Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7995666.1

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 523

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7995666.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 523 bp

atcagaagcggcggacacgactacgagggcatctcatacgtctcgtccgaaccgactttcgtaatcctcgacctgttcaacctccggtcaatcgacgtcaacgccgaggacgccaccgcgtgggcccaggccggcgcgactctcggagagttgtactatcgaatctccgagaagagtaaaacgctcgggtttgccgctgggatttgccccactgtcggtgttggtggacacatcagcggcggcggttatggaaacttgttgaggaagtacggcctcgccgtcgataatgtattggacgcattgattgttgatgtgaacgggaagcttctggatagaaaagcaatgggggaggatctgttttgggctatcagaggcggcggtggaggaagctttggagtgatcatatcctataaattgaagttggttcctgtgccggaaacgtttacggttttccgggtgatgagttacacagaaggtaatgcaaccgacgtcgttttgaggtggcaggaggtggcgccgacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

174

Amino Acids

18.62

Weight (kDa)

5.15

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	99, 492
AccB1I	GGYRCC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccII	CGCG	2 cut(s)	119, 137
AciI	CCGC	9 cut(s)	9, 12, 117, 195, 237, 240, 243, 375, 378
AclI	AACGTT	1 cut(s)	440
AclWI	GGATC	1 cut(s)	360
AcyI	GRCGYC	4 cut(s)	96, 111, 489, 515
AdeI	CACNNNGTG	1 cut(s)	120
AfaI	GTAC	2 cut(s)	155, 269
AfiI	CCNNNNNNNGG	2 cut(s)	120, 215
AgsI	TTSAA	2 cut(s)	79, 418
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	325, 390
AluI	AGCT	2 cut(s)	325, 390
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	123, 129, 271
ApaI	GGGCCC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	137, 517
AspS9I	GGNCC	2 cut(s)	123, 124
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	127
BceAI	ACGGC	2 cut(s)	263, 286
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	518
BisI	GCNGC	5 cut(s)	10, 195, 238, 241, 376
BlsI	GCNGC	5 cut(s)	11, 196, 239, 242, 377
Bme1390I	CCNGG	2 cut(s)	128, 455
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	123, 124
BmiI	GGNNCC	3 cut(s)	125, 426, 516
BmrFI	CCNGG	2 cut(s)	128, 455
BmsI	GCATC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	455
BsaHI	GRCGYC	4 cut(s)	96, 111, 489, 515
BsaJI	CCNNGG	2 cut(s)	105, 126
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 215
Bse118I	RCCGGY	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	105, 126
BseLI	CCNNNNNNNGG	2 cut(s)	120, 215
BseMI	GCAATG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	2 cut(s)	119, 137
BshFI	GGCC	3 cut(s)	125, 131, 273
BshNI	GGYRCC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	4 cut(s)	85, 132, 434, 454
BslI	CCNNNNNNNGG	2 cut(s)	120, 215
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	125, 131, 273
BsoBI	CYCGRG	1 cut(s)	185
Bsp120I	GGGCCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	352, 399
BspACI	CCGC	9 cut(s)	9, 12, 117, 195, 237, 240, 243, 375, 378
BspANI	GGCC	3 cut(s)	125, 131, 273
BspFNI	CGCG	2 cut(s)	119, 137
BspLI	GGNNCC	3 cut(s)	125, 426, 516
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	105, 126
BssMI	GATC	2 cut(s)	352, 399
BssNI	GRCGYC	4 cut(s)	96, 111, 489, 515
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	214, 448
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	4 cut(s)	96, 111, 489, 515
BstC8I	GCNNGC	1 cut(s)	133
BstFNI	CGCG	2 cut(s)	119, 137
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	137, 517
BstKTI	GATC	2 cut(s)	355, 402
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	352, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	126, 453
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	2 cut(s)	119, 137
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	125, 131, 273
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	137, 517
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	123, 124
CseI	GACGC	2 cut(s)	119, 305
Csp6I	GTAC	2 cut(s)	154, 268
CviJI	RGCY	6 cut(s)	125, 131, 273, 325, 365, 390
CviKI_1	RGCY	6 cut(s)	125, 131, 273, 325, 365, 390
CviQI	GTAC	2 cut(s)	154, 268
DinI	GGCGCC	1 cut(s)	516
DpnI	GATC	2 cut(s)	354, 401
DpnII	GATC	2 cut(s)	352, 399
DraIII	CACNNNGTG	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	46
FaiI	YATR	4 cut(s)	37, 249, 404, 411
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	10, 195, 238, 241, 376
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	5 cut(s)	10, 195, 238, 241, 376
GlaI	GCGC	2 cut(s)	136, 516
GluI	GCNGC	5 cut(s)	10, 195, 238, 241, 376
GsaI	CCCAGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	125, 131, 273
HapII	CCGG	4 cut(s)	85, 132, 434, 454
HgaI	GACGC	2 cut(s)	119, 305
HhaI	GCGC	2 cut(s)	137, 517
Hin1I	GRCGYC	4 cut(s)	96, 111, 489, 515
Hin6I	GCGC	2 cut(s)	135, 515
HinP1I	GCGC	2 cut(s)	135, 515
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	323, 388
HinfI	GANTC	2 cut(s)	139, 162
HpaII	CCGG	4 cut(s)	85, 132, 434, 454
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	100, 227, 316, 444
Hpy188I	TCNGA	5 cut(s)	5, 49, 146, 169, 371
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	4 cut(s)	100, 227, 316, 444
Hpy99I	CGWCG	4 cut(s)	98, 284, 491, 494
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	214, 448
HpyCH4IV	ACGT	4 cut(s)	39, 96, 440, 489
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	4 cut(s)	39, 96, 440, 489
Hsp92I	GRCGYC	4 cut(s)	96, 111, 489, 515
HspAI	GCGC	2 cut(s)	135, 515
KasI	GGCGCC	1 cut(s)	514
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	352, 399
LweI	GCATC	1 cut(s)	39
MaeII	ACGT	4 cut(s)	39, 96, 440, 489
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	2 cut(s)	354, 401
MboI	GATC	2 cut(s)	352, 399
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	413
Mly113I	GGCGCC	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	197, 237
MspI	CCGG	4 cut(s)	85, 132, 434, 454
MspR9I	CCNGG	2 cut(s)	128, 455
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	119, 137
MwoI	GCNNNNNNNGC	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	352, 399
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	3 cut(s)	125, 426, 516
NmeAIII	GCCGAG	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	5 cut(s)	45, 50, 66, 102, 276
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	5 cut(s)	11, 196, 239, 242, 377
PleI	GAGTC	1 cut(s)	133
PluTI	GGCGCC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	125, 426, 516
PspOMI	GGGCCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	123, 124
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	155, 269
RsaNI	GTAC	2 cut(s)	154, 268
SatI	GCNGC	5 cut(s)	10, 195, 238, 241, 376
Sau3AI	GATC	2 cut(s)	352, 399
Sau96I	GGNCC	2 cut(s)	123, 124
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	128, 455
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	516
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	9 cut(s)	9, 12, 117, 195, 237, 240, 243, 375, 378
SspDI	GGCGCC	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	126, 453
TaaI	ACNGT	2 cut(s)	214, 448
TaiI	ACGT	4 cut(s)	42, 99, 443, 492
TaqI	TCGA	4 cut(s)	69, 93, 160, 282
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	5 cut(s)	12, 197, 240, 243, 378
TfiI	GAWTC	1 cut(s)	162
TscAI	CASTG	1 cut(s)	217
TspRI	CASTG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	120
ZraI	GACGTC	2 cut(s)	97, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.