Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Reverse (-)

52080584 .. 52082783

Gene Structure 2200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAACAGTTGCATCACTCGTAGCCAACTCAATTTTCTTGCGCAATCCTCACCCAAAGTTCAGCGCAGCAAAACTGAGCGCAACTTATGACAGTCGCCCTGCCTCTGTTTCTTTTTCTTCTGCTCCTAAATTCAATGTCGACCTTAGACTTAAGAGCTTCTTCTCCGCAGCGGAGAATAACCAGTACATAACCTCCACCGCCGACTCAAAAGTATTAGGGAGCCATGCCTCTCTTTGTAAGCCGCCTAATGCTATTAAAGTCACCTTGGTATTGGAAAACCACTTGGACGGATCGGTGGGAAGTGATCGACGAAGTATCCGTACGACCCTAAGTCGAGGAACCCTGGCGACTCGCCTTGGTATGTGGTTCATGCATACATCTTCTTCTATCTTCTTCTCGCACCGTTTGTCTGCGCTGCTGTTGGTTTGCCTATTTGGTTTAGGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.25

Weight (kDa)

10.29

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	4 cut(s)	168, 173, 201, 245
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	2 cut(s)	188, 325
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	136
AhdI	GACNNNNNGTC	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AlwI	GGATC	1 cut(s)	301
ApeKI	GCWGC	3 cut(s)	68, 170, 418
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	4 cut(s)	45, 68, 83, 418
AsuHPI	GGTGA	2 cut(s)	44, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	307, 339
BbvI	GCAGC	3 cut(s)	80, 182, 405
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	4 cut(s)	69, 171, 245, 419
BlsI	GCNGC	4 cut(s)	70, 172, 246, 420
Bme1390I	CCNGG	1 cut(s)	347
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	224, 343
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	267, 345, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	267, 345, 358
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	80, 182, 405
BsiWI	CGTACG	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	293, 307
BspACI	CCGC	4 cut(s)	168, 173, 201, 245
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	224, 343
BspPI	GGATC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	267, 345, 358
BssMI	GATC	2 cut(s)	293, 307
BssT1I	CCWWGG	2 cut(s)	267, 358
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	10, 95, 407
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	77, 146, 332
BstHHI	GCGC	4 cut(s)	45, 68, 83, 418
BstKTI	GATC	2 cut(s)	296, 310
BstMBI	GATC	2 cut(s)	293, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	80, 182, 405
BsuI	GTATCC	1 cut(s)	329
CfoI	GCGC	4 cut(s)	45, 68, 83, 418
Csp6I	GTAC	2 cut(s)	187, 324
CviAII	CATG	2 cut(s)	227, 373
CviJI	RGCY	4 cut(s)	26, 159, 225, 244
CviKI_1	RGCY	4 cut(s)	26, 159, 225, 244
CviQI	GTAC	2 cut(s)	187, 324
DdeI	CTNAG	3 cut(s)	77, 146, 332
DpnI	GATC	2 cut(s)	295, 309
DpnII	GATC	2 cut(s)	293, 307
DriI	GACNNNNNGTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	267, 358
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	267, 358
EcoT22I	ATGCAT	1 cut(s)	378
ErhI	CCWWGG	2 cut(s)	267, 358
FaeI	CATG	2 cut(s)	230, 376
FaiI	YATR	6 cut(s)	90, 191, 228, 365, 374, 378
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	2 cut(s)	226, 372
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	69, 171, 245, 419
Fsp4HI	GCNGC	4 cut(s)	69, 171, 245, 419
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	4 cut(s)	44, 67, 82, 417
GluI	GCNGC	4 cut(s)	69, 171, 245, 419
HhaI	GCGC	4 cut(s)	45, 68, 83, 418
Hin1II	CATG	2 cut(s)	230, 376
Hin6I	GCGC	4 cut(s)	43, 66, 81, 416
HinP1I	GCGC	4 cut(s)	43, 66, 81, 416
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	206, 352
HphI	GGTGA	2 cut(s)	44, 256
Hpy166II	GTNNAC	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	315
HpyCH4III	ACNGT	3 cut(s)	10, 95, 407
HpyCH4V	TGCA	2 cut(s)	14, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	77, 146, 332
Hsp92II	CATG	2 cut(s)	230, 376
HspAI	GCGC	4 cut(s)	43, 66, 81, 416
Kzo9I	GATC	2 cut(s)	293, 307
LmnI	GCTCC	2 cut(s)	130, 222
LpnPI	CCDG	4 cut(s)	114, 197, 332, 359
Lsp1109I	GCAGC	3 cut(s)	80, 182, 405
LweI	GCATC	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	295, 309
MboI	GATC	2 cut(s)	293, 307
MboII	GAAGA	6 cut(s)	111, 154, 375, 378, 385, 388
MluCI	AATT	2 cut(s)	33, 131
MlyI	GAGTC	2 cut(s)	200, 346
MnlI	CCTC	5 cut(s)	60, 115, 205, 241, 332
Mph1103I	ATGCAT	1 cut(s)	378
MseI	TTAA	2 cut(s)	153, 258
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	293, 307
NlaIII	CATG	2 cut(s)	230, 376
NlaIV	GGNNCC	2 cut(s)	224, 343
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
Pfl23II	CGTACG	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	70, 172, 246, 420
PleI	GAGTC	2 cut(s)	200, 346
PpsI	GAGTC	2 cut(s)	200, 346
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspLI	CGTACG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	224, 343
RsaI	GTAC	2 cut(s)	188, 325
RsaNI	GTAC	2 cut(s)	187, 324
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	153, 258
SatI	GCNGC	4 cut(s)	69, 171, 245, 419
Sau3AI	GATC	2 cut(s)	293, 307
SchI	GAGTC	2 cut(s)	200, 346
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	4 cut(s)	147, 161, 197, 269
SfaNI	GCATC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	33, 131
SsiI	CCGC	4 cut(s)	168, 173, 201, 245
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	267, 358
TaaI	ACNGT	3 cut(s)	10, 95, 407
TaqI	TCGA	3 cut(s)	141, 310, 337
TasI	AATT	2 cut(s)	33, 131
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	153, 258
Tru9I	TTAA	2 cut(s)	153, 258
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	68, 170, 418
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	306, 311
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.