Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Forward (+)

3543889 .. 3546640

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAGGCAAACCAAGACCACCCCAACCACCCCCGAAACGACGACGTTCAACCACACGTGCGTCAAAACCAGAGCCACCACAGTCACCACTCCCAGCACGGCCATCACGACCCGGTCCCCGACCGGAAACCCGAACACGACGAGCTCGTCGTCGCGGGAGAAGTAGAAGAAGACCCAGGCGGCGAAGACGATGAGGAAGACGATGATGGAGACCGGGTGGTAGATGAGGCTGAGGAAGAGGACGACCAAGAGGACCATGGCGTAGTTGGACCGGAAATGGGTCAGGTTCTGGAAGAGCCGGGTCGTGGCGTCGGAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

4.35

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccII	CGCG	1 cut(s)	155
AciI	CCGC	2 cut(s)	155, 180
AcoI	YGGCCR	1 cut(s)	100
AcvI	CACGTG	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	278, 305
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	115, 253, 269
AsuC2I	CCSGG	3 cut(s)	113, 215, 300
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	3 cut(s)	115, 253, 269
BanII	GRGCYC	1 cut(s)	147
BbrPI	CACGTG	1 cut(s)	58
BbsI	GAAGAC	3 cut(s)	177, 192, 204
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	231
BccI	CCATC	2 cut(s)	111, 200
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	3 cut(s)	113, 215, 300
BcoDI	GTCTC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	4 cut(s)	113, 177, 215, 300
Bme18I	GGWCC	3 cut(s)	115, 253, 269
BmgT120I	GGNCC	3 cut(s)	115, 253, 269
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	4 cut(s)	113, 177, 215, 300
BpiI	GAAGAC	3 cut(s)	177, 192, 204
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	3 cut(s)	113, 215, 300
BsaAI	YACGTR	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	175, 256
BsaWI	WCCGGW	2 cut(s)	123, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 305
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	175, 256
BseLI	CCNNNNNNNGG	2 cut(s)	278, 305
BseMII	CTCAG	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	5 cut(s)	113, 124, 214, 272, 299
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	278, 305
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	2 cut(s)	155, 180
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	175, 256
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	2 cut(s)	231, 288
BstACI	GRCGYC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	4 cut(s)	111, 175, 213, 298
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	3 cut(s)	177, 192, 204
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr13I	GGNCC	3 cut(s)	115, 253, 269
CseI	GACGC	2 cut(s)	50, 298
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	75, 102, 145, 230, 298
CviKI_1	RGCY	5 cut(s)	75, 102, 145, 230, 298
DdeI	CTNAG	1 cut(s)	231
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	231, 288
EarI	CTCTTC	2 cut(s)	231, 288
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	3 cut(s)	115, 253, 269
Eco53kI	GAGCTC	1 cut(s)	145
Eco72I	CACGTG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	260
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	256
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	181
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	5 cut(s)	113, 124, 214, 272, 299
HgaI	GACGC	2 cut(s)	50, 298
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	260
HpaII	CCGG	5 cut(s)	113, 124, 214, 272, 299
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	107, 290
Hpy99I	CGWCG	6 cut(s)	44, 47, 143, 152, 155, 314
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	2 cut(s)	45, 57
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	45, 57
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	260
LguI	GCTCTTC	1 cut(s)	288
MaeII	ACGT	2 cut(s)	45, 57
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	6 cut(s)	179, 182, 197, 209, 248, 305
MhlI	GDGCHC	1 cut(s)	147
MmeI	TCCRAC	2 cut(s)	247, 292
MnlI	CCTC	6 cut(s)	187, 220, 226, 232, 244, 310
MspI	CCGG	5 cut(s)	113, 124, 214, 272, 299
MspR9I	CCNGG	4 cut(s)	113, 177, 215, 300
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	155
NciI	CCSGG	3 cut(s)	113, 215, 300
NcoI	CCATGG	1 cut(s)	256
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 144, 147
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	182
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
Ppu21I	YACGTR	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	175
PspCI	CACGTG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	115, 253, 269
PstNI	CAGNNNCTG	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	288
SatI	GCNGC	1 cut(s)	181
Sau96I	GGNCC	3 cut(s)	115, 253, 269
ScrFI	CCNGG	4 cut(s)	113, 177, 215, 300
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	5 cut(s)	48, 60, 147, 288, 321
SinI	GGWCC	3 cut(s)	115, 253, 269
SsiI	CCGC	2 cut(s)	155, 180
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	111, 175, 213, 298
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	2 cut(s)	48, 60
TauI	GCSGC	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	115, 253, 269
XcmI	CCANNNNNNNNNTGG	2 cut(s)	254, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.