Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Reverse (-)

51685031 .. 51686828

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCAACAGTTGCATCACTCGTAGCCAACTCAATTTTCTTGCGCAATCCTCACCCAAAGTTCAGCGCAGCAAAACTGAGCGCAACTTATGACAGTCGCCCTGCCTCTGTTTCTTTTTCTTCTGCTCCTAAATTCAATGTCGACCTTAGACTTAAGAGCTTCTTCTCCGCAGCGGAGAATAACCAGTACATAACCTCCACCGCCGACTCAAAAGTATTAGGGAGCCATGCCTCTCTTTGTAAGCCGCCTAATGCTATTAAAGTCACCTTGGTATTGGAAAACCACTTGGACGGATCGGTGGGAAGTGATCGACGAAGTATCCGTACGACCCTAAGTCGAGGAACCCTGGCGACTCGCCTTGGCAGTGGAGGTATTATGGACTCCTCAGGCATCGTCATGTTTGACCGCAACAAGTACTTGAACCTCCTCAGCTATCTTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.91

Weight (kDa)

10.0

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	5 cut(s)	168, 173, 201, 245, 406
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	3 cut(s)	188, 325, 416
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	136, 421
AhdI	GACNNNNNGTC	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	159, 432
AluI	AGCT	2 cut(s)	159, 432
AlwI	GGATC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	68, 170
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	3 cut(s)	45, 68, 83
AsuHPI	GGTGA	2 cut(s)	44, 256
AxyI	CCTNAGG	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	307, 339
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	80, 182
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	3 cut(s)	69, 171, 245
BlsI	GCNGC	3 cut(s)	70, 172, 246
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	347
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	224, 343
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	23, 399
Bpu10I	CCTNAGC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	267, 345, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse1I	ACTGG	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	267, 345, 358
BseMII	CTCAG	3 cut(s)	68, 399, 442
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	373, 416
BseXI	GCAGC	2 cut(s)	80, 182
BsiWI	CGTACG	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	293, 307
BspACI	CCGC	5 cut(s)	168, 173, 201, 245, 406
BspCNI	CTCAG	3 cut(s)	69, 398, 441
BspLI	GGNNCC	2 cut(s)	224, 343
BspPI	GGATC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	267, 345, 358
BssMI	GATC	2 cut(s)	293, 307
BssT1I	CCWWGG	2 cut(s)	267, 358
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	10, 95
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	5 cut(s)	77, 146, 332, 385, 428
BstHHI	GCGC	3 cut(s)	45, 68, 83
BstKTI	GATC	2 cut(s)	296, 310
BstMBI	GATC	2 cut(s)	293, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	80, 182
Bsu36I	CCTNAGG	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	329
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
CfoI	GCGC	3 cut(s)	45, 68, 83
Csp6I	GTAC	3 cut(s)	187, 324, 415
CviAII	CATG	2 cut(s)	227, 397
CviJI	RGCY	5 cut(s)	26, 159, 225, 244, 432
CviKI_1	RGCY	5 cut(s)	26, 159, 225, 244, 432
CviQI	GTAC	3 cut(s)	187, 324, 415
DdeI	CTNAG	5 cut(s)	77, 146, 332, 385, 428
DpnI	GATC	2 cut(s)	295, 309
DpnII	GATC	2 cut(s)	293, 307
DriI	GACNNNNNGTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	267, 358
Eco81I	CCTNAGG	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	267, 358
ErhI	CCWWGG	2 cut(s)	267, 358
FaeI	CATG	2 cut(s)	230, 400
FaiI	YATR	5 cut(s)	90, 191, 228, 377, 398
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	2 cut(s)	226, 396
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	69, 171, 245
Fsp4HI	GCNGC	3 cut(s)	69, 171, 245
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	3 cut(s)	44, 67, 82
GluI	GCNGC	3 cut(s)	69, 171, 245
HhaI	GCGC	3 cut(s)	45, 68, 83
Hin1II	CATG	2 cut(s)	230, 400
Hin6I	GCGC	3 cut(s)	43, 66, 81
HinP1I	GCGC	3 cut(s)	43, 66, 81
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	206, 352, 380
HphI	GGTGA	2 cut(s)	44, 256
Hpy166II	GTNNAC	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	315
HpyCH4III	ACNGT	2 cut(s)	10, 95
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	77, 146, 332, 385, 428
Hsp92II	CATG	2 cut(s)	230, 400
HspAI	GCGC	3 cut(s)	43, 66, 81
Kzo9I	GATC	2 cut(s)	293, 307
LmnI	GCTCC	2 cut(s)	130, 222
LpnPI	CCDG	5 cut(s)	114, 197, 332, 359, 372
Lsp1109I	GCAGC	2 cut(s)	80, 182
LweI	GCATC	2 cut(s)	23, 399
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	295, 309
MboI	GATC	2 cut(s)	293, 307
MboII	GAAGA	3 cut(s)	111, 154, 428
MluCI	AATT	2 cut(s)	33, 131
MlyI	GAGTC	3 cut(s)	200, 346, 374
MnlI	CCTC	9 cut(s)	60, 115, 205, 241, 332, 362, 394, 434, 437
MseI	TTAA	2 cut(s)	153, 258
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	293, 307
NlaIII	CATG	2 cut(s)	230, 400
NlaIV	GGNNCC	2 cut(s)	224, 343
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
Pfl23II	CGTACG	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	70, 172, 246
PleI	GAGTC	3 cut(s)	200, 346, 374
PpsI	GAGTC	3 cut(s)	200, 346, 374
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspLI	CGTACG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	224, 343
RsaI	GTAC	3 cut(s)	188, 325, 416
RsaNI	GTAC	3 cut(s)	187, 324, 415
RseI	CAYNNNNRTG	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	153, 258
SatI	GCNGC	3 cut(s)	69, 171, 245
Sau3AI	GATC	2 cut(s)	293, 307
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	3 cut(s)	200, 346, 374
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	7 cut(s)	147, 161, 197, 269, 373, 426, 434
SfaNI	GCATC	2 cut(s)	23, 399
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	33, 131
SsiI	CCGC	5 cut(s)	168, 173, 201, 245, 406
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	267, 358
TaaI	ACNGT	2 cut(s)	10, 95
TaqI	TCGA	3 cut(s)	141, 310, 337
TasI	AATT	2 cut(s)	33, 131
TatI	WGTACW	2 cut(s)	186, 414
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	153, 258
Tru9I	TTAA	2 cut(s)	153, 258
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	68, 170
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	2 cut(s)	306, 311
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.