Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Forward (+)

8730797 .. 8731045

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1103000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAAGACAATTCGATTTGGGTTCAGGCTGGCGCCACGCTCGGAGAATTGTACTATTGGATTTTGAAGACGAGGAAAGTCCACGGCTTTCCGACCCGTATTTGCCCCACGGTTGGTGTTGGCGGGCACATAAGCGGTGGTGGATATGGAAACATGTTGAGGAAGTACATCCTGGCTGTCAACAATGTCATTGATGATCGGACAGTTGATGTCAAGGGAAGGTTGGAGTTGCTGTGGGAAGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

83

Amino Acids

9.14

Weight (kDa)

6.71

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	3 - 75	3e-09	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	123, 135
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	53, 167
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	12, 74
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	12, 74
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	82, 108
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	82, 108
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	123, 135
BspLI	GGNNCC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	82, 108
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	112, 205
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	31, 125
BstDSI	CCRYGG	2 cut(s)	82, 108
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	2 cut(s)	12, 74
BtgI	CCRYGG	2 cut(s)	82, 108
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	31, 125
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	52, 166
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	3 cut(s)	29, 87, 176
CviKI_1	RGCY	3 cut(s)	29, 87, 176
CviQI	GTAC	2 cut(s)	52, 166
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	131, 147, 155
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	36
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	82, 181
Hpy188I	TCNGA	3 cut(s)	44, 93, 201
Hpy8I	GTNNAC	2 cut(s)	82, 181
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	112, 205
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	11, 15, 158, 185
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	17, 79
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	10, 47
Mly113I	GGCGCC	1 cut(s)	33
MmeI	TCCRAC	2 cut(s)	116, 204
MnlI	CCTC	2 cut(s)	66, 153
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	157
PciI	ACATGT	1 cut(s)	153
PluTI	GGCGCC	1 cut(s)	36
PscI	ACATGT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	53, 167
RsaNI	GTAC	2 cut(s)	52, 166
Sau3AI	GATC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	1 cut(s)	224
SfoI	GGCGCC	1 cut(s)	34
Sse9I	AATT	2 cut(s)	10, 47
SsiI	CCGC	2 cut(s)	123, 135
SspDI	GGCGCC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	112, 205
TaqI	TCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	10, 47
TatI	WGTACW	2 cut(s)	51, 165
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.