Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Forward (+)

12901650 .. 12902099

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007034

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCAACAGTTGCATCACTCGTATCCAACTCAATTTTCTTGCGCAATCCTCACCCAATGTACTGCGCATCAAAACTGAGCGCAACTTATAACAGTCGCCATGCCTCTGTTTCTCTTTCTTCTGCTCCTAAATTCAATGTTGACCTTAGACTTAAGAGCTTCTTCTCCGCAGCGGAGAATAACCAGTACATAACCACCACCTCCGACTCAAAAGTATTAGGGAGCCATGCCTTTCTTTGTAAGCCTCCTAATGCTATTAAAGATCACCTTGGTATTGGAAAACCACTTGGACGGATCGGTGGGAAGTGGTCGACGAAATATCCGTACGATCCTAAGTCGAGGAACCCTAGCGCGCGACTCGCCTTGGTATGTGGTTCATGCATACATCTTCTTCTTTCTTCTTCTCGCACCGTTTGTCTGCGCTGCTGTTGGTTTGCCTATTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.3

Weight (kDa)

9.77

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc16I	TGCGCA	2 cut(s)	44, 67
AccI	GTMKAC	1 cut(s)	311
AccII	CGCG	2 cut(s)	353, 355
AciI	CCGC	2 cut(s)	168, 173
AclWI	GGATC	2 cut(s)	302, 323
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	3 cut(s)	62, 188, 326
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AlwI	GGATC	2 cut(s)	302, 323
ApeKI	GCWGC	2 cut(s)	170, 423
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	6 cut(s)	45, 68, 83, 353, 355, 423
AsuHPI	GGTGA	2 cut(s)	44, 257
BbvI	GCAGC	2 cut(s)	182, 410
BciVI	GTATCC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	171, 424
BlsI	GCNGC	2 cut(s)	172, 425
BmiI	GGNNCC	2 cut(s)	224, 344
BmsI	GCATC	2 cut(s)	23, 77
BsaJI	CCNNGG	2 cut(s)	268, 363
Bse1I	ACTGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	268, 363
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	184
BsePI	GCGCGC	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	182, 410
Bsh1236I	CGCG	2 cut(s)	353, 355
BsiWI	CGTACG	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	262, 294, 328
BspACI	CCGC	2 cut(s)	168, 173
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	353, 355
BspLI	GGNNCC	2 cut(s)	224, 344
BspPI	GGATC	2 cut(s)	302, 323
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	268, 363
BssHII	GCGCGC	1 cut(s)	351
BssMI	GATC	3 cut(s)	262, 294, 328
BssT1I	CCWWGG	2 cut(s)	268, 363
Bst4CI	ACNGT	3 cut(s)	10, 95, 412
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	3 cut(s)	77, 146, 333
BstFNI	CGCG	2 cut(s)	353, 355
BstHHI	GCGC	6 cut(s)	45, 68, 83, 353, 355, 423
BstKTI	GATC	3 cut(s)	265, 297, 331
BstMBI	GATC	3 cut(s)	262, 294, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 359
BstUI	CGCG	2 cut(s)	353, 355
BstV1I	GCAGC	2 cut(s)	182, 410
BsuI	GTATCC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	6 cut(s)	45, 68, 83, 353, 355, 423
Csp6I	GTAC	3 cut(s)	61, 187, 325
CviAII	CATG	3 cut(s)	101, 227, 378
CviJI	RGCY	3 cut(s)	159, 225, 244
CviKI_1	RGCY	3 cut(s)	159, 225, 244
CviQI	GTAC	3 cut(s)	61, 187, 325
DdeI	CTNAG	3 cut(s)	77, 146, 333
DpnI	GATC	3 cut(s)	264, 296, 330
DpnII	GATC	3 cut(s)	262, 294, 328
Eco130I	CCWWGG	2 cut(s)	268, 363
EcoT14I	CCWWGG	2 cut(s)	268, 363
EcoT22I	ATGCAT	1 cut(s)	383
ErhI	CCWWGG	2 cut(s)	268, 363
FaeI	CATG	3 cut(s)	104, 230, 381
FaiI	YATR	7 cut(s)	90, 102, 191, 228, 370, 379, 383
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 252, 284
FatI	CATG	3 cut(s)	100, 226, 377
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	2 cut(s)	171, 424
Fsp4HI	GCNGC	2 cut(s)	171, 424
FspBI	CTAG	1 cut(s)	348
FspI	TGCGCA	2 cut(s)	44, 67
GlaI	GCGC	6 cut(s)	44, 67, 82, 352, 354, 422
GluI	GCNGC	2 cut(s)	171, 424
HhaI	GCGC	6 cut(s)	45, 68, 83, 353, 355, 423
Hin1II	CATG	3 cut(s)	104, 230, 381
Hin6I	GCGC	6 cut(s)	43, 66, 81, 351, 353, 421
HinP1I	GCGC	6 cut(s)	43, 66, 81, 351, 353, 421
HincII	GTYRAC	2 cut(s)	142, 312
HindII	GTYRAC	2 cut(s)	142, 312
HinfI	GANTC	2 cut(s)	206, 357
HphI	GGTGA	2 cut(s)	44, 257
Hpy166II	GTNNAC	2 cut(s)	142, 312
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	142, 312
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4III	ACNGT	3 cut(s)	10, 95, 412
HpyCH4V	TGCA	2 cut(s)	14, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 359
HpyF3I	CTNAG	3 cut(s)	77, 146, 333
Hsp92II	CATG	3 cut(s)	104, 230, 381
HspAI	GCGC	6 cut(s)	43, 66, 81, 351, 353, 421
Kzo9I	GATC	3 cut(s)	262, 294, 328
LmnI	GCTCC	2 cut(s)	130, 222
LpnPI	CCDG	1 cut(s)	197
Lsp1109I	GCAGC	2 cut(s)	182, 410
LweI	GCATC	2 cut(s)	23, 77
MaeI	CTAG	1 cut(s)	348
MalI	GATC	3 cut(s)	264, 296, 330
MboI	GATC	3 cut(s)	262, 294, 328
MboII	GAAGA	6 cut(s)	111, 154, 380, 383, 390, 393
MluCI	AATT	2 cut(s)	33, 131
MlyI	GAGTC	2 cut(s)	200, 351
MmeI	TCCRAC	2 cut(s)	51, 228
MnlI	CCTC	5 cut(s)	60, 115, 211, 255, 333
Mph1103I	ATGCAT	1 cut(s)	383
MseI	TTAA	2 cut(s)	153, 258
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	152
MvnI	CGCG	2 cut(s)	353, 355
MwoI	GCNNNNNNNGC	2 cut(s)	11, 359
NdeII	GATC	3 cut(s)	262, 294, 328
NlaIII	CATG	3 cut(s)	104, 230, 381
NlaIV	GGNNCC	2 cut(s)	224, 344
NsbI	TGCGCA	2 cut(s)	44, 67
NsiI	ATGCAT	1 cut(s)	383
PauI	GCGCGC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
Pfl23II	CGTACG	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	172, 425
PleI	GAGTC	2 cut(s)	200, 351
PpsI	GAGTC	2 cut(s)	200, 351
PsiI	TTATAA	1 cut(s)	90
PspLI	CGTACG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	224, 344
PteI	GCGCGC	1 cut(s)	351
RsaI	GTAC	3 cut(s)	62, 188, 326
RsaNI	GTAC	3 cut(s)	61, 187, 325
SalI	GTCGAC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	153, 258
SatI	GCNGC	2 cut(s)	171, 424
Sau3AI	GATC	3 cut(s)	262, 294, 328
SchI	GAGTC	2 cut(s)	200, 351
SetI	ASST	4 cut(s)	147, 161, 203, 270
SfaNI	GCATC	2 cut(s)	23, 77
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	33, 131
SsiI	CCGC	2 cut(s)	168, 173
SspMI	CTAG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	268, 363
TaaI	ACNGT	3 cut(s)	10, 95, 412
TaqI	TCGA	2 cut(s)	311, 338
TasI	AATT	2 cut(s)	33, 131
TatI	WGTACW	2 cut(s)	60, 186
Tru1I	TTAA	2 cut(s)	153, 258
Tru9I	TTAA	2 cut(s)	153, 258
TseI	GCWGC	2 cut(s)	170, 423
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	2 cut(s)	307, 312
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.