RLG00000036951

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008854
Physical Location & Seq
Forward (+)
86808363 .. 86809929
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036951

Sequence Viewer

Length: 639 bp
ATGCCGCCGGGCTCCGGCGCACGAGTCAGGCCGTCTCCTACTCTGGCGCTCGACCCAGGCAGTCTCCGGCTCCGGCGCTCCACCCAGGCAGTCTACCTCTCTCCTCCAGACTCGGGCCGCCCACCACGGCGTCATCACCAGAGGAATCGATCTCGACGACTCTGTCCAGATCGGAGTCGACCTCGACGACTGGCTGGTCCTAATCCAGATCGGAAGAATGCTGAACCTGAAGGAAGTGAATCGGAGATTGGGGATGTTGACCAGGCTCCTTCGCCTCCTCCAGCCACCACTTCTCCACGGATCACAGCGCTGAATTCGAAGTCGACGACTTCTCCACCAACGATGACGGCGGTTCCACTCCCAAGTCCTCCTCCGCCGAGGCGATTCATCGAACACCTCGAGCTACAGGTCCACCGGGAGCTCGATCTCATTCCCTCAGATGCGGTGATTGACCTCCTCAACATCACAGAGCAGATGATCGCTGCCGGGTACTTGAGGGAGTGCATCCAGGTCTACGGCAGCGTAAATCAATTCTCTGGGTGCCCAAATCACTCTTTCGTTTTTGATTTTATGATCAGACTGTTATTGGATTCTAAGGCTTATTCATTTCTGGATAGATTGGATTTGACAGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

213

Amino Acids

23.58

Weight (kDa)

9.25

Isoelectric Point (pI)

79.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 162, 195
AccB1I GGYRCC 1 cut(s) 540
AccI GTMKAC 4 cut(s) 93, 178, 323, 513
AciI CCGC 5 cut(s) 5, 118, 350, 374, 443
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 130
AfaI GTAC 1 cut(s) 491
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 14, 113
AjnI CCWGG 4 cut(s) 55, 84, 261, 507
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 2 cut(s) 403, 421
AluI AGCT 2 cut(s) 403, 421
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 2 cut(s) 39, 68
AlwI GGATC 1 cut(s) 308
Ama87I CYCGRG 2 cut(s) 112, 398
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 2 cut(s) 29, 115
ApeKI GCWGC 2 cut(s) 482, 519
ApoI RAATTY 1 cut(s) 313
AspLEI GCGC 4 cut(s) 20, 49, 78, 310
AspS9I GGNCC 3 cut(s) 115, 197, 409
AsuC2I CCSGG 3 cut(s) 9, 416, 487
AsuHPI GGTGA 2 cut(s) 128, 457
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 2 cut(s) 112, 398
AvaII GGWCC 2 cut(s) 197, 409
BaeGI GKGCMC 1 cut(s) 545
BanI GGYRCC 1 cut(s) 540
BanII GRGCYC 2 cut(s) 14, 423
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 469, 531
BceAI ACGGC 4 cut(s) 16, 143, 363, 532
BciT130I CCWGG 4 cut(s) 57, 86, 263, 509
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 3 cut(s) 9, 416, 487
BcoDI GTCTC 2 cut(s) 39, 68
BfmI CTRYAG 1 cut(s) 404
BfoI RGCGCY 3 cut(s) 50, 79, 311
BisI GCNGC 4 cut(s) 5, 118, 483, 520
BlsI GCNGC 4 cut(s) 6, 119, 484, 521
Bme1390I CCNGG 7 cut(s) 9, 57, 86, 263, 416, 487, 509
Bme18I GGWCC 2 cut(s) 197, 409
BmeT110I CYCGRG 2 cut(s) 112, 398
BmgT120I GGNCC 3 cut(s) 115, 197, 409
BmiI GGNNCC 5 cut(s) 13, 71, 267, 354, 542
BmrFI CCNGG 7 cut(s) 9, 57, 86, 263, 416, 487, 509
BmsI GCATC 2 cut(s) 430, 513
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BpmI CTGGAG 2 cut(s) 90, 264
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 3 cut(s) 9, 416, 487
Bsa29I ATCGAT 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 130
BsaJI CCNNGG 5 cut(s) 55, 84, 125, 296, 377
BsaXI ACNNNNNCTCC 4 cut(s) 277, 307, 316, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 113
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 4 cut(s) 57, 86, 263, 509
BseCI ATCGAT 1 cut(s) 148
BseDI CCNNGG 5 cut(s) 55, 84, 125, 296, 377
BseGI GGATG 2 cut(s) 259, 504
BseLI CCNNNNNNNGG 2 cut(s) 14, 113
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 4 cut(s) 93, 267, 360, 446
BseSI GKGCMC 1 cut(s) 545
BseXI GCAGC 2 cut(s) 469, 531
BshFI GGCC 2 cut(s) 31, 117
BshNI GGYRCC 1 cut(s) 540
BshVI ATCGAT 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 2 cut(s) 112, 398
BsiSI CCGG 6 cut(s) 8, 15, 67, 73, 415, 486
BslI CCNNNNNNNGG 2 cut(s) 14, 113
BsmAI GTCTC 2 cut(s) 39, 68
BsmBI CGTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 31, 117
BsoBI CYCGRG 2 cut(s) 112, 398
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 14, 423, 545
Bsp143I GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
BspACI CCGC 5 cut(s) 5, 118, 350, 374, 443
BspANI GGCC 2 cut(s) 31, 117
BspCNI CTCAG 1 cut(s) 449
BspDI ATCGAT 1 cut(s) 148
BspLI GGNNCC 5 cut(s) 13, 71, 267, 354, 542
BspPI GGATC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 540
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 5 cut(s) 55, 84, 125, 296, 377
BssMI GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
BssNI GRCGYC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 4 cut(s) 57, 86, 263, 509
Bst4CI ACNGT 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 436, 594
BstDSI CCRYGG 2 cut(s) 125, 296
BstF5I GGATG 2 cut(s) 259, 504
BstH2I RGCGCY 3 cut(s) 50, 79, 311
BstHHI GCGC 4 cut(s) 20, 49, 78, 310
BstKTI GATC 7 cut(s) 152, 172, 211, 303, 427, 480, 576
BstMAI GTCTC 2 cut(s) 39, 68
BstMBI GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
BstNI CCWGG 4 cut(s) 57, 86, 263, 509
BstSCI CCNGG 7 cut(s) 7, 55, 84, 261, 414, 485, 507
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 469, 531
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 2 cut(s) 31, 117
BsuTUI ATCGAT 1 cut(s) 148
BtgI CCRYGG 2 cut(s) 125, 296
BtsCI GGATG 2 cut(s) 259, 504
CfoI GCGC 4 cut(s) 20, 49, 78, 310
Cfr13I GGNCC 3 cut(s) 115, 197, 409
ClaI ATCGAT 1 cut(s) 148
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 490
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 436, 594
DpnI GATC 7 cut(s) 151, 171, 210, 302, 426, 479, 575
DpnII GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
DrdI GACNNNNNNGTC 2 cut(s) 162, 195
DseDI GACNNNNNNGTC 2 cut(s) 162, 195
EciI GGCGGA 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 2 cut(s) 14, 423
Eco47I GGWCC 2 cut(s) 197, 409
Eco47III AGCGCT 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 112, 398
EcoICRI GAGCTC 1 cut(s) 421
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 4 cut(s) 55, 84, 261, 507
EcoT38I GRGCYC 2 cut(s) 14, 423
Esp3I CGTCTC 1 cut(s) 39
FaiI YATR 1 cut(s) 572
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 4 cut(s) 93, 178, 323, 513
Fnu4HI GCNGC 4 cut(s) 5, 118, 483, 520
FokI GGATG 2 cut(s) 266, 491
FriOI GRGCYC 2 cut(s) 14, 423
Fsp4HI GCNGC 4 cut(s) 5, 118, 483, 520
GlaI GCGC 4 cut(s) 19, 48, 77, 309
GluI GCNGC 4 cut(s) 5, 118, 483, 520
GsuI CTGGAG 2 cut(s) 90, 264
HaeII RGCGCY 3 cut(s) 50, 79, 311
HaeIII GGCC 2 cut(s) 31, 117
HapII CCGG 6 cut(s) 8, 15, 67, 73, 415, 486
HgaI GACGC 1 cut(s) 119
HhaI GCGC 4 cut(s) 20, 49, 78, 310
Hin1I GRCGYC 1 cut(s) 130
Hin6I GCGC 4 cut(s) 18, 47, 76, 308
HinP1I GCGC 4 cut(s) 18, 47, 76, 308
HincII GTYRAC 3 cut(s) 179, 259, 324
HindII GTYRAC 3 cut(s) 179, 259, 324
HinfI GANTC 8 cut(s) 24, 110, 145, 159, 175, 239, 384, 590
HpaII CCGG 6 cut(s) 8, 15, 67, 73, 415, 486
HphI GGTGA 2 cut(s) 128, 457
Hpy166II GTNNAC 6 cut(s) 94, 179, 259, 324, 412, 514
Hpy188I TCNGA 5 cut(s) 174, 213, 244, 439, 578
Hpy188III TCNNGA 5 cut(s) 107, 153, 167, 206, 611
Hpy8I GTNNAC 6 cut(s) 94, 179, 259, 324, 412, 514
Hpy99I CGWCG 3 cut(s) 159, 189, 328
HpyAV CCTTC 2 cut(s) 224, 279
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4V TGCA 1 cut(s) 504
HpyF3I CTNAG 2 cut(s) 436, 594
Hsp92I GRCGYC 1 cut(s) 130
HspAI GCGC 4 cut(s) 18, 47, 76, 308
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
LmnI GCTCC 5 cut(s) 17, 75, 83, 271, 418
Lsp1109I GCAGC 2 cut(s) 469, 531
LweI GCATC 2 cut(s) 430, 513
MalI GATC 7 cut(s) 151, 171, 210, 302, 426, 479, 575
MboI GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 3 cut(s) 14, 423, 545
MluCI AATT 2 cut(s) 313, 530
MlyI GAGTC 4 cut(s) 33, 104, 153, 184
MspI CCGG 6 cut(s) 8, 15, 67, 73, 415, 486
MspR9I CCNGG 7 cut(s) 9, 57, 86, 263, 416, 487, 509
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 4 cut(s) 57, 86, 263, 509
NciI CCSGG 3 cut(s) 9, 416, 487
NdeII GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
NlaIV GGNNCC 5 cut(s) 13, 71, 267, 354, 542
NmeAIII GCCGAG 1 cut(s) 402
NspV TTCGAA 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 398
PcsI WCGNNNNNNNCGW 4 cut(s) 154, 184, 323, 396
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 145, 239, 384, 590
PflFI GACNNNGTC 1 cut(s) 162
PkrI GCNGC 4 cut(s) 6, 119, 484, 521
PleI GAGTC 4 cut(s) 32, 104, 153, 183
PpsI GAGTC 4 cut(s) 32, 104, 153, 183
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 4 cut(s) 55, 84, 261, 507
PspGI CCWGG 4 cut(s) 55, 84, 261, 507
PspN4I GGNNCC 5 cut(s) 13, 71, 267, 354, 542
PspPI GGNCC 3 cut(s) 115, 197, 409
PspXI VCTCGAGB 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 162
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SacI GAGCTC 1 cut(s) 423
SalI GTCGAC 2 cut(s) 177, 322
SatI GCNGC 4 cut(s) 5, 118, 483, 520
Sau3AI GATC 7 cut(s) 149, 169, 208, 300, 424, 477, 573
Sau96I GGNCC 3 cut(s) 115, 197, 409
SchI GAGTC 4 cut(s) 33, 104, 153, 184
ScrFI CCNGG 7 cut(s) 9, 57, 86, 263, 416, 487, 509
SduI GDGCHC 3 cut(s) 14, 423, 545
SetI ASST 9 cut(s) 99, 184, 229, 399, 405, 411, 423, 456, 513
SfaNI GCATC 2 cut(s) 430, 513
SfcI CTRYAG 1 cut(s) 404
Sfr274I CTCGAG 1 cut(s) 398
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 2 cut(s) 197, 409
SlaI CTCGAG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 398, 493
SmoI CTYRAG 2 cut(s) 398, 493
Sse9I AATT 2 cut(s) 313, 530
SsiI CCGC 5 cut(s) 5, 118, 350, 374, 443
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 7 cut(s) 7, 55, 84, 261, 414, 485, 507
TaaI ACNGT 1 cut(s) 582
TasI AATT 2 cut(s) 313, 530
TauI GCSGC 2 cut(s) 7, 120
TfiI GAWTC 4 cut(s) 145, 239, 384, 590
TseI GCWGC 2 cut(s) 482, 519
TspDTI ATGAA 2 cut(s) 376, 594
TspGWI ACGGA 1 cut(s) 313
Tth111I GACNNNGTC 1 cut(s) 162
VpaK11BI GGWCC 2 cut(s) 197, 409
XapI RAATTY 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 398
XmiI GTMKAC 4 cut(s) 93, 178, 323, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.