Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Forward (+)

18388757 .. 18393464

Gene Structure 4708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG202000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4167 bp

ATGAATACCCAACGGGCCCCAGTGGTCTTCACAAAACAGCCCTACATTGAACAAGAAGACCACCGGAGAATAGCCCAATGGGAATTCAACGCTCTTTCCCAGTCGGAGATCTCCAAAATGGCGGAGGCCCAAATCTTCGAAGGCAAGTACTACGATTCCGCCACCGGAAAACCCATCCAAGGCGGGTTGCTGGACCCCAGATTGGGCCCTGCGAATCGCCAGAGTGGCAACTGCGCCACTTGCTCTGCAAAACTCTCCGACTGCCCGGGGCACTTTGGGTATTTCATGCTTTCCCTCCCTGTTTTCAATGTTGGGTATTTGAATGTGGTTGTGGGCATTTTGAAGTGCATCTGTAAAATGTGCTCTAGAATTCTTTTGGATGAGAAACTGAGAAGCAAGAAGGAGTCGATGAAGGACATGAAATCGATAGTGAAGGAGTGTGTTAAGTCCTTGACGAATCATAGAGCAGTGGAGTGCTCCCATTGTGGGTATGCAAATGGCAATGTGAGAAGGGTTCCGGGGGATGTGGGAATTCAACACGATCATTCGGAACGAACTGTTAATGGTGTTGTGGTAGATGAGTATAAGTCGGCGATACTTGACAAGGGAGTCATTATTAATAAGCAACAAATTTTTTTGCTTGACCCTGCTAGAGTTTATTCTCTGTTTAGGAAGATGCTTGATGTGGATTGCCGGTTTCTGTGTCTTAAAACTCGACCGGAGAATCTCCTGTTGACTTGCATTCTTGTGCCGCCGATAGCTATTCGGCCTTCGGTTCTTGTAGGTGGATCACAGAGTAATGAGGATGATGTGACTGTGAGGCTGAAGAGGATTATTCAAGCAAATGCGAAACTTCGACTGCAGCTAACATCTGCAGGAAGTTCCTCTGCTGTGTCATTGTCTTGTTGGGAGGAGCTTCAGATTGAGGTTGCACAGTATATAAATAGTGACGCTCGTGTACACCTTCCGCCGAGCTTGAGAGCTCAACAACCTACCAAGCCATTGAGTGGTTTGGTGCAGCGCCTCAAAGGGAAGACGGGGCGGTTTCGTGGCACTTTGAGTGGGAAGCGTGTTGAATATACTGGGAGAAGTGTTATATCACCGGACCCTAATCTGAAAATTACTGAGGTTGGAATCCCTATGGAAATGGCTACAATTTTGAGTTATCCAGAACGTGTTTCCAAGCATAATATTGACAAGTTGAGGCTGTGTGTCAGTAATGGGCCTTATAAGTACCCAGGTGCCAAAATGTTGAGAAATCATGACGGCTCTGAGTTCACCTTGAAGGTTAACAGACAGGGCCGTGCTTGTGGACTCAAATGTGGTGACATAGTTGATCGGCATTTAGAAGACGGGGACATTGTTCTTTTCAACAGGCAACCGAGCTTGCATCGGATGTCTGTCATGTGTCATAGGGCAAGGATTATGCCACATTCGAGGACATTGAGGTTTAATGAATCTGTTTGCAACCCGTATAATGCTGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAAACTGAGGAGGCTCGTGCTGAGGCGCTTATGTTGATGGGGGTGCATAATAATCTATGCACTCCGAAAAATGGAGAGATTTTGGTTGCTTCCACTCAAGACTTTCTAACTTCTTCTTTCCTTATAACAAGGAAGGACACATTTTATGACCGTGCATCTTTTTCACTCCTGTGTTCATATATGGTTGATGGCAAGGCTTCTGTTGATTTGCCAACACCTGCTGTAGTTAAGCCAGTAGAGCTCTGGACAGGTAAGCAGCTATTTAATGTTTTAGTACGCCCAAACTCAAATGTGAGAGTCTATCTAAATCTTATTGTTAGGGAGAAATCCTACACCTCCGCCAGGACTGAGGATGGAAGAGAAACAGAAGCAATGTGCCCAAACGATGGTTTTGTCTATTTTCGCAACAGTGAGCTATTATCTGGGCAACTTGGGAAGGCTACCCTAGGAAATGGCAATAAGGATGGACTTTACTCTGTTCTTCTCAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGAATCGCCTAGCTAAATTAAGTGCACGGTGGATTGGTAATCATGGATTCTCGATTGGGCTTAGTGATGTACAACCAAGTGACAATTTGTATGATGAGAAAGAAAAAATCATCAAGGAAGGTTATAGCAAATGTGACAGCCAGATAGACTTGTATAATCAACGAAAGCTGGACTCACTTGAATCACTTGAGTCTGGGATTTCTGAGGTGTTAAATAAGATTAGAGATCAAACTGGAAAGCTGTGCATGCAAAAGCTACATTGGAGAAACAGTCCCTTGATAATGTCCCAGTGTGGCTCCAAGGGATCTGCTATCAATATTAGCCAGATGGTTGCCTGTGTTGGTCAGCAATCTGTTGGTGGTCGCCGTGCACCTGATGGTTTCATAGATCGAAGCCTTCCACACTTCCCTAGGAATGCAAAAATGCCTGCAGCTAAAGGCTTTGTAGCTAATTCCTTTTATAGTGGCCTGACACCTACAGAGTTTTTCTTTCATACAATGGGAGGGCGAGAGGGACTTGTTGATACAGCAGTGAAAACTGCTGAAACTGGGTACATGTCACGTAGATTGTCAAAGGTTTTAGAAGATCTCGCCATCCACTATGATAAAACAGTTCGGGTTGCCAATGGAGGTATAGTTCAGTTCTGTTATGGGGATGACGGTATGGACCCTGCTATGATGGAAGGGAAAAGTGGAGCACCGATAGACTTGTTTCGAATGTTTTTGAAAGCCAAGGCCACATGCCCTGCTGAAGAAACTGATAGCAGCCTGTCTCCTGAACAAGTGTCTGAAGTAGTGAGAAGCAGGCTTTCAGAACAAGATATGATTCCTGAAGACGGTTTGTCTATGTGTTTTAAAAGTTCTATAGAGAAATTCCTGGATGAATATGGAAAAACACAAAGAAAAACACAGGAGACTTTTTTGTTGAATCGAAGTTCTGGTTGGGAGGTGAAGTCTGCTATTCTGGAGAAGATTGTGAAAAATATATCTGGTGTCACTTCTAGACAGCTGGAGGTTTTTCTAGATACTTGTATATCTCGTTATCATTCAAAAAGAATTGATGCTGGAACGGCAATTGGAGCAATTGGAGCTCAAAGTATTGGCGAGCCTGTGACACAGATGACACTGAAAACCTTTCACTTTGCTGGAGTTGCAAGCATGAACGTTACACTTGGAGTCCCTCGGATAAAGGAGATAATAGATGGAGCAAAAAATATCAAGACACCCATCATCACTACAGTACTTGAGTGTGATAATAATGCGATGATTGCACGCATGGTGGCAGGTCGGATTGGGAGCACAAATTTAGGGCAGGTGGCTAAGAGTATAGGGATCCTAATGACTCCAAGACAGGCATGCATAGTCATCAAGCTTGATATGGTCATGATTCGAGATGCACAGTTGTCTATAGATGTTGATGTTGTGAAAGAATCAATTTTAAAAATTCCGAGAATCAAACTGAAGCAAGAGAATATTCAAGTTCCAGATAACGAAACTTTGGAAGTGTATTCTCAGGACAAGGATAGACGCAGACTTTATTTTGAGCTCTACAGATTAAAGAGTATCCTCCCCAATGTTACAGTAAGGGGCATAACGACAGTTCAGCGTGTTGTCATCGATGAAAGTGATGTGAAAAAGGATAAAGAAGATGTTCAAGTTAAAGGTGCAGATGTTGTTGGTAAGAAGTACAGGTTGTTTGCTGAAGGCAAGGGACTTCTGGCAGTAATGAGTACTGAAGGAGTAGATGGTTGTAAAACCACAAGTAATGACATTATTGAAGTGCAGCAGACACTTGGGATTGAAGCTGCGAGAATTTCTATCATAGAGGAGATAAAGTATACTATGAAGCAACATGGAATGAACATAGATGATCGCCATATGATGCTTTTAGCGGATGCAATGACTTCCAGGGGTCAAGTTCTTGGAATGACGAGATTTGGCCTTCAAAAGATGGACAAAAGTGTTTTAATGGGTGCTTCATTTGAGCGAACAGATGATCATCTGTTTAATGCTTGTGTGAAGGGGGCAGTGGACAAAATTGAAGGAGTAAGTGAAAGCATAATCATGGGTATACCAATGCCGATAGGAACTGGAATGTTCAAAGTTAAACACATCCTCTCTACTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1388

Amino Acids

154.18

Weight (kDa)

8.88

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	22 - 353	2.1e-69	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	355 - 521	2.3e-71	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	524 - 703	2.6e-37	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	733 - 828	4.9e-28	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	835 - 1334	1.5e-85	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1230, 1643
AarI	CACCTGC	2 cut(s)	1744, 3340
AasI	GACNNNNNNGTC	1 cut(s)	608
Acc36I	ACCTGC	3 cut(s)	1744, 3311, 3340
AccB1I	GGYRCC	1 cut(s)	1241
AccB7I	CCANNNNNTGG	2 cut(s)	1007, 1904
AccI	GTMKAC	2 cut(s)	3875, 4108
AciI	CCGC	8 cut(s)	122, 159, 183, 752, 968, 1042, 1857, 3929
AclI	AACGTT	1 cut(s)	3201
AclWI	GGATC	4 cut(s)	796, 2350, 3364, 3377
AcsI	RAATTY	8 cut(s)	83, 369, 531, 630, 2909, 3340, 3480, 3849
AcuI	CTGAAG	8 cut(s)	845, 902, 2808, 2847, 2889, 3518, 3759, 3792
AfaI	GTAC	9 cut(s)	149, 960, 1235, 1794, 2109, 2591, 3279, 3725, 3769
AfiI	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1007, 1589, 1860, 1904, 2873
AflIII	ACRYGT	2 cut(s)	1174, 2592
AhdI	GACNNNNNGTC	1 cut(s)	2878
AjnI	CCWGG	4 cut(s)	1237, 1859, 2913, 3944
AjuI	GAANNNNNNNTTGG	2 cut(s)	2962, 2994
AleI	CACNNNNGTG	1 cut(s)	1687
AloI	GAACNNNNNNTCC	2 cut(s)	2658, 2690
Alw26I	GTCTC	3 cut(s)	2001, 2814, 2945
Alw44I	GTGCAC	2 cut(s)	2061, 2406
AlwI	GGATC	4 cut(s)	796, 2350, 3364, 3377
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	9 cut(s)	15, 126, 205, 767, 1223, 1300, 2503, 2772, 3976
ApaI	GGGCCC	2 cut(s)	19, 209
ApaLI	GTGCAC	2 cut(s)	2061, 2406
ApeKI	GCWGC	9 cut(s)	862, 1018, 1774, 2024, 2027, 2468, 2802, 3820, 3842
ApoI	RAATTY	8 cut(s)	83, 369, 531, 630, 2909, 3340, 3480, 3849
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	3687
AspA2I	CCTAGG	2 cut(s)	1963, 2447
AspLEI	GCGC	3 cut(s)	236, 1023, 1546
AsuC2I	CCSGG	3 cut(s)	266, 267, 519
AsuHPI	GGTGA	5 cut(s)	1092, 1270, 1337, 1505, 2998
AsuII	TTCGAA	2 cut(s)	138, 2752
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	3 cut(s)	193, 1105, 2704
AvrII	CCTAGG	2 cut(s)	1963, 2447
BaeGI	GKGCMC	6 cut(s)	19, 209, 273, 1898, 2065, 2410
BaeI	ACNNNNGTAYC	2 cut(s)	2553, 2586
BamHI	GGATCC	1 cut(s)	3369
BanI	GGYRCC	1 cut(s)	1241
BanII	GRGCYC	6 cut(s)	19, 209, 985, 1761, 3130, 3585
BauI	CACGAG	2 cut(s)	954, 1533
BbsI	GAAGAC	5 cut(s)	19, 63, 1040, 1356, 2877
BbvCI	CCTCAGC	1 cut(s)	1539
BbvI	GCAGC	9 cut(s)	874, 1030, 1786, 2011, 2014, 2480, 2814, 3829, 3832
BceAI	ACGGC	4 cut(s)	1282, 1287, 2388, 3123
BciT130I	CCWGG	4 cut(s)	1239, 1861, 2915, 3946
BciVI	GTATCC	1 cut(s)	3611
BclI	TGATCA	1 cut(s)	4033
BcnI	CCSGG	3 cut(s)	266, 267, 519
BcoDI	GTCTC	3 cut(s)	2001, 2814, 2945
BfaI	CTAG	7 cut(s)	366, 651, 1964, 2048, 2448, 3039, 3059
BfmI	CTRYAG	9 cut(s)	860, 873, 1740, 2466, 2514, 2901, 3273, 3444, 3586
BfoI	RGCGCY	2 cut(s)	1024, 1547
BfuAI	ACCTGC	3 cut(s)	1744, 3311, 3340
BfuI	GTATCC	1 cut(s)	3611
BglI	GCCNNNNNGGC	1 cut(s)	225
BglII	AGATCT	2 cut(s)	108, 2623
BlnI	CCTAGG	2 cut(s)	1963, 2447
BmcAI	AGTACT	3 cut(s)	149, 3279, 3769
Bme1390I	CCNGG	7 cut(s)	266, 267, 519, 1239, 1861, 2915, 3946
Bme18I	GGWCC	3 cut(s)	193, 1105, 2704
BmeRI	GACNNNNNGTC	1 cut(s)	2878
BmeT110I	CYCGRG	1 cut(s)	265
BmrFI	CCNGG	7 cut(s)	266, 267, 519, 1239, 1861, 2915, 3946
BmrI	ACTGGG	5 cut(s)	14, 94, 1092, 2320, 2595
BmsI	GCATC	8 cut(s)	357, 666, 1399, 1682, 3088, 3421, 3909, 3922
BmuI	ACTGGG	5 cut(s)	14, 94, 1092, 2320, 2595
BpiI	GAAGAC	5 cut(s)	19, 63, 1040, 1356, 2877
BpmI	CTGGAG	3 cut(s)	3023, 3068, 3204
Bpu10I	CCTNAGC	1 cut(s)	1539
Bpu14I	TTCGAA	2 cut(s)	138, 2752
BpuEI	CTTGAG	4 cut(s)	997, 1599, 2246, 3302
BpuMI	CCSGG	3 cut(s)	266, 267, 519
Bsa29I	ATCGAT	2 cut(s)	425, 3654
BsaAI	YACGTR	1 cut(s)	2600
BsaBI	GATNNNNATC	1 cut(s)	4035
BsaWI	WCCGGW	4 cut(s)	63, 164, 718, 1102
BsaXI	ACNNNNNCTCC	8 cut(s)	2293, 2323, 2658, 2688, 2975, 3005, 3857, 3887
Bsc4I	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1007, 1589, 1860, 1904, 2873
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	8 cut(s)	20, 100, 1087, 1751, 2275, 2326, 2590, 4132
Bse3DI	GCAATG	3 cut(s)	508, 1896, 3942
Bse8I	GATNNNNATC	1 cut(s)	4035
BseBI	CCWGG	4 cut(s)	1239, 1861, 2915, 3946
BseCI	ATCGAT	2 cut(s)	425, 3654
BseJI	GATNNNNATC	1 cut(s)	4035
BseLI	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1007, 1589, 1860, 1904, 2873
BseMI	GCAATG	3 cut(s)	508, 1896, 3942
BseMII	CTCAG	9 cut(s)	380, 1116, 1263, 1515, 1530, 1857, 2017, 2232, 3563
BseNI	ACTGG	8 cut(s)	20, 100, 1087, 1751, 2275, 2326, 2590, 4132
BseRI	GAGGAG	3 cut(s)	926, 1541, 3878
BseSI	GKGCMC	6 cut(s)	19, 209, 273, 1898, 2065, 2410
BseXI	GCAGC	9 cut(s)	874, 1030, 1786, 2011, 2014, 2480, 2814, 3829, 3832
BsgI	GTGCAG	3 cut(s)	1037, 3723, 3839
Bsh1285I	CGRYCG	1 cut(s)	719
BshFI	GGCC	9 cut(s)	17, 128, 207, 769, 1225, 1302, 2505, 2774, 3978
BshNI	GGYRCC	1 cut(s)	1241
BshVI	ATCGAT	2 cut(s)	425, 3654
BsiEI	CGRYCG	1 cut(s)	719
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	7 cut(s)	64, 165, 266, 518, 694, 719, 1103
BslFI	GGGAC	7 cut(s)	1370, 1499, 2295, 2308, 2565, 3200, 3762
BslI	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1007, 1589, 1860, 1904, 2873
BsmAI	GTCTC	3 cut(s)	2001, 2814, 2945
BsmFI	GGGAC	7 cut(s)	1370, 1499, 2295, 2308, 2565, 3200, 3762
BsmI	GAATGC	2 cut(s)	741, 2458
BsnI	GGCC	9 cut(s)	17, 128, 207, 769, 1225, 1302, 2505, 2774, 3978
BsoBI	CYCGRG	1 cut(s)	265
Bsp119I	TTCGAA	2 cut(s)	138, 2752
Bsp120I	GGGCCC	2 cut(s)	15, 205
Bsp1407I	TGTACA	2 cut(s)	958, 2107
BspACI	CCGC	8 cut(s)	122, 159, 183, 752, 968, 1042, 1857, 3929
BspANI	GGCC	9 cut(s)	17, 128, 207, 769, 1225, 1302, 2505, 2774, 3978
BspCNI	CTCAG	9 cut(s)	381, 1117, 1264, 1516, 1531, 1858, 2016, 2233, 3562
BspDI	ATCGAT	2 cut(s)	425, 3654
BspHI	TCATGA	2 cut(s)	1261, 3420
BspMAI	CTGCAG	3 cut(s)	864, 877, 2470
BspMI	ACCTGC	3 cut(s)	1744, 3311, 3340
BspPI	GGATC	4 cut(s)	796, 2350, 3364, 3377
BspT104I	TTCGAA	2 cut(s)	138, 2752
BspT107I	GGYRCC	1 cut(s)	1241
BsrDI	GCAATG	3 cut(s)	508, 1896, 3942
BsrFI	RCCGGY	1 cut(s)	693
BsrGI	TGTACA	2 cut(s)	958, 2107
BsrI	ACTGG	8 cut(s)	20, 100, 1087, 1751, 2275, 2326, 2590, 4132
BssAI	RCCGGY	1 cut(s)	693
BssNAI	GTATAC	2 cut(s)	3876, 4109
BssSI	CACGAG	2 cut(s)	954, 1533
BssT1I	CCWWGG	5 cut(s)	178, 1963, 2337, 2447, 2769
Bst1107I	GTATAC	2 cut(s)	3876, 4109
Bst2BI	CACGAG	2 cut(s)	954, 1533
Bst2UI	CCWGG	4 cut(s)	1239, 1861, 2915, 3946
Bst6I	CTCTTC	2 cut(s)	821, 1870
BstAUI	TGTACA	2 cut(s)	958, 2107
BstBAI	YACGTR	1 cut(s)	2600
BstBI	TTCGAA	2 cut(s)	138, 2752
BstC8I	GCNNGC	8 cut(s)	1388, 2285, 2466, 2843, 3143, 3193, 3310, 3394
BstENI	CCTNNNNNAGG	1 cut(s)	1858
BstH2I	RGCGCY	2 cut(s)	1024, 1547
BstHHI	GCGC	3 cut(s)	236, 1023, 1546
BstMAI	GTCTC	3 cut(s)	2001, 2814, 2945
BstMCI	CGRYCG	1 cut(s)	719
BstNI	CCWGG	4 cut(s)	1239, 1861, 2915, 3946
BstNSI	RCATGY	4 cut(s)	2287, 2596, 2781, 3396
BstSCI	CCNGG	7 cut(s)	264, 265, 517, 1237, 1859, 2913, 3944
BstSFI	CTRYAG	9 cut(s)	860, 873, 1740, 2466, 2514, 2901, 3273, 3444, 3586
BstSLI	GKGCMC	6 cut(s)	19, 209, 273, 1898, 2065, 2410
BstV1I	GCAGC	9 cut(s)	874, 1030, 1786, 2011, 2014, 2480, 2814, 3829, 3832
BstV2I	GAAGAC	5 cut(s)	19, 63, 1040, 1356, 2877
BstX2I	RGATCY	4 cut(s)	108, 2342, 2623, 3369
BstYI	RGATCY	4 cut(s)	108, 2342, 2623, 3369
BstZ17I	GTATAC	2 cut(s)	3876, 4109
Bsu15I	ATCGAT	2 cut(s)	425, 3654
BsuI	GTATCC	1 cut(s)	3611
BsuRI	GGCC	9 cut(s)	17, 128, 207, 769, 1225, 1302, 2505, 2774, 3978
BsuTUI	ATCGAT	2 cut(s)	425, 3654
BtgZI	GCGATG	1 cut(s)	3314
BtsI	GCAGTG	3 cut(s)	474, 2574, 4071
BtsIMutI	CAGTG	7 cut(s)	27, 474, 1933, 2333, 2574, 3161, 4071
BveI	ACCTGC	3 cut(s)	1744, 3311, 3340
Cac8I	GCNNGC	8 cut(s)	1388, 2285, 2466, 2843, 3143, 3193, 3310, 3394
CciI	TCATGA	2 cut(s)	1261, 3420
CfoI	GCGC	3 cut(s)	236, 1023, 1546
Cfr10I	RCCGGY	1 cut(s)	693
Cfr9I	CCCGGG	1 cut(s)	265
ClaI	ATCGAT	2 cut(s)	425, 3654
CseI	GACGC	2 cut(s)	959, 3573
Csp6I	GTAC	9 cut(s)	148, 959, 1234, 1793, 2108, 2590, 3278, 3724, 3768
CviQI	GTAC	9 cut(s)	148, 959, 1234, 1793, 2108, 2590, 3278, 3724, 3768
DraI	TTTAAA	2 cut(s)	2893, 3477
DrdI	GACNNNNNNGTC	1 cut(s)	608
DriI	GACNNNNNGTC	1 cut(s)	2878
DseDI	GACNNNNNNGTC	1 cut(s)	608
Eam1104I	CTCTTC	2 cut(s)	821, 1870
Eam1105I	GACNNNNNGTC	1 cut(s)	2878
EarI	CTCTTC	2 cut(s)	821, 1870
EciI	GGCGGA	4 cut(s)	137, 148, 957, 1846
Ecl136II	GAGCTC	4 cut(s)	983, 1759, 3128, 3583
Eco130I	CCWWGG	5 cut(s)	178, 1963, 2337, 2447, 2769
Eco24I	GRGCYC	6 cut(s)	19, 209, 985, 1761, 3130, 3585
Eco47I	GGWCC	3 cut(s)	193, 1105, 2704
Eco53kI	GAGCTC	4 cut(s)	983, 1759, 3128, 3583
Eco57I	CTGAAG	8 cut(s)	845, 902, 2808, 2847, 2889, 3518, 3759, 3792
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	4 cut(s)	983, 1759, 3128, 3583
EcoNI	CCTNNNNNAGG	1 cut(s)	1858
EcoO109I	RGGNCCY	2 cut(s)	16, 206
EcoRI	GAATTC	3 cut(s)	83, 369, 531
EcoRII	CCWGG	4 cut(s)	1237, 1859, 2913, 3944
EcoT14I	CCWWGG	5 cut(s)	178, 1963, 2337, 2447, 2769
EcoT22I	ATGCAT	1 cut(s)	3398
EcoT38I	GRGCYC	6 cut(s)	19, 209, 985, 1761, 3130, 3585
ErhI	CCWWGG	5 cut(s)	178, 1963, 2337, 2447, 2769
FaqI	GGGAC	7 cut(s)	1370, 1499, 2295, 2308, 2565, 3200, 3762
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	3915
FbaI	TGATCA	1 cut(s)	4033
FblI	GTMKAC	2 cut(s)	3875, 4108
FriOI	GRGCYC	6 cut(s)	19, 209, 985, 1761, 3130, 3585
FspBI	CTAG	7 cut(s)	366, 651, 1964, 2048, 2448, 3039, 3059
GlaI	GCGC	3 cut(s)	235, 1022, 1545
GsuI	CTGGAG	3 cut(s)	3023, 3068, 3204
HaeII	RGCGCY	2 cut(s)	1024, 1547
HaeIII	GGCC	9 cut(s)	17, 128, 207, 769, 1225, 1302, 2505, 2774, 3978
HapII	CCGG	7 cut(s)	64, 165, 266, 518, 694, 719, 1103
HgaI	GACGC	2 cut(s)	959, 3573
HhaI	GCGC	3 cut(s)	236, 1023, 1546
Hin6I	GCGC	3 cut(s)	234, 1021, 1544
HinP1I	GCGC	3 cut(s)	234, 1021, 1544
HincII	GTYRAC	2 cut(s)	735, 1291
HindII	GTYRAC	2 cut(s)	735, 1291
HindIII	AAGCTT	1 cut(s)	3407
HpaI	GTTAAC	1 cut(s)	1291
HpaII	CCGG	7 cut(s)	64, 165, 266, 518, 694, 719, 1103
HphI	GGTGA	5 cut(s)	1092, 1270, 1337, 1505, 2998
HpyCH4IV	ACGT	3 cut(s)	1174, 2599, 3201
HpySE526I	ACGT	3 cut(s)	1174, 2599, 3201
HspAI	GCGC	3 cut(s)	234, 1021, 1544
Ksp22I	TGATCA	1 cut(s)	4033
KspAI	GTTAAC	1 cut(s)	1291
LmnI	GCTCC	8 cut(s)	482, 913, 2339, 2732, 3116, 3125, 3242, 3333
Lsp1109I	GCAGC	9 cut(s)	874, 1030, 1786, 2011, 2014, 2480, 2814, 3829, 3832
LweI	GCATC	8 cut(s)	357, 666, 1399, 1682, 3088, 3421, 3909, 3922
MaeI	CTAG	7 cut(s)	366, 651, 1964, 2048, 2448, 3039, 3059
MaeII	ACGT	3 cut(s)	1174, 2599, 3201
MfeI	CAATTG	2 cut(s)	3111, 3120
MflI	RGATCY	4 cut(s)	108, 2342, 2623, 3369
MlyI	GAGTC	8 cut(s)	413, 618, 1308, 1824, 2204, 2237, 3222, 3373
MmeI	TCCRAC	4 cut(s)	84, 282, 1111, 3305
Mph1103I	ATGCAT	1 cut(s)	3398
MroXI	GAANNNNTTC	1 cut(s)	3687
MslI	CAYNNNNRTG	3 cut(s)	746, 1687, 4100
MspA1I	CMGCKG	1 cut(s)	3046
MspI	CCGG	7 cut(s)	64, 165, 266, 518, 694, 719, 1103
MspR9I	CCNGG	7 cut(s)	266, 267, 519, 1239, 1861, 2915, 3946
MunI	CAATTG	2 cut(s)	3111, 3120
Mva1269I	GAATGC	2 cut(s)	741, 2458
MvaI	CCWGG	4 cut(s)	1239, 1861, 2915, 3946
NciI	CCSGG	3 cut(s)	266, 267, 519
NdeI	CATATG	1 cut(s)	3915
NmeAIII	GCCGAG	1 cut(s)	996
NmuCI	GTSAC	8 cut(s)	811, 947, 1325, 2117, 2171, 2595, 3031, 3148
NsiI	ATGCAT	1 cut(s)	3398
NspI	RCATGY	4 cut(s)	2287, 2596, 2781, 3396
NspV	TTCGAA	2 cut(s)	138, 2752
OliI	CACNNNNGTG	1 cut(s)	1687
PaeI	GCATGC	2 cut(s)	2287, 3396
PagI	TCATGA	2 cut(s)	1261, 3420
PaqCI	CACCTGC	2 cut(s)	1744, 3340
PciI	ACATGT	1 cut(s)	2592
PctI	GAATGC	2 cut(s)	741, 2458
PdmI	GAANNNNTTC	1 cut(s)	3687
PflMI	CCANNNNNTGG	2 cut(s)	1007, 1904
PfoI	TCCNGGA	1 cut(s)	2913
PleI	GAGTC	8 cut(s)	412, 617, 1308, 1823, 2204, 2236, 3221, 3373
PpsI	GAGTC	8 cut(s)	412, 617, 1308, 1823, 2204, 2236, 3221, 3373
Ppu21I	YACGTR	1 cut(s)	2600
PscI	ACATGT	1 cut(s)	2592
PshBI	ATTAAT	1 cut(s)	618
PsiI	TTATAA	2 cut(s)	1230, 1643
Psp124BI	GAGCTC	4 cut(s)	985, 1761, 3130, 3585
Psp1406I	AACGTT	1 cut(s)	3201
Psp6I	CCWGG	4 cut(s)	1237, 1859, 2913, 3944
PspGI	CCWGG	4 cut(s)	1237, 1859, 2913, 3944
PspOMI	GGGCCC	2 cut(s)	15, 205
PstI	CTGCAG	3 cut(s)	864, 877, 2470
PsuI	RGATCY	4 cut(s)	108, 2342, 2623, 3369
PvuII	CAGCTG	1 cut(s)	3046
RsaI	GTAC	9 cut(s)	149, 960, 1235, 1794, 2109, 2591, 3279, 3725, 3769
RsaNI	GTAC	9 cut(s)	148, 959, 1234, 1793, 2108, 2590, 3278, 3724, 3768
RseI	CAYNNNNRTG	3 cut(s)	746, 1687, 4100
SacI	GAGCTC	4 cut(s)	985, 1761, 3130, 3585
ScaI	AGTACT	3 cut(s)	149, 3279, 3769
SchI	GAGTC	8 cut(s)	413, 618, 1308, 1824, 2204, 2237, 3222, 3373
ScrFI	CCNGG	7 cut(s)	266, 267, 519, 1239, 1861, 2915, 3946
SfaNI	GCATC	8 cut(s)	357, 666, 1399, 1682, 3088, 3421, 3909, 3922
SfcI	CTRYAG	9 cut(s)	860, 873, 1740, 2466, 2514, 2901, 3273, 3444, 3586
SfuI	TTCGAA	2 cut(s)	138, 2752
SinI	GGWCC	3 cut(s)	193, 1105, 2704
SmaI	CCCGGG	1 cut(s)	267
SmiMI	CAYNNNNRTG	3 cut(s)	746, 1687, 4100
SmlI	CTYRAG	4 cut(s)	976, 1614, 2225, 3281
SmoI	CTYRAG	4 cut(s)	976, 1614, 2225, 3281
SphI	GCATGC	2 cut(s)	2287, 3396
SsiI	CCGC	8 cut(s)	122, 159, 183, 752, 968, 1042, 1857, 3929
SspI	AATATT	4 cut(s)	1192, 1507, 2356, 3511
SspMI	CTAG	7 cut(s)	366, 651, 1964, 2048, 2448, 3039, 3059
SstI	GAGCTC	4 cut(s)	985, 1761, 3130, 3585
StyD4I	CCNGG	7 cut(s)	264, 265, 517, 1237, 1859, 2913, 3944
StyI	CCWWGG	5 cut(s)	178, 1963, 2337, 2447, 2769
TaiI	ACGT	3 cut(s)	1177, 2602, 3204
TatI	WGTACW	6 cut(s)	147, 958, 2107, 3277, 3723, 3767
TauI	GCSGC	1 cut(s)	754
TscAI	CASTG	7 cut(s)	27, 474, 1933, 2333, 2574, 3168, 4071
TseFI	GTSAC	8 cut(s)	811, 947, 1325, 2117, 2171, 2595, 3031, 3148
TseI	GCWGC	9 cut(s)	862, 1018, 1774, 2024, 2027, 2468, 2802, 3820, 3842
Tsp45I	GTSAC	8 cut(s)	811, 947, 1325, 2117, 2171, 2595, 3031, 3148
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	7 cut(s)	27, 474, 1933, 2333, 2574, 3168, 4071
Van91I	CCANNNNNTGG	2 cut(s)	1007, 1904
VneI	GTGCAC	2 cut(s)	2061, 2406
VpaK11BI	GGWCC	3 cut(s)	193, 1105, 2704
VspI	ATTAAT	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	1858
XapI	RAATTY	8 cut(s)	83, 369, 531, 630, 2909, 3340, 3480, 3849
XbaI	TCTAGA	3 cut(s)	365, 3038, 3058
XceI	RCATGY	4 cut(s)	2287, 2596, 2781, 3396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1758
XmaI	CCCGGG	1 cut(s)	265
XmaJI	CCTAGG	2 cut(s)	1963, 2447
XmiI	GTMKAC	2 cut(s)	3875, 4108
XmnI	GAANNNNTTC	1 cut(s)	3687
XspI	CTAG	7 cut(s)	366, 651, 1964, 2048, 2448, 3039, 3059
ZrmI	AGTACT	3 cut(s)	149, 3279, 3769
Zsp2I	ATGCAT	1 cut(s)	3398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.