Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007961.1

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Reverse (-)

18178 .. 18574

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007961.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgttcatgaggttcgctgggactcttgcgaaaagtctcattttaatccaacctttgagtgggaggtttcacttggacggcgacaagagcgcttgggtcgaacccagtgctaccatcagagaaatttttactagaattgcggagaaaagtaacgtccatggtttttcggctgctgcttgccctagtgttggtgttggtggtcacttcagcgggggtggtcaatgggagaagacctattttgggccattaaaggaggtgctacgggaagctttagtgtcattttatcatggaagatcaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

100

Amino Acids

10.93

Weight (kDa)

9.36

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	140, 210
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	190
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	59, 188, 240
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	170, 173
ApoI	RAATTY	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	157, 160
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	132, 183
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	171, 174
BlsI	GCNGC	2 cut(s)	172, 175
BmgT120I	GGNCC	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 188, 240
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	3 cut(s)	59, 188, 240
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	157, 160
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	59, 188, 240
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	293
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	2 cut(s)	140, 210
BspANI	GGCC	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	157, 160
BstV2I	GAAGAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	242
CviAII	CATG	3 cut(s)	7, 158, 287
CviJI	RGCY	3 cut(s)	170, 244, 269
CviKI_1	RGCY	3 cut(s)	170, 244, 269
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	157
Eco47III	AGCGCT	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	10, 161, 290
FaiI	YATR	3 cut(s)	8, 159, 288
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	6, 157, 286
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	171, 174
Fsp4HI	GCNGC	2 cut(s)	171, 174
FspBI	CTAG	2 cut(s)	132, 183
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	171, 174
GsaI	CCCAGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	10, 161, 290
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	10, 161, 290
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	293
LpnPI	CCDG	2 cut(s)	3, 118
Lsp1109I	GCAGC	2 cut(s)	157, 160
MaeI	CTAG	2 cut(s)	132, 183
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	149, 200
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	2 cut(s)	241, 303
MluCI	AATT	3 cut(s)	123, 135, 298
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	3, 57, 247
MseI	TTAA	2 cut(s)	44, 248
MspA1I	CMGCKG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	10, 161, 290
NmuCI	GTSAC	1 cut(s)	200
PagI	TCATGA	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	172, 175
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	44, 248
SatI	GCNGC	2 cut(s)	171, 174
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	16
SetI	ASST	7 cut(s)	14, 55, 68, 156, 236, 258, 271
Sse9I	AATT	3 cut(s)	123, 135, 298
SsiI	CCGC	2 cut(s)	140, 210
SspMI	CTAG	2 cut(s)	132, 183
StyI	CCWWGG	1 cut(s)	157
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	123, 135, 298
Tru1I	TTAA	2 cut(s)	44, 248
Tru9I	TTAA	2 cut(s)	44, 248
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	170, 173
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XspI	CTAG	2 cut(s)	132, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.