Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019271.1

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 13946

Gene Structure 13945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2771 bp

atgctggcaattgttcatggtgctgtggatgactttaaatcagcgagtcctgtcatgaaggattccaaggcatccattaatctccaacctcatatgcttaaccctgttaaagttttttctttgttcaaaagaatgcttgatgaggattgtgaacttcttaatcttaaaagtagaccagagaacctcatcatgacaaccattgctgtgccacctatagccattcgtccttccgttcttgtggatggatcacagagtaacgaaaatgacattacagagaggttgaagaaaattattcaaacaaacgctaatgttcaactggacctatcagaaggttctaccacaagatttttgtcaaattgggacgtacttcaagccgaagttgcgctgtacataaacagtgatgttcgcggtattccttatcacgtgcaactaaataccaagccattgaatggtttggtacagcgcctcaaagggaagacgggccgttttcgtggaaacctatgtgggaaaagggttgaatatactggcagaactgttatttcacccgaccctaatctgaaaattactgaggtcggaatccctatccaaatggctcagattttaagttatccagaacgtgtgtcccatcataatattgaaaagttgaagcagtgtgtatttaatggaccttctaagtaccctggtgccctagtgctcaaacatcaaaatggcgaggaatggtccttgagggctgagcgacaaaggaagtctcatgctgataatctccgatatggtgacatagttgatcgccacttagaagatggggacattgttcttttcaacagacagccaagcttgcatcggatgtccatcatgtgtcatagggcaaggattatgccttggagaacgttgaggtttaatgaatctgtatgcaacccttataatgctgattttgatggtgacgaaatgaacatgcatgtgccgcaaacagaggaggctcgaactgaggctgttatgttgatgggggtgcaaaacaatctatgcactcccaaaaatggggagattttggttgcttccactcaagattttctaacatcttctttccttataacaaggaaggacacattttatgaccgtgcatctttttctctcatgtgttcgtacatgggggatggcacggagactgtggatttgccaacacctgcagtaattaagccaatagagctatggacaggaaagcagctatatagtgtgttagttcgcccaaattcaaatgtgagagtatatctaaacctaactgttagagagaaatcctactccaacacaaaaactgaagatggaagagaaacagaagcaatgtgcccaaacgatgggtttgtctatttccgtaacagtgagctattatctgggcaacttgggaagggcactttaggaaatggcaataaggatggacttttctctgttcttctcagagactataaagctcatgctgctgcttcttgcatgaatcgtgtagctaaattgagtgcccggtggattggtaatcacggattctcaattgggattagtgatgtacaacctagtgacatcttgtacggtgagaaagaaaaaatcattaagaaaggttatgacaaatgtgacgaccagataaagttgtataaagaaggacagctacgacttgcacctggttgtgatgctgcccaatcacttgaatctgggattactgcagtattaaacgatattagggaccaaactggaaagctgtgcatgcaaacgctacattggagaaacagtcccctgattatgtcccagtgtggttccaaaggatctgctatcaatatcagccagatggttgcttgtgttggtcaacaatcagttggtggtcgtcgtgcaccaaatggtttcatagatcgaagccttcctcactttcctagaaaagaaaatacccctgcagtaaaaactgctgacacagggtacatgtctcgtagattgtctaaagttctagaggacctctctgtccagtatgataaaacagtgcgggccgcaaatggaggtattgttcagttttgttatggggatgacggtatggatcctgccatgatggaaggaaaaagtggagctccgttagacttctaccgattgtttttcaaagctaaggccacatgccctgctgaagaaagtaaaagcctttctcctgatgaagtgtctgaaatagtgagaagcaggctttcggaacaagatatgactcctgatggtggttgctctatgggttttaaaagttctatagagcaattcctggatgaatatgtaaaagcattaagaaaaacacaggaggcttttttattgaatcaaagtcctggttggaaggtgaagtctgcaactgtagagaagattgtccaaaatatatctggtgtcacttctagacagctgaaggtttttctagatacttgtatttctcgttatcattcaaaaaaagttgatgcgggaacagcaattggagtaattggagctcaaagcattggcgagcctgggacacagatgacgttaaaaacttttcactttgctggagttgcaagcatgaatgttacacttggagtccctcgtatcaaggaaataataaatggagcaaaaaatatccatacccctatcatcactacagtacttgagtgtgataataatccgatgattgcacggatggtagcaggtcggattgaaaaaacaaatctagggcaggttgctgagtgtatagagattgtaatgagtccaagagcagcatatgtagccatcaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

924

Amino Acids

102.55

Weight (kDa)

8.72

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	921, 1088
AarI	CACCTGC	1 cut(s)	1189
AasI	GACNNNNNNGTC	1 cut(s)	1994
Acc36I	ACCTGC	3 cut(s)	1189, 2672, 2701
AccB1I	GGYRCC	1 cut(s)	683
AccB7I	CCANNNNNTGG	2 cut(s)	449, 1349
AccI	GTMKAC	1 cut(s)	172
AccII	CGCG	1 cut(s)	408
AciI	CCGC	5 cut(s)	408, 962, 2017, 2022, 2462
AclI	AACGTT	1 cut(s)	887
AclWI	GGATC	4 cut(s)	253, 1813, 2063, 2076
AcsI	RAATTY	1 cut(s)	1246
AcuI	CTGAAG	3 cut(s)	1332, 2172, 2429
AcvI	CACGTG	1 cut(s)	424
AfaI	GTAC	9 cut(s)	366, 389, 459, 677, 1142, 1554, 1574, 1955, 2640
AfiI	CCNNNNNNNGG	5 cut(s)	449, 1034, 1035, 1349, 2234
AflIII	ACRYGT	2 cut(s)	616, 1956
AjnI	CCWGG	5 cut(s)	679, 1663, 2274, 2335, 2506
AloI	GAACNNNNNNTCC	2 cut(s)	2022, 2054
Alw21I	GWGCWC	4 cut(s)	696, 1873, 2101, 2491
Alw26I	GTCTC	4 cut(s)	753, 1154, 1446, 1965
Alw44I	GTGCAC	1 cut(s)	1869
AlwI	GGATC	4 cut(s)	253, 1813, 2063, 2076
AoxI	GGCC	3 cut(s)	481, 2019, 2136
ApaLI	GTGCAC	1 cut(s)	1869
ApeKI	GCWGC	5 cut(s)	1219, 1469, 1472, 1676, 2750
ApoI	RAATTY	1 cut(s)	1246
ArsI	GACNNNNNNTTYG	2 cut(s)	1153, 1185
AseI	ATTAAT	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	385, 465
AspS9I	GGNCC	7 cut(s)	319, 481, 665, 720, 1726, 1987, 2019
AsuC2I	CCSGG	1 cut(s)	1510
AsuHPI	GGTGA	5 cut(s)	534, 785, 950, 1589, 2359
AvaII	GGWCC	5 cut(s)	319, 665, 720, 1726, 1987
BaeGI	GKGCMC	5 cut(s)	688, 1343, 1406, 1510, 1873
BamHI	GGATCC	1 cut(s)	2068
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	2101, 2491
BarI	GAAGNNNNNNTAC	2 cut(s)	1635, 1667
BbrPI	CACGTG	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	4 cut(s)	696, 1873, 2101, 2491
BbvI	GCAGC	5 cut(s)	1231, 1456, 1459, 1663, 2762
BceAI	ACGGC	1 cut(s)	468
BciT130I	CCWGG	5 cut(s)	681, 1665, 2276, 2337, 2508
BcnI	CCSGG	1 cut(s)	1510
BcoDI	GTCTC	4 cut(s)	753, 1154, 1446, 1965
BfaI	CTAG	7 cut(s)	689, 1560, 1911, 1982, 2400, 2420, 2705
BfmI	CTRYAG	7 cut(s)	213, 1182, 1704, 1929, 2262, 2361, 2634
BfoI	RGCGCY	1 cut(s)	466
BfuAI	ACCTGC	3 cut(s)	1189, 2672, 2701
BisI	GCNGC	7 cut(s)	962, 1220, 1470, 1473, 1677, 2022, 2751
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	7 cut(s)	963, 1221, 1471, 1474, 1678, 2023, 2752
BmcAI	AGTACT	1 cut(s)	2640
Bme1390I	CCNGG	6 cut(s)	681, 1510, 1665, 2276, 2337, 2508
Bme18I	GGWCC	5 cut(s)	319, 665, 720, 1726, 1987
BmgT120I	GGNCC	7 cut(s)	319, 481, 665, 720, 1726, 1987, 2019
BmiI	GGNNCC	4 cut(s)	685, 1727, 1798, 2070
BmrFI	CCNGG	6 cut(s)	681, 1510, 1665, 2276, 2337, 2508
BmrI	ACTGGG	1 cut(s)	1783
BmsI	GCATC	5 cut(s)	80, 847, 1127, 1663, 2449
BmuI	ACTGGG	1 cut(s)	1783
BpiI	GAAGAC	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	1976, 2008
BpmI	CTGGAG	1 cut(s)	2565
Bpu10I	CCTNAGC	1 cut(s)	2133
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	3 cut(s)	745, 1044, 2663
BpuMI	CCSGG	1 cut(s)	1510
BsaAI	YACGTR	1 cut(s)	424
BsaBI	GATNNNNATC	2 cut(s)	848, 2655
BsaJI	CCNNGG	4 cut(s)	66, 679, 878, 2507
BsaXI	ACNNNNNCTCC	4 cut(s)	1756, 1786, 2022, 2052
Bsc4I	CCNNNNNNNGG	5 cut(s)	449, 1034, 1035, 1349, 2234
Bse1I	ACTGG	5 cut(s)	321, 529, 1738, 1789, 1999
Bse3DI	GCAATG	2 cut(s)	198, 1341
Bse8I	GATNNNNATC	2 cut(s)	848, 2655
BseBI	CCWGG	5 cut(s)	681, 1665, 2276, 2337, 2508
BseDI	CCNNGG	4 cut(s)	66, 679, 878, 2507
BseGI	GGATG	9 cut(s)	34, 71, 247, 849, 1156, 1432, 2062, 2284, 2679
BseJI	GATNNNNATC	2 cut(s)	848, 2655
BseLI	CCNNNNNNNGG	5 cut(s)	449, 1034, 1035, 1349, 2234
BseMI	GCAATG	2 cut(s)	198, 1341
BseMII	CTCAG	6 cut(s)	558, 608, 723, 975, 1462, 2709
BseNI	ACTGG	5 cut(s)	321, 529, 1738, 1789, 1999
BseRI	GAGGAG	1 cut(s)	986
BseSI	GKGCMC	5 cut(s)	688, 1343, 1406, 1510, 1873
BseXI	GCAGC	5 cut(s)	1231, 1456, 1459, 1663, 2762
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	483, 2021, 2138
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	4 cut(s)	696, 1873, 2101, 2491
BsiSI	CCGG	1 cut(s)	1510
BslFI	GGGAC	8 cut(s)	374, 607, 818, 1739, 1758, 1771, 2524, 2561
BslI	CCNNNNNNNGG	5 cut(s)	449, 1034, 1035, 1349, 2234
BsmAI	GTCTC	4 cut(s)	753, 1154, 1446, 1965
BsmFI	GGGAC	8 cut(s)	374, 607, 818, 1739, 1758, 1771, 2524, 2561
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	483, 2021, 2138
Bsp1286I	GDGCHC	8 cut(s)	688, 696, 1343, 1406, 1510, 1873, 2101, 2491
Bsp1407I	TGTACA	2 cut(s)	387, 1552
Bsp143I	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	5 cut(s)	408, 962, 2017, 2022, 2462
BspANI	GGCC	3 cut(s)	483, 2021, 2138
BspCNI	CTCAG	6 cut(s)	559, 607, 724, 976, 1461, 2710
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	2 cut(s)	54, 189
BspLI	GGNNCC	4 cut(s)	685, 1727, 1798, 2070
BspMAI	CTGCAG	3 cut(s)	1186, 1708, 1933
BspMI	ACCTGC	3 cut(s)	1189, 2672, 2701
BspPI	GGATC	4 cut(s)	253, 1813, 2063, 2076
BspT107I	GGYRCC	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	198, 1341
BsrGI	TGTACA	2 cut(s)	387, 1552
BsrI	ACTGG	5 cut(s)	321, 529, 1738, 1789, 1999
BssECI	CCNNGG	4 cut(s)	66, 679, 878, 2507
BssMI	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
BssT1I	CCWWGG	2 cut(s)	66, 878
Bst2UI	CCWGG	5 cut(s)	681, 1665, 2276, 2337, 2508
Bst6I	CTCTTC	1 cut(s)	1315
BstAUI	TGTACA	2 cut(s)	387, 1552
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	7 cut(s)	6, 836, 1748, 2019, 2204, 2504, 2554
BstDEI	CTNAG	9 cut(s)	567, 594, 672, 732, 793, 984, 1448, 2133, 2718
BstF5I	GGATG	9 cut(s)	34, 71, 247, 849, 1156, 1432, 2062, 2284, 2679
BstFNI	CGCG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	2 cut(s)	385, 465
BstKTI	GATC	5 cut(s)	248, 787, 1808, 1891, 2071
BstMAI	GTCTC	4 cut(s)	753, 1154, 1446, 1965
BstMBI	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
BstMWI	GCNNNNNNNGC	9 cut(s)	380, 835, 961, 1201, 1469, 1747, 2468, 2549, 2759
BstNI	CCWGG	5 cut(s)	681, 1665, 2276, 2337, 2508
BstNSI	RCATGY	5 cut(s)	955, 959, 1750, 1960, 2145
BstSCI	CCNGG	6 cut(s)	679, 1508, 1663, 2274, 2335, 2506
BstSFI	CTRYAG	7 cut(s)	213, 1182, 1704, 1929, 2262, 2361, 2634
BstSLI	GKGCMC	5 cut(s)	688, 1343, 1406, 1510, 1873
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	5 cut(s)	1231, 1456, 1459, 1663, 2762
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	1805, 2068
BstYI	RGATCY	2 cut(s)	1805, 2068
BsuRI	GGCC	3 cut(s)	483, 2021, 2138
BtsCI	GGATG	9 cut(s)	34, 71, 247, 849, 1156, 1432, 2062, 2284, 2679
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	5 cut(s)	403, 656, 1378, 1796, 2019
BveI	ACCTGC	3 cut(s)	1189, 2672, 2701
Cac8I	GCNNGC	7 cut(s)	6, 836, 1748, 2019, 2204, 2504, 2554
CciI	TCATGA	2 cut(s)	54, 189
CfoI	GCGC	2 cut(s)	385, 465
Cfr13I	GGNCC	7 cut(s)	319, 481, 665, 720, 1726, 1987, 2019
CsiI	ACCWGGT	1 cut(s)	1663
Csp6I	GTAC	9 cut(s)	365, 388, 458, 676, 1141, 1553, 1573, 1954, 2639
CviQI	GTAC	9 cut(s)	365, 388, 458, 676, 1141, 1553, 1573, 1954, 2639
DdeI	CTNAG	9 cut(s)	567, 594, 672, 732, 793, 984, 1448, 2133, 2718
DpnI	GATC	5 cut(s)	247, 786, 1807, 1890, 2070
DpnII	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
DraI	TTTAAA	2 cut(s)	37, 2254
DrdI	GACNNNNNNGTC	1 cut(s)	1994
DseDI	GACNNNNNNGTC	1 cut(s)	1994
Eam1104I	CTCTTC	1 cut(s)	1315
EarI	CTCTTC	1 cut(s)	1315
Ecl136II	GAGCTC	2 cut(s)	2099, 2489
Eco130I	CCWWGG	2 cut(s)	66, 878
Eco24I	GRGCYC	2 cut(s)	2101, 2491
Eco47I	GGWCC	5 cut(s)	319, 665, 720, 1726, 1987
Eco53kI	GAGCTC	2 cut(s)	2099, 2489
Eco57I	CTGAAG	3 cut(s)	1332, 2172, 2429
Eco72I	CACGTG	1 cut(s)	424
EcoICRI	GAGCTC	2 cut(s)	2099, 2489
EcoO109I	RGGNCCY	1 cut(s)	1987
EcoRII	CCWGG	5 cut(s)	679, 1663, 2274, 2335, 2506
EcoT14I	CCWWGG	2 cut(s)	66, 878
EcoT22I	ATGCAT	1 cut(s)	957
EcoT38I	GRGCYC	2 cut(s)	2101, 2491
ErhI	CCWWGG	2 cut(s)	66, 878
FaqI	GGGAC	8 cut(s)	374, 607, 818, 1739, 1758, 1771, 2524, 2561
FauI	CCCGC	2 cut(s)	2010, 2455
FauNDI	CATATG	2 cut(s)	93, 2755
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	7 cut(s)	962, 1220, 1470, 1473, 1677, 2022, 2751
FokI	GGATG	9 cut(s)	41, 58, 254, 856, 1163, 1439, 2069, 2291, 2686
FriOI	GRGCYC	2 cut(s)	2101, 2491
Fsp4HI	GCNGC	7 cut(s)	962, 1220, 1470, 1473, 1677, 2022, 2751
FspBI	CTAG	7 cut(s)	689, 1560, 1911, 1982, 2400, 2420, 2705
GlaI	GCGC	2 cut(s)	384, 464
GluI	GCNGC	7 cut(s)	962, 1220, 1470, 1473, 1677, 2022, 2751
GsuI	CTGGAG	1 cut(s)	2565
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	3 cut(s)	483, 2021, 2138
HapII	CCGG	1 cut(s)	1510
HhaI	GCGC	2 cut(s)	385, 465
Hin6I	GCGC	2 cut(s)	383, 463
HinP1I	GCGC	2 cut(s)	383, 463
HincII	GTYRAC	1 cut(s)	1847
HindII	GTYRAC	1 cut(s)	1847
HindIII	AAGCTT	1 cut(s)	832
HpaII	CCGG	1 cut(s)	1510
HphI	GGTGA	5 cut(s)	534, 785, 950, 1589, 2359
Hpy166II	GTNNAC	4 cut(s)	152, 173, 1847, 1871
Hpy188III	TCNNGA	9 cut(s)	55, 190, 611, 1061, 1982, 2174, 2228, 2400, 2420
Hpy8I	GTNNAC	4 cut(s)	152, 173, 1847, 1871
Hpy99I	CGWCG	1 cut(s)	1869
HpyCH4IV	ACGT	5 cut(s)	363, 423, 616, 887, 2522
HpyF10VI	GCNNNNNNNGC	9 cut(s)	380, 835, 961, 1201, 1469, 1747, 2468, 2549, 2759
HpyF3I	CTNAG	9 cut(s)	567, 594, 672, 732, 793, 984, 1448, 2133, 2718
HpySE526I	ACGT	5 cut(s)	363, 423, 616, 887, 2522
HspAI	GCGC	2 cut(s)	383, 463
Kzo9I	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
LmnI	GCTCC	4 cut(s)	2096, 2104, 2486, 2603
Lsp1109I	GCAGC	5 cut(s)	1231, 1456, 1459, 1663, 2762
LweI	GCATC	5 cut(s)	80, 847, 1127, 1663, 2449
MabI	ACCWGGT	1 cut(s)	1663
MaeI	CTAG	7 cut(s)	689, 1560, 1911, 1982, 2400, 2420, 2705
MaeII	ACGT	5 cut(s)	363, 423, 616, 887, 2522
MaeIII	GTNAC	8 cut(s)	254, 773, 938, 1367, 1562, 1616, 2392, 2563
MalI	GATC	5 cut(s)	247, 786, 1807, 1890, 2070
MboI	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
MboII	GAAGA	9 cut(s)	295, 487, 809, 1068, 1325, 1332, 1436, 2165, 2380
MfeI	CAATTG	3 cut(s)	9, 1536, 2472
MflI	RGATCY	2 cut(s)	1805, 2068
MhlI	GDGCHC	8 cut(s)	688, 696, 1343, 1406, 1510, 1873, 2101, 2491
MlyI	GAGTC	4 cut(s)	55, 2218, 2583, 2749
MmeI	TCCRAC	5 cut(s)	109, 553, 1323, 2321, 2666
Mph1103I	ATGCAT	1 cut(s)	957
MslI	CAYNNNNRTG	3 cut(s)	203, 705, 956
MspA1I	CMGCKG	1 cut(s)	2407
MspI	CCGG	1 cut(s)	1510
MspR9I	CCNGG	6 cut(s)	681, 1510, 1665, 2276, 2337, 2508
MunI	CAATTG	3 cut(s)	9, 1536, 2472
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	5 cut(s)	681, 1665, 2276, 2337, 2508
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	9 cut(s)	380, 835, 961, 1201, 1469, 1747, 2468, 2549, 2759
NciI	CCSGG	1 cut(s)	1510
NdeI	CATATG	2 cut(s)	93, 2755
NdeII	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
NlaIV	GGNNCC	4 cut(s)	685, 1727, 1798, 2070
NmuCI	GTSAC	5 cut(s)	773, 938, 1562, 1616, 2392
NsiI	ATGCAT	1 cut(s)	957
NspI	RCATGY	5 cut(s)	955, 959, 1750, 1960, 2145
PaeI	GCATGC	1 cut(s)	1750
PagI	TCATGA	2 cut(s)	54, 189
PaqCI	CACCTGC	1 cut(s)	1189
PciI	ACATGT	1 cut(s)	1956
PctI	GAATGC	1 cut(s)	138
PfeI	GAWTC	7 cut(s)	62, 576, 902, 1486, 1530, 1691, 2326
PflMI	CCANNNNNTGG	2 cut(s)	449, 1349
PfoI	TCCNGGA	1 cut(s)	2274
PkrI	GCNGC	7 cut(s)	963, 1221, 1471, 1474, 1678, 2023, 2752
PleI	GAGTC	4 cut(s)	54, 2218, 2582, 2748
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	4 cut(s)	54, 2218, 2582, 2748
Ppu21I	YACGTR	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	1987
PscI	ACATGT	1 cut(s)	1956
PshBI	ATTAAT	1 cut(s)	78
PsiI	TTATAA	2 cut(s)	921, 1088
Psp124BI	GAGCTC	2 cut(s)	2101, 2491
Psp1406I	AACGTT	1 cut(s)	887
Psp5II	RGGWCCY	1 cut(s)	1987
Psp6I	CCWGG	5 cut(s)	679, 1663, 2274, 2335, 2506
PspCI	CACGTG	1 cut(s)	424
PspGI	CCWGG	5 cut(s)	679, 1663, 2274, 2335, 2506
PspN4I	GGNNCC	4 cut(s)	685, 1727, 1798, 2070
PspPI	GGNCC	7 cut(s)	319, 481, 665, 720, 1726, 1987, 2019
PspPPI	RGGWCCY	1 cut(s)	1987
PstI	CTGCAG	3 cut(s)	1186, 1708, 1933
PsuI	RGATCY	2 cut(s)	1805, 2068
PvuII	CAGCTG	1 cut(s)	2407
RsaI	GTAC	9 cut(s)	366, 389, 459, 677, 1142, 1554, 1574, 1955, 2640
RsaNI	GTAC	9 cut(s)	365, 388, 458, 676, 1141, 1553, 1573, 1954, 2639
RseI	CAYNNNNRTG	3 cut(s)	203, 705, 956
SacI	GAGCTC	2 cut(s)	2101, 2491
SatI	GCNGC	7 cut(s)	962, 1220, 1470, 1473, 1677, 2022, 2751
Sau3AI	GATC	5 cut(s)	245, 784, 1805, 1888, 2068
Sau96I	GGNCC	7 cut(s)	319, 481, 665, 720, 1726, 1987, 2019
ScaI	AGTACT	1 cut(s)	2640
SchI	GAGTC	4 cut(s)	55, 2218, 2583, 2749
ScrFI	CCNGG	6 cut(s)	681, 1510, 1665, 2276, 2337, 2508
SduI	GDGCHC	8 cut(s)	688, 696, 1343, 1406, 1510, 1873, 2101, 2491
SexAI	ACCWGGT	1 cut(s)	1663
SfaNI	GCATC	5 cut(s)	80, 847, 1127, 1663, 2449
SfcI	CTRYAG	7 cut(s)	213, 1182, 1704, 1929, 2262, 2361, 2634
SinI	GGWCC	5 cut(s)	319, 665, 720, 1726, 1987
SmiMI	CAYNNNNRTG	3 cut(s)	203, 705, 956
SmlI	CTYRAG	3 cut(s)	724, 1059, 2642
SmoI	CTYRAG	3 cut(s)	724, 1059, 2642
SphI	GCATGC	1 cut(s)	1750
SsiI	CCGC	5 cut(s)	408, 962, 2017, 2022, 2462
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	7 cut(s)	689, 1560, 1911, 1982, 2400, 2420, 2705
SstI	GAGCTC	2 cut(s)	2101, 2491
StyD4I	CCNGG	6 cut(s)	679, 1508, 1663, 2274, 2335, 2506
StyI	CCWWGG	2 cut(s)	66, 878
TaiI	ACGT	5 cut(s)	366, 426, 619, 890, 2525
TaqI	TCGA	2 cut(s)	979, 1891
TatI	WGTACW	3 cut(s)	387, 1552, 2638
TauI	GCSGC	2 cut(s)	964, 2024
TfiI	GAWTC	7 cut(s)	62, 576, 902, 1486, 1530, 1691, 2326
TscAI	CASTG	5 cut(s)	403, 656, 1378, 1796, 2019
TseFI	GTSAC	5 cut(s)	773, 938, 1562, 1616, 2392
TseI	GCWGC	5 cut(s)	1219, 1469, 1472, 1676, 2750
Tsp45I	GTSAC	5 cut(s)	773, 938, 1562, 1616, 2392
TspDTI	ATGAA	9 cut(s)	5, 71, 915, 962, 1499, 1873, 2193, 2295, 2573
TspGWI	ACGGA	6 cut(s)	220, 1172, 1355, 1542, 2091, 2686
TspRI	CASTG	5 cut(s)	403, 656, 1378, 1796, 2019
Van91I	CCANNNNNTGG	2 cut(s)	449, 1349
VneI	GTGCAC	1 cut(s)	1869
VpaK11BI	GGWCC	5 cut(s)	319, 665, 720, 1726, 1987
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	1246
XbaI	TCTAGA	3 cut(s)	1981, 2399, 2419
XceI	RCATGY	5 cut(s)	955, 959, 1750, 1960, 2145
XcmI	CCANNNNNNNNNTGG	3 cut(s)	797, 1203, 2384
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	7 cut(s)	689, 1560, 1911, 1982, 2400, 2420, 2705
ZrmI	AGTACT	1 cut(s)	2640
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.