Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008854

Physical Location & Seq

Genomic Coordinates Forward (+)

10313745 .. 10314759

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACCATTTTGCCCTCAGCCCAATTAAACAATTACAACCATTGCCACTCAACACCAATCTCTCACACATCCCGATCTCTCTCTCCTCTCTCTATGCCCCTCCCTCTCTCCCTACTGACCTCCGGCTCCGGCGCACGACCCAGGCGCTCTCTCCCCTCCGGCGCTGGACCCAGGCCGTCTCCCTTTCCTCCAGACTCAGGCCGCCCACCACGGCTTCGTCACCGGAGGAATCGACCTCGACGACTCTGTCCAGATTGGAGTCGACCTCGACAACTGGCTGGTCCTAGTCTAGCACCACTTCACCGTCGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.51

Weight (kDa)

12.0

Isoelectric Point (pI)

100.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008854)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25820 FvH4_4g23501
malus_domestica	MD08G1103000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0413291
rosa_laevigata	RLG00000004394 RLG00000007028 RLG00000007034 RLG00000016156 RLG00000021265 RLG00000025261 RLG00000036133 RLG00000036951
rosa_multiflora	Rmu_co7995666.1_g000001 Rmu_sc0007362.1_g000024 Rmu_sc0007961.1_g000009
rosa_roxburghii	Rroxscaffold_1G00010760
rosa_samantha	Rh3AG242800 Rh4BG023000 Rh4DG049800 Rh4DG298800 Rh7AG129200 Rh7BG462200
rosa_wichuraiana	Rw4G025560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	140, 170
Alw26I	GTCTC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	173, 199
AspLEI	GCGC	3 cut(s)	134, 147, 164
AspS9I	GGNCC	2 cut(s)	167, 281
AsuHPI	GGTGA	2 cut(s)	212, 293
AvaII	GGWCC	2 cut(s)	167, 281
BbvCI	CCTCAGC	1 cut(s)	16
BceAI	ACGGC	2 cut(s)	160, 227
BciT130I	CCWGG	2 cut(s)	142, 172
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	285, 290
BfoI	RGCGCY	2 cut(s)	148, 165
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	142, 172
Bme18I	GGWCC	2 cut(s)	167, 281
BmgT120I	GGNCC	2 cut(s)	167, 281
BmiI	GGNNCC	2 cut(s)	127, 169
BmrFI	CCNGG	2 cut(s)	142, 172
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	140, 170, 209
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	142, 172
BseDI	CCNNGG	3 cut(s)	140, 170, 209
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	30, 210
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	175, 201
BsiSI	CCGG	4 cut(s)	123, 129, 159, 223
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	183
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	175, 201
Bsp143I	GATC	2 cut(s)	74, 308
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	175, 201
BspCNI	CTCAG	2 cut(s)	29, 209
BspLI	GGNNCC	2 cut(s)	127, 169
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	140, 170, 209
BssMI	GATC	2 cut(s)	74, 308
Bst2UI	CCWGG	2 cut(s)	142, 172
Bst4CI	ACNGT	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	16, 196
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	68
BstH2I	RGCGCY	2 cut(s)	148, 165
BstHHI	GCGC	3 cut(s)	134, 147, 164
BstKTI	GATC	2 cut(s)	77, 311
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	74, 308
BstNI	CCWGG	2 cut(s)	142, 172
BstSCI	CCNGG	2 cut(s)	140, 170
BsuRI	GGCC	2 cut(s)	175, 201
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	68
CfoI	GCGC	3 cut(s)	134, 147, 164
Cfr13I	GGNCC	2 cut(s)	167, 281
CviJI	RGCY	6 cut(s)	20, 126, 175, 201, 214, 278
CviKI_1	RGCY	6 cut(s)	20, 126, 175, 201, 214, 278
DdeI	CTNAG	2 cut(s)	16, 196
DpnI	GATC	2 cut(s)	76, 310
DpnII	GATC	2 cut(s)	74, 308
DrdI	GACNNNNNNGTC	1 cut(s)	246
DseDI	GACNNNNNNGTC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	167, 281
EcoRII	CCWGG	2 cut(s)	140, 170
Esp3I	CGTCTC	1 cut(s)	183
FaiI	YATR	2 cut(s)	95, 313
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	2 cut(s)	285, 290
GlaI	GCGC	3 cut(s)	133, 146, 163
GluI	GCNGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	2 cut(s)	148, 165
HaeIII	GGCC	2 cut(s)	175, 201
HapII	CCGG	4 cut(s)	123, 129, 159, 223
HhaI	GCGC	3 cut(s)	134, 147, 164
Hin6I	GCGC	3 cut(s)	132, 145, 162
HinP1I	GCGC	3 cut(s)	132, 145, 162
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HinfI	GANTC	4 cut(s)	194, 229, 243, 259
HpaII	CCGG	4 cut(s)	123, 129, 159, 223
HphI	GGTGA	2 cut(s)	212, 293
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188III	TCNNGA	3 cut(s)	72, 191, 251
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	2 cut(s)	243, 309
HpyCH4III	ACNGT	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	16, 196
HspAI	GCGC	3 cut(s)	132, 145, 162
Kzo9I	GATC	2 cut(s)	74, 308
LmnI	GCTCC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	285, 290
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	76, 310
MboI	GATC	2 cut(s)	74, 308
MluCI	AATT	2 cut(s)	23, 31
MlyI	GAGTC	3 cut(s)	188, 237, 268
MseI	TTAA	1 cut(s)	26
MspI	CCGG	4 cut(s)	123, 129, 159, 223
MspR9I	CCNGG	2 cut(s)	142, 172
MvaI	CCWGG	2 cut(s)	142, 172
NdeII	GATC	2 cut(s)	74, 308
NlaIV	GGNNCC	2 cut(s)	127, 169
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	3 cut(s)	188, 237, 267
PpsI	GAGTC	3 cut(s)	188, 237, 267
Psp6I	CCWGG	2 cut(s)	140, 170
PspGI	CCWGG	2 cut(s)	140, 170
PspN4I	GGNNCC	2 cut(s)	127, 169
PspPI	GGNCC	2 cut(s)	167, 281
PsyI	GACNNNGTC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	2 cut(s)	74, 308
Sau96I	GGNCC	2 cut(s)	167, 281
SchI	GAGTC	3 cut(s)	188, 237, 268
ScrFI	CCNGG	2 cut(s)	142, 172
SetI	ASST	3 cut(s)	122, 238, 268
SinI	GGWCC	2 cut(s)	167, 281
Sse9I	AATT	2 cut(s)	23, 31
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	2 cut(s)	285, 290
StyD4I	CCNGG	2 cut(s)	140, 170
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	5 cut(s)	232, 238, 262, 268, 307
TasI	AATT	2 cut(s)	23, 31
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
Tth111I	GACNNNGTC	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	167, 281
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	2 cut(s)	285, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.