Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Reverse (-)

29792124 .. 29808633

Gene Structure 16510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34290.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4173 bp

ATGATGAAAAAAGTCCATGCCAAAACAATAGCCTTCACAAAAGAGCCTTTCATTGAAGAAGAAGGGCACTGCAGAATAGCACAATGGCAATTCAATGCTATGTCCCAATCAGAAATCAGCAAAATGGCTGCAACTCAAATTTTTCTAGGTCGATATTACGATAGCAATCAAAAACCGATCAGAGGTGGCTTGTTGGATGCCCGCTTGGGCCCTGCAAATAAGCAATGTGGTGACTGTGAGACTTGTGGTGCAAAACTGTCAGATTGTCCTGGTCACTTTGGATATTTGGTGCTTGCTGTCCCTGTTTTTAATGTTGGATATTTAAGTACCGTTGTGGACGTTTTGAAGTGCATTTGTAAGTCATGCTCTCGAATAATTTTGGATGACAAATCACGCAGTCGCTTTTTGAATGTTGTGAGAGACCCCAAAAAGGATAAAAGTGTGACGATGAAATTGATAGTGAAGAAGTGTACTAGCATGTCAAGCAATAATAGATCAGTGAAGTGCCCAAAATGTGGATATATGAATGGTTCAGTGAAAAGGGCTCAAGGTATGCTGGCAATTGTTCATGGTGCTGTTGATGACTTTAAATCAGTGAATCCTGTCATGAAGGATCCCAAGGCATCCATTAATCTGCAACCTCATATGCTTAACCCTGTTAAAGTTTTTTCTTTGTTCAAAAGGATGCTTGATGAGGATTGTGAACTTCTTAATCTTAAAAGTAGACCAGAGAACCTTATCATGACAACCATTGCTGTGCCACCTATAGCCATTCGTCCTTCCGTTCTTGTGGATGGATCACAGAGTAATGAAAATGACATTACAGAGAGGTTAAAGAAAATTATTCAAACAAATGCCTGTGTTCAACAGGACCTATCAGAAGGATCTACCACAAGATTTTTGTCAAATTGGGAAATACTTCAAGCCGAGGTTGCGCTGTACATAAACAGTGATGTTCGCGGTGTGCCCTATCACATGACAGCAAATGCCAAGCCATTGAATGGATTGGTGCAGCGCCTCAAAGGGAAGACGGGGCGTTTTCGTGGAAACCTATGTGGGAAGAGGGTTGAATATACTGGCAGAACTGTTATTTCGCCTGACCCTAATCTGAAAATTACTGAGGTTGGAATCCCTATCCAAATGGCCCAGATTTTAAGTTATCCAGAACGCGTGTCCGATCATAATATTGAGAAGTTGAGGCGGTGTGTAGCTAATGGACCTTTTAAGTACCCTGGTGCCCTAGTGCTCAAATGTCAAAATGGCGAAGAATGGTCCTTGAAGGCTGGGCAAAAAAGGATGTCTCATGCTGATAATCTCAAACCCGGGGACATAGTCGATCGCCACTTAGAAGATGGGGACATTGTTCTTTTCAACAGACAACCAAGCTTACATCGGATGTCTATCATGTGTCATAGGGCAAGGATTATGCCTTGGAGAACATTGAGGTTTAATGAATCTGTATGCAACCCTTATAATGCTGATTTTGATGGTGACGAAATGAATATGCATGTGCCGCAAACGGAGGAGGCTCGAACTGAGGCTGTTATGTTGATGGGGGTGCAAAACAATCTATGCACTCCCAAAAATGGGGAGATTTTGGTTGCTTCCACTCAAGATTTTTTGACATCGTCTTTCCTTATAACAAGGAAGGACACATTTTATGATCGTGCATCTTTTTCACTCATGTGTTCATACATGGGGGATGGTACTGAGCATGTGGATTTGCCAACACCTGCTGTAGTTAAGCCAATAGAGCTATGGACAGGAAAGCAGCTATATAGCGTGTTAGTTCGCCCGAATTCAAATGTCAGAGTATATCTAAACCTAACTGTTAGAGAGAAATCCTACTCCAACAGAAAGACTGAAGATGGAAGAGAAATAGAAGCAATGTGCCCAAATGATGGGTTTGTCTATTTCCGTAACAGTGAGCTATTATCTGGGCAACTTGGGAAGGGCACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTTCTTCTCAGAGACTACAAAGCTCATGCTGCTGCTTCTTGCATGAATCGTGTAGCTAAATTAAGTGCCCGGTGGATCGGTAATCACGGATTCTCAATTGGGATTAGTGATGTACAACCCAGTGACATCTTGTATGGAGAGAAAGAAAAAATCATTAAGAAAGGTTATGACAAATGTGACGACCAGATTAAGTTGTACAAAGAAGGACAGCTACGACTTGCACCTGGTTGTGATGCTGCCCAATCACTTGAATCTGGGATTACTGCAGTTTTAAATGATATTCGAGACCAAACTGGAAAGTTGTGCATGCAAACGCTACATTGGAGAAACAGTCCCCTGATTATGTCCCAGTGTGGTTCCAAGGGATCTGCTATCAATATCAGTCAGATGGTTGCGTGTGTTGGTCAACAATCAGTTGGTGGTCGTCGTGCACCAAATGGGTTCATAGATCGAAGCCTTCCTCACTTTCCTAGAAAAGTGAATACCCCTGCAGCTAAAGGCTTTGTTGCTAGTTCCTTTTACAGTGGCTTGACAGCAACAGAGTTCTTTTTTCATACAATGGGAGGTCGAGAAGGCCTTGTGGATACAGCTGTCAAAACTGCTGATACAGGGTACATGTCTCGTAGGTTGTCAAAAGTTCTAGAGGACCTCTCTGTTCAGTATGATAAAACAGTGCGGGCCGCAAATGGAGGTATTGTTCAGTTTTGTTATGGAGATGACGGTATGGATCCTGCAATGATGGAAGGGAAAAGTGGAGCGCCGTTAGACTTCTACCGGTTGTTTTTCAGAGCCAAGGCCACTTGCCCTGCTGGAGAAAGCGAAAGCCTTTCTCCTGATGAAGTGTCTGAAATAGTGAGAAGCAGGCTTTCGGAACAAGATATGACTCCTGATGGTGGTTGCTCTATGGGTTTTAAAAGTTCTATAGAGCAATTCCTGGATGAATATGTTAAAGCATTAAGAAAAACACAGGAGGCTTTTTTATTGAATCAAAGTCCTGGTTGGGAGGTGAAGTCTGCAACTCTACAGAACATCGTCCAAAATATATCTGGTGTCACTCCTAGACAGCTGAAGGTTTTTCTAGATACTTGTATTTCTCGTTATCATTCAAAAAAAGTTGATGCTGGTACAGCAATTGGAGTAATTGGAGCTCAAAGTATTGGCGAGCCTGGGACACAGATGACATTAAAAACTTTTCACTTTGCTGGAGTTGCAAGCATGAATGTTACACTTGGAGTCCCTCGTATCAAGGAGATAATAAATGGAGCAAAAAATATTCATACCCCAATCATTACTACAGTACTCGAGTGTGATAATAATCCAATGATTGCACGGATGGTGGCAGGTCGGATTGAAAAAACAAATTTAGGGCAGGTTGCTGAGTGTATAGAGATTGTAATGAGTCCAAGAGCAGCATATGTAGAAGTCAAGCTTGATATGGCGGTGATACAAGATGCACACTTGTCAATAGATGCCAATGTTGTAAAACAATCAATTTTGGGAACTCCAAGGATTAAACTGAAACATGAGCACATTAGGGTTCCAGATAATCAAACAGTTGAAGTTCATTCTCACGAGAAGGATAGAAGAAAACTTCATTTTCACCTCTACTATTTGAAGAGTATACTCCCCAATGTTATAGTACGGGGTATAAAGACAATCGAACGTGTTGTCATCGATGAAGAAAAAGTTAAAAGGGACAAAAAAGATATTGATATTAAATGTGGAGACGAAAAGAAGTACAAGTTGTTTGCTGAAGGCAAGGGTCTTCTAGCAGTAATGAGCACTAAAGGAGTAGATGGTTGTAAAACCACAAGTAATGATATTATTGAAGTGCAGCAGACACTTGGAATTGAAGCTGCAAGAACTTGTATCATTGAGGAGATAAAGTATACTATGAAATCACACGGAATGAACATAGATGATCGCCATATGATGCTTTTAGCGGATGTAATGACGTTCAGAGGTTTAGTTCTTGGAATCACAAGATTCGGCGTTCAACAGATGGGCAAAAGTGTATTGATGCTGGCTTCATTTGAGCGAACAGATGATCATCTATTTAATGCTTCCGTTCAGGGGACAGTTGACAAAATTGAAGGAGTAAGTGAAAGCATAATCATGGGTATACCAATGCCGATAGGCACCGGAATGTTCAAAATTAAACAACGCCTCCCTGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1391

Amino Acids

154.41

Weight (kDa)

8.9

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	6 - 236	4.7e-43	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	238 - 405	2.8e-72	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	408 - 587	6.9e-38	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	615 - 718	1e-28	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	725 - 1220	1.6e-88	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1473, 1640
AarI	CACCTGC	1 cut(s)	1741
Acc36I	ACCTGC	3 cut(s)	1741, 3323, 3352
AccB1I	GGYRCC	2 cut(s)	1235, 4130
AccB7I	CCANNNNNTGG	3 cut(s)	515, 1001, 1901
AccI	GTMKAC	4 cut(s)	724, 3613, 3881, 4114
AccII	CGCG	2 cut(s)	960, 1170
AciI	CCGC	8 cut(s)	202, 960, 1201, 1514, 2668, 2673, 3431, 3935
AclWI	GGATC	8 cut(s)	608, 621, 805, 892, 2075, 2365, 2714, 2727
AcsI	RAATTY	3 cut(s)	138, 1798, 3352
AcuI	CTGAAG	3 cut(s)	1884, 3080, 3765
AfiI	CCNNNNNNNGG	9 cut(s)	182, 430, 515, 1001, 1586, 1587, 1901, 2885, 4065
AflIII	ACRYGT	3 cut(s)	1168, 2607, 3655
AgeI	ACCGGT	1 cut(s)	2766
AjnI	CCWGG	6 cut(s)	268, 1231, 2215, 2925, 2986, 3157
AleI	CACNNNNGTG	1 cut(s)	1684
AloI	GAACNNNNNNTCC	2 cut(s)	2673, 2705
Alw21I	GWGCWC	5 cut(s)	1248, 2425, 3142, 3522, 3776
Alw26I	GTCTC	7 cut(s)	233, 414, 1305, 1998, 2271, 2616, 3711
Alw44I	GTGCAC	1 cut(s)	2421
AlwI	GGATC	8 cut(s)	608, 621, 805, 892, 2075, 2365, 2714, 2727
Ama87I	CYCGRG	2 cut(s)	1322, 3293
AoxI	GGCC	5 cut(s)	208, 1143, 2566, 2670, 2787
ApaI	GGGCCC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	2421
ApoI	RAATTY	3 cut(s)	138, 1798, 3352
ArsI	GACNNNNNNTTYG	2 cut(s)	3645, 3677
AseI	ATTAAT	1 cut(s)	630
AsiGI	ACCGGT	1 cut(s)	2766
Asp700I	GAANNNNTTC	1 cut(s)	918
AspLEI	GCGC	3 cut(s)	937, 1017, 2752
AspS9I	GGNCC	8 cut(s)	208, 209, 871, 1144, 1217, 1272, 2638, 2670
AsuC2I	CCSGG	3 cut(s)	1323, 1324, 2062
AsuHPI	GGTGA	5 cut(s)	242, 1502, 3010, 3445, 3584
AvaI	CYCGRG	2 cut(s)	1322, 3293
AvaII	GGWCC	4 cut(s)	871, 1217, 1272, 2638
BaeGI	GKGCMC	9 cut(s)	69, 212, 509, 969, 1240, 1895, 1958, 2062, 2425
BaeI	ACNNNNGTAYC	2 cut(s)	2568, 2601
BamHI	GGATCC	2 cut(s)	613, 2719
BanI	GGYRCC	2 cut(s)	1235, 4130
BanII	GRGCYC	3 cut(s)	212, 547, 3142
BarI	GAAGNNNNNNTAC	2 cut(s)	2187, 2219
BauI	CACGAG	1 cut(s)	3563
BbsI	GAAGAC	2 cut(s)	1034, 3749
Bbv12I	GWGCWC	5 cut(s)	1248, 2425, 3142, 3522, 3776
BceAI	ACGGC	1 cut(s)	2737
BciT130I	CCWGG	6 cut(s)	270, 1233, 2217, 2927, 2988, 3159
BciVI	GTATCC	1 cut(s)	2569
BclI	TGATCA	1 cut(s)	4039
BcnI	CCSGG	3 cut(s)	1323, 1324, 2062
BcoDI	GTCTC	7 cut(s)	233, 414, 1305, 1998, 2271, 2616, 3711
BfaI	CTAG	9 cut(s)	146, 474, 1241, 2463, 2502, 2633, 3051, 3071, 3761
BfmI	CTRYAG	8 cut(s)	70, 765, 1737, 2256, 2481, 2913, 3014, 3285
BfoI	RGCGCY	2 cut(s)	1018, 2753
BfuAI	ACCTGC	3 cut(s)	1741, 3323, 3352
BfuI	GTATCC	1 cut(s)	2569
BmcAI	AGTACT	1 cut(s)	3291
Bme1390I	CCNGG	9 cut(s)	270, 1233, 1323, 1324, 2062, 2217, 2927, 2988, 3159
Bme18I	GGWCC	4 cut(s)	871, 1217, 1272, 2638
BmeT110I	CYCGRG	2 cut(s)	1322, 3293
BmgT120I	GGNCC	8 cut(s)	208, 209, 871, 1144, 1217, 1272, 2638, 2670
BmiI	GGNNCC	7 cut(s)	210, 615, 1237, 2350, 2721, 3531, 4132
BmrFI	CCNGG	9 cut(s)	270, 1233, 1323, 1324, 2062, 2217, 2927, 2988, 3159
BmrI	ACTGGG	2 cut(s)	2106, 2335
BmuI	ACTGGG	2 cut(s)	2106, 2335
BpiI	GAAGAC	2 cut(s)	1034, 3749
BplI	GAGNNNNNCTC	2 cut(s)	2627, 2659
BpmI	CTGGAG	2 cut(s)	2823, 3216
BpuEI	CTTGAG	2 cut(s)	531, 1596
BpuMI	CCSGG	3 cut(s)	1323, 1324, 2062
Bsa29I	ATCGAT	1 cut(s)	3666
BsaBI	GATNNNNATC	4 cut(s)	165, 1400, 3306, 4041
BsaI	GGTCTC	2 cut(s)	414, 2271
BsaWI	WCCGGW	2 cut(s)	2766, 4133
Bsc4I	CCNNNNNNNGG	9 cut(s)	182, 430, 515, 1001, 1586, 1587, 1901, 2885, 4065
Bse118I	RCCGGY	1 cut(s)	2766
Bse1I	ACTGG	4 cut(s)	1081, 2112, 2290, 2341
Bse3DI	GCAATG	4 cut(s)	230, 750, 1893, 2733
Bse8I	GATNNNNATC	4 cut(s)	165, 1400, 3306, 4041
BseBI	CCWGG	6 cut(s)	270, 1233, 2217, 2927, 2988, 3159
BseCI	ATCGAT	1 cut(s)	3666
BseJI	GATNNNNATC	4 cut(s)	165, 1400, 3306, 4041
BseLI	CCNNNNNNNGG	9 cut(s)	182, 430, 515, 1001, 1586, 1587, 1901, 2885, 4065
BseMI	GCAATG	4 cut(s)	230, 750, 1893, 2733
BseMII	CTCAG	6 cut(s)	1110, 1527, 1701, 2014, 3360, 4155
BseNI	ACTGG	4 cut(s)	1081, 2112, 2290, 2341
BseRI	GAGGAG	2 cut(s)	1538, 3884
BseSI	GKGCMC	9 cut(s)	69, 212, 509, 969, 1240, 1895, 1958, 2062, 2425
BseYI	CCCAGC	1 cut(s)	1283
BsgI	GTGCAG	2 cut(s)	1031, 3845
Bsh1236I	CGCG	2 cut(s)	960, 1170
Bsh1285I	CGRYCG	1 cut(s)	1339
BshFI	GGCC	5 cut(s)	210, 1145, 2568, 2672, 2789
BshNI	GGYRCC	2 cut(s)	1235, 4130
BshTI	ACCGGT	1 cut(s)	2766
BshVI	ATCGAT	1 cut(s)	3666
BsiEI	CGRYCG	1 cut(s)	1339
BsiHKAI	GWGCWC	5 cut(s)	1248, 2425, 3142, 3522, 3776
BsiHKCI	CYCGRG	2 cut(s)	1322, 3293
BsiSI	CCGG	4 cut(s)	1323, 2062, 2767, 4134
BslI	CCNNNNNNNGG	9 cut(s)	182, 430, 515, 1001, 1586, 1587, 1901, 2885, 4065
BsmAI	GTCTC	7 cut(s)	233, 414, 1305, 1998, 2271, 2616, 3711
BsmBI	CGTCTC	1 cut(s)	3711
BsnI	GGCC	5 cut(s)	210, 1145, 2568, 2672, 2789
Bso31I	GGTCTC	2 cut(s)	414, 2271
BsoBI	CYCGRG	2 cut(s)	1322, 3293
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1407I	TGTACA	3 cut(s)	939, 2104, 2187
BspACI	CCGC	8 cut(s)	202, 960, 1201, 1514, 2668, 2673, 3431, 3935
BspANI	GGCC	5 cut(s)	210, 1145, 2568, 2672, 2789
BspCNI	CTCAG	6 cut(s)	1111, 1528, 1702, 2013, 3361, 4156
BspDI	ATCGAT	1 cut(s)	3666
BspFNI	CGCG	2 cut(s)	960, 1170
BspHI	TCATGA	2 cut(s)	606, 741
BspLI	GGNNCC	7 cut(s)	210, 615, 1237, 2350, 2721, 3531, 4132
BspMAI	CTGCAG	3 cut(s)	74, 2260, 2485
BspMI	ACCTGC	3 cut(s)	1741, 3323, 3352
BspPI	GGATC	8 cut(s)	608, 621, 805, 892, 2075, 2365, 2714, 2727
BspT107I	GGYRCC	2 cut(s)	1235, 4130
BspTNI	GGTCTC	2 cut(s)	414, 2271
BsrDI	GCAATG	4 cut(s)	230, 750, 1893, 2733
BsrFI	RCCGGY	1 cut(s)	2766
BsrGI	TGTACA	3 cut(s)	939, 2104, 2187
BsrI	ACTGG	4 cut(s)	1081, 2112, 2290, 2341
BssAI	RCCGGY	1 cut(s)	2766
BssNAI	GTATAC	3 cut(s)	3614, 3882, 4115
BssSI	CACGAG	1 cut(s)	3563
BssT1I	CCWWGG	5 cut(s)	618, 1430, 2352, 2784, 3497
Bst1107I	GTATAC	3 cut(s)	3614, 3882, 4115
Bst2BI	CACGAG	1 cut(s)	3563
Bst2UI	CCWGG	6 cut(s)	270, 1233, 2217, 2927, 2988, 3159
Bst6I	CTCTTC	3 cut(s)	1055, 1867, 3602
BstAUI	TGTACA	3 cut(s)	939, 2104, 2187
BstC8I	GCNNGC	9 cut(s)	202, 294, 558, 2300, 2670, 2855, 3155, 3205, 4017
BstDEI	CTNAG	7 cut(s)	1119, 1345, 1536, 1710, 2000, 3369, 4164
BstFNI	CGCG	2 cut(s)	960, 1170
BstH2I	RGCGCY	2 cut(s)	1018, 2753
BstHHI	GCGC	3 cut(s)	937, 1017, 2752
BstMAI	GTCTC	7 cut(s)	233, 414, 1305, 1998, 2271, 2616, 3711
BstMCI	CGRYCG	1 cut(s)	1339
BstMWI	GCNNNNNNNGC	7 cut(s)	483, 932, 1513, 1753, 2021, 3119, 3200
BstNI	CCWGG	6 cut(s)	270, 1233, 2217, 2927, 2988, 3159
BstNSI	RCATGY	5 cut(s)	481, 1511, 1718, 2302, 2611
BstSCI	CCNGG	9 cut(s)	268, 1231, 1321, 1322, 2060, 2215, 2925, 2986, 3157
BstSFI	CTRYAG	8 cut(s)	70, 765, 1737, 2256, 2481, 2913, 3014, 3285
BstSLI	GKGCMC	9 cut(s)	69, 212, 509, 969, 1240, 1895, 1958, 2062, 2425
BstUI	CGCG	2 cut(s)	960, 1170
BstV2I	GAAGAC	2 cut(s)	1034, 3749
BstX2I	RGATCY	4 cut(s)	613, 884, 2357, 2719
BstYI	RGATCY	4 cut(s)	613, 884, 2357, 2719
BstZ17I	GTATAC	3 cut(s)	3614, 3882, 4115
Bsu15I	ATCGAT	1 cut(s)	3666
BsuI	GTATCC	1 cut(s)	2569
BsuRI	GGCC	5 cut(s)	210, 1145, 2568, 2672, 2789
BsuTUI	ATCGAT	1 cut(s)	3666
BtsI	GCAGTG	1 cut(s)	67
BveI	ACCTGC	3 cut(s)	1741, 3323, 3352
Cac8I	GCNNGC	9 cut(s)	202, 294, 558, 2300, 2670, 2855, 3155, 3205, 4017
CciI	TCATGA	2 cut(s)	606, 741
CfoI	GCGC	3 cut(s)	937, 1017, 2752
Cfr10I	RCCGGY	1 cut(s)	2766
Cfr13I	GGNCC	8 cut(s)	208, 209, 871, 1144, 1217, 1272, 2638, 2670
Cfr9I	CCCGGG	1 cut(s)	1322
ClaI	ATCGAT	1 cut(s)	3666
CsiI	ACCWGGT	1 cut(s)	2215
CspAI	ACCGGT	1 cut(s)	2766
DdeI	CTNAG	7 cut(s)	1119, 1345, 1536, 1710, 2000, 3369, 4164
DraI	TTTAAA	3 cut(s)	589, 2265, 2905
Eam1104I	CTCTTC	3 cut(s)	1055, 1867, 3602
EarI	CTCTTC	3 cut(s)	1055, 1867, 3602
Ecl136II	GAGCTC	1 cut(s)	3140
Eco130I	CCWWGG	5 cut(s)	618, 1430, 2352, 2784, 3497
Eco147I	AGGCCT	1 cut(s)	2568
Eco24I	GRGCYC	3 cut(s)	212, 547, 3142
Eco31I	GGTCTC	2 cut(s)	414, 2271
Eco47I	GGWCC	4 cut(s)	871, 1217, 1272, 2638
Eco53kI	GAGCTC	1 cut(s)	3140
Eco57I	CTGAAG	3 cut(s)	1884, 3080, 3765
Eco88I	CYCGRG	2 cut(s)	1322, 3293
EcoICRI	GAGCTC	1 cut(s)	3140
EcoO109I	RGGNCCY	3 cut(s)	209, 871, 2638
EcoRI	GAATTC	1 cut(s)	1798
EcoRII	CCWGG	6 cut(s)	268, 1231, 2215, 2925, 2986, 3157
EcoT14I	CCWWGG	5 cut(s)	618, 1430, 2352, 2784, 3497
EcoT22I	ATGCAT	1 cut(s)	1509
EcoT38I	GRGCYC	3 cut(s)	212, 547, 3142
ErhI	CCWWGG	5 cut(s)	618, 1430, 2352, 2784, 3497
Esp3I	CGTCTC	1 cut(s)	3711
FalI	AAGNNNNNCTT	2 cut(s)	3405, 3437
FauI	CCCGC	2 cut(s)	209, 2661
FauNDI	CATATG	3 cut(s)	645, 3406, 3921
FbaI	TGATCA	1 cut(s)	4039
FblI	GTMKAC	4 cut(s)	724, 3613, 3881, 4114
FriOI	GRGCYC	3 cut(s)	212, 547, 3142
FspBI	CTAG	9 cut(s)	146, 474, 1241, 2463, 2502, 2633, 3051, 3071, 3761
GlaI	GCGC	3 cut(s)	936, 1016, 2751
GsaI	CCCAGC	1 cut(s)	1287
GsuI	CTGGAG	2 cut(s)	2823, 3216
HaeII	RGCGCY	2 cut(s)	1018, 2753
HaeIII	GGCC	5 cut(s)	210, 1145, 2568, 2672, 2789
HapII	CCGG	4 cut(s)	1323, 2062, 2767, 4134
HhaI	GCGC	3 cut(s)	937, 1017, 2752
Hin6I	GCGC	3 cut(s)	935, 1015, 2750
HinP1I	GCGC	3 cut(s)	935, 1015, 2750
HincII	GTYRAC	2 cut(s)	2399, 4075
HindII	GTYRAC	2 cut(s)	2399, 4075
HindIII	AAGCTT	2 cut(s)	1384, 3419
HpaII	CCGG	4 cut(s)	1323, 2062, 2767, 4134
HphI	GGTGA	5 cut(s)	242, 1502, 3010, 3445, 3584
Hpy99I	CGWCG	1 cut(s)	2421
HpyCH4IV	ACGT	3 cut(s)	339, 3655, 3947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	483, 932, 1513, 1753, 2021, 3119, 3200
HpyF3I	CTNAG	7 cut(s)	1119, 1345, 1536, 1710, 2000, 3369, 4164
HpySE526I	ACGT	3 cut(s)	339, 3655, 3947
HspAI	GCGC	3 cut(s)	935, 1015, 2750
Ksp22I	TGATCA	1 cut(s)	4039
LmnI	GCTCC	3 cut(s)	2747, 3137, 3254
MabI	ACCWGGT	1 cut(s)	2215
MaeI	CTAG	9 cut(s)	146, 474, 1241, 2463, 2502, 2633, 3051, 3071, 3761
MaeII	ACGT	3 cut(s)	339, 3655, 3947
MaeIII	GTNAC	9 cut(s)	230, 272, 442, 1490, 1919, 2114, 2168, 3043, 3214
MfeI	CAATTG	3 cut(s)	561, 2088, 3123
MflI	RGATCY	4 cut(s)	613, 884, 2357, 2719
MluI	ACGCGT	1 cut(s)	1168
MlyI	GAGTC	3 cut(s)	2869, 3234, 3400
MmeI	TCCRAC	5 cut(s)	174, 295, 1105, 1875, 3317
Mph1103I	ATGCAT	1 cut(s)	1509
MroXI	GAANNNNTTC	1 cut(s)	918
MslI	CAYNNNNRTG	4 cut(s)	755, 1684, 4106, 4136
MspA1I	CMGCKG	2 cut(s)	2582, 3058
MspI	CCGG	4 cut(s)	1323, 2062, 2767, 4134
MspR9I	CCNGG	9 cut(s)	270, 1233, 1323, 1324, 2062, 2217, 2927, 2988, 3159
MunI	CAATTG	3 cut(s)	561, 2088, 3123
MvaI	CCWGG	6 cut(s)	270, 1233, 2217, 2927, 2988, 3159
MvnI	CGCG	2 cut(s)	960, 1170
MwoI	GCNNNNNNNGC	7 cut(s)	483, 932, 1513, 1753, 2021, 3119, 3200
NciI	CCSGG	3 cut(s)	1323, 1324, 2062
NdeI	CATATG	3 cut(s)	645, 3406, 3921
NlaIV	GGNNCC	7 cut(s)	210, 615, 1237, 2350, 2721, 3531, 4132
NmeAIII	GCCGAG	1 cut(s)	952
NmuCI	GTSAC	7 cut(s)	230, 272, 442, 1490, 2114, 2168, 3043
NsiI	ATGCAT	1 cut(s)	1509
NspI	RCATGY	5 cut(s)	481, 1511, 1718, 2302, 2611
OliI	CACNNNNGTG	1 cut(s)	1684
PaeI	GCATGC	1 cut(s)	2302
PaeR7I	CTCGAG	1 cut(s)	3293
PagI	TCATGA	2 cut(s)	606, 741
PaqCI	CACCTGC	1 cut(s)	1741
PceI	AGGCCT	1 cut(s)	2568
PciI	ACATGT	1 cut(s)	2607
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	9 cut(s)	598, 1128, 1454, 2038, 2082, 2243, 2977, 3969, 3978
PflFI	GACNNNGTC	2 cut(s)	1331, 1627
PflMI	CCANNNNNTGG	3 cut(s)	515, 1001, 1901
PfoI	TCCNGGA	1 cut(s)	2925
PinAI	ACCGGT	1 cut(s)	2766
Ple19I	CGATCG	1 cut(s)	1339
PleI	GAGTC	3 cut(s)	2869, 3233, 3399
PpsI	GAGTC	3 cut(s)	2869, 3233, 3399
PpuMI	RGGWCCY	2 cut(s)	871, 2638
PscI	ACATGT	1 cut(s)	2607
PshBI	ATTAAT	1 cut(s)	630
PsiI	TTATAA	2 cut(s)	1473, 1640
Psp124BI	GAGCTC	1 cut(s)	3142
Psp5II	RGGWCCY	2 cut(s)	871, 2638
Psp6I	CCWGG	6 cut(s)	268, 1231, 2215, 2925, 2986, 3157
PspFI	CCCAGC	1 cut(s)	1283
PspGI	CCWGG	6 cut(s)	268, 1231, 2215, 2925, 2986, 3157
PspN4I	GGNNCC	7 cut(s)	210, 615, 1237, 2350, 2721, 3531, 4132
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	8 cut(s)	208, 209, 871, 1144, 1217, 1272, 2638, 2670
PspPPI	RGGWCCY	2 cut(s)	871, 2638
PspXI	VCTCGAGB	1 cut(s)	3293
PstI	CTGCAG	3 cut(s)	74, 2260, 2485
PsuI	RGATCY	4 cut(s)	613, 884, 2357, 2719
PsyI	GACNNNGTC	2 cut(s)	1331, 1627
PvuI	CGATCG	1 cut(s)	1339
PvuII	CAGCTG	2 cut(s)	2582, 3058
RseI	CAYNNNNRTG	4 cut(s)	755, 1684, 4106, 4136
SacI	GAGCTC	1 cut(s)	3142
Sau96I	GGNCC	8 cut(s)	208, 209, 871, 1144, 1217, 1272, 2638, 2670
ScaI	AGTACT	1 cut(s)	3291
SchI	GAGTC	3 cut(s)	2869, 3234, 3400
ScrFI	CCNGG	9 cut(s)	270, 1233, 1323, 1324, 2062, 2217, 2927, 2988, 3159
SexAI	ACCWGGT	1 cut(s)	2215
SfcI	CTRYAG	8 cut(s)	70, 765, 1737, 2256, 2481, 2913, 3014, 3285
Sfr274I	CTCGAG	1 cut(s)	3293
SinI	GGWCC	4 cut(s)	871, 1217, 1272, 2638
SlaI	CTCGAG	1 cut(s)	3293
SmaI	CCCGGG	1 cut(s)	1324
SmiMI	CAYNNNNRTG	4 cut(s)	755, 1684, 4106, 4136
SmlI	CTYRAG	3 cut(s)	546, 1611, 3293
SmoI	CTYRAG	3 cut(s)	546, 1611, 3293
SphI	GCATGC	1 cut(s)	2302
SseBI	AGGCCT	1 cut(s)	2568
SsiI	CCGC	8 cut(s)	202, 960, 1201, 1514, 2668, 2673, 3431, 3935
SspI	AATATT	2 cut(s)	1186, 3265
SspMI	CTAG	9 cut(s)	146, 474, 1241, 2463, 2502, 2633, 3051, 3071, 3761
SstI	GAGCTC	1 cut(s)	3142
StuI	AGGCCT	1 cut(s)	2568
StyD4I	CCNGG	9 cut(s)	268, 1231, 1321, 1322, 2060, 2215, 2925, 2986, 3157
StyI	CCWWGG	5 cut(s)	618, 1430, 2352, 2784, 3497
TaiI	ACGT	3 cut(s)	342, 3658, 3950
TatI	WGTACW	6 cut(s)	470, 939, 2104, 2187, 3289, 3729
TauI	GCSGC	2 cut(s)	1516, 2675
TfiI	GAWTC	9 cut(s)	598, 1128, 1454, 2038, 2082, 2243, 2977, 3969, 3978
TseFI	GTSAC	7 cut(s)	230, 272, 442, 1490, 2114, 2168, 3043
Tsp45I	GTSAC	7 cut(s)	230, 272, 442, 1490, 2114, 2168, 3043
TspGWI	ACGGA	7 cut(s)	772, 1535, 1907, 2094, 3337, 3912, 4048
TspMI	CCCGGG	1 cut(s)	1322
Tth111I	GACNNNGTC	2 cut(s)	1331, 1627
Van91I	CCANNNNNTGG	3 cut(s)	515, 1001, 1901
VneI	GTGCAC	1 cut(s)	2421
VpaK11BI	GGWCC	4 cut(s)	871, 1217, 1272, 2638
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	3 cut(s)	138, 1798, 3352
XbaI	TCTAGA	2 cut(s)	2632, 3070
XceI	RCATGY	5 cut(s)	481, 1511, 1718, 2302, 2611
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1349, 1755, 3035
XhoI	CTCGAG	1 cut(s)	3293
XmaI	CCCGGG	1 cut(s)	1322
XmiI	GTMKAC	4 cut(s)	724, 3613, 3881, 4114
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	9 cut(s)	146, 474, 1241, 2463, 2502, 2633, 3051, 3071, 3761
ZrmI	AGTACT	1 cut(s)	3291
Zsp2I	ATGCAT	1 cut(s)	1509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.