 2 cut(s) 152, 676
SmoI CTYRAG 2 cut(s) 152, 676
Sse9I AATT 4 cut(s) 33, 131, 255, 877
SsiI CCGC 8 cut(s) 168, 173, 201, 245, 682, 914, 941, 943
SspMI CTAG 2 cut(s) 339, 348
StyD4I CCNGG 3 cut(s) 619, 648, 825
StyI CCWWGG 3 cut(s) 268, 359, 477
TaaI ACNGT 3 cut(s) 10, 95, 408
TaiI ACGT 1 cut(s) 103
TaqII GACCGA 1 cut(s) 716
TasI AATT 4 cut(s) 33, 131, 255, 877
TatI WGTACW 2 cut(s) 60, 186
TauI GCSGC 4 cut(s) 247, 684, 943, 946
TfiI GAWTC 4 cut(s) 488, 709, 803, 948
Tru1I TTAA 3 cut(s) 147, 153, 258
Tru9I TTAA 3 cut(s) 147, 153, 258
TseFI GTSAC 2 cut(s) 15, 698
TseI GCWGC 2 cut(s) 68, 170
Tsp45I GTSAC 2 cut(s) 15, 698
TspDTI ATGAA 2 cut(s) 480, 940
TspGWI ACGGA 3 cut(s) 307, 312, 877
Tth111I GACNNNGTC 1 cut(s) 726
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 4 cut(s) 495, 728, 761, 973
XapI RAATTY 2 cut(s) 131, 877
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 676
XmiI GTMKAC 6 cut(s) 97, 141, 311, 657, 742, 887
XspI CTAG 2 cut(s) 339, 348
ZrmI AGTACT 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.