Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Reverse (-)

13910716 .. 13915420

Gene Structure 4705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4164 bp

ATGAATACCCAACGGGCCCCACTGGTCTTCACAAAACAGCCCTACATTGAACAAGAAGACCACCGGAGAATAGCCCAATGGGAATTCAATGCTCTTTCCCAGTCGGAGATCTCCAAAATGGCGGAGGCCCAAATCTTCGAAGGCAAGTACTACGATTCCGCCACCGGAAAACCCATCCAAGGCGGGTTACTGGACCCCAGATTGGGCCCTGCGAATCGCCAGAGTGGCAACTGCGCCACTTGCTCTGCAAAACTCTCCGACTGCCCGGGGCACTTTGGGTATTTCATGCTTTCCCTCCCTGTTTTCAATGTTGGGTATTTGAATGTGGTTGTGGACATTTTGAAGTGCATCTGTAAAATGTGCTCTAGAATTCTTTTGGATGAGAAACTGAGAAGCAAGAAGGAGTCGATGAAGGACATGAAATCGATAGTGAAGGAGTGTGTTAAGCCCTTGACGAATCATAGAGCCGTGGAGTGCTCCCATTGTGGGTATACAAATGGCAATGTGAGAAGGGTTCCGGGGGATGTGGGAATTCAACACGATCATTCGGAACGAACTGTTAATGGTGTTGTGGTAGATGAGTATAAGTCGGCGATACTTGACAAGGGAGTCATTAATATGCAACAAATTTTTTTGCTTGACCCTGCTAGAGTTTATTCTCTGTTTAGGAAGATGCTTGATGTGGATTGCCGGTTTCTGTGTCTTAAAACTCGACCGGAGAATCTCCTGTTGACTTGCATTCTTGTGCCGCCGATAGCTATTCGGCCTTCGGTTCTTGTGGGTGGATCACAGAGTAATGAGGATGATGTGACTGTGAGGCTGAAGAGGATTATTCAAGCAAATGCGAAACTTCGACTGCAGCTATCATCTGCAGGAAGTTCCTCTGCTGTGTCATTGTCTTGTTGGGAGGAGCTTCAGATTGAGGTTGCACAGTATATAAATAGTGACGCTCGTGTACACCTTCCGCCGAGCTTGAGAGCTCAACAACCTACCAAGCCATTGAGTGGTTTGGTGCAGCGCCTCAAAGGGAAGACGGGGCGGTTTCGTGGTACTTTGAGTGGGAAGCGTGTTGAATATACTGGGAGAAGTGTTATATCACCGGACCCTAATCTGAAAATTACTGAGGTTGGAATCCCTATGGAAATGGCTACAATTTTGAGTTATCCAGAACGTGTTTCCAAGCATAATATTGACAAGTTGAGGCTGTGTGTTAGTAATGGGCCTTATAAGTACCCAGGTGCCAAAATGTTGAGAAATCATGACGGCTCTGAGTTCACCTTGAAGGTTAACAGACAGGGCCGTGCTCGTGGACTCAAATGTGGTGACATAGTTGATCGGCATTTAGAAGACGGGGACATTGTTCTTTTCAACAGGCAACCGAGCTTGCATCGGATGTCTGTCATGTGTCATAGGGCAAGGATTATGCCACATTCGAGGACATTGAGGTTTAATGAATCTGTTTGCAACCCGTATAATGCTGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAAACTGAGGAGGCTCGTGCTGAGGCGCTTATGTTGATGGGGGTGCATAATAATCTATGCACTCCGAAAAATGGAGAGATTTTGGTTGCCTCCACTCAAGATTTTCTAACTTCTTCTTTCCTTATAACAAGGAAGGACACATTTTATGACCGTGCATCTTTTTCACTCCTGTGTTCGTATATGGTTGATGGCAAGGCTTCTGTTGATTTGCCAACACCTGCTGTAGTTAAGCCAGTAGAGCTCTGGACAGGTAAGCAGCTATTTAATGTTTTAGTACGCCCAAACTCAAATGTGAGAGTCTATCTAAATCTTATTGTTAGGGAGAAATCTTACACCTCCGCCAGGACTGAGGATGGAAGAGAAACAGAAGCAATGTGCCCAAACGATGGTTTTGTCTATTTTCGCAACAGTGAGCTATTATCTGGGCAACTTGGGAAGGCTACCCTAGGAAATGGCAATAAGGATGGACTTTACTCTGTTCTTCTCAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGAATCGCCTAGCTAAATTAAGTGCACGGTGGATTGGTAATCATGGATTCTCGATTGGGCTTAGTGATGTACAACCAAGTGACAATCTGTATGATGAGAAAGAAAAAATCATCAAGGAAGGTTATAGCAAATGTGACAGCCAGATAGACTTGTATAATCAACGAAAGCTGGAATCACTTGAATCACTTGAGTCTGGGATTTCTGAGGTGTTAAATAAAATTAGAGATCAAACTGGAAAGCTGTGCATGCAAAAGCTACATTGGAGAAACAGTCCCTTGATCATGTCCCAGTGTGGCTCCAAGGGATCTGCTATCAATATTAGCCAGATGGTTGCCTGTGTTGGTCAGCAATCTGTTGGTGGTCGCCGTGCACCTGATGGTTTCATAGATCGAAGCCTTCCACACTTCCCTAGGAATGCAAAAATGCCTGCAGCTAAAGGCTTTGTAGCTAATTCCTTTTATAGTGGCCTGACACCTACAGAGTTTTTCTTTCATACAATGGGAGGGCGAGAGGGACTTGTTGATACAGCAGTGAAAACTGCTGAAACTGGGTACATGTCACGTAGATTGTCAAAGGTTTTAGAAGATCTCGCCATCCACTATGATAAAACAGTTCGGGTTGCCAATGGAGGTATAGTTCAGTTCTGTTATGGGGATGACGGTATGGACCCTGCTATGATGGAAGGGAAAAGTGGAGCACCGATAGACTTATTTCGAATGTTTTTGAAAGCCAAGGCCACATGCCCTGCTGAAGAAAATGATAGCAGCCTGTCTCCTGCACAAGTGTCTGAAGTAGTGAGAAGCAGGCTTTCAGAACAAGATATGATTCCTGAAGATGGTTTGTCTATGTGTTTTAAAAGTTCTATAGAGAAATTCCTGGATGAATATGGAAAAACACAAAGAAAAACACAGGAGACTTTTTTGTTGAATCAAAGTTCTGGTTGGGAGGTGAAGTCTGCTATTCTGGAGAAGATTGTCAAAAATATATCTGGTGTCACTTCTAGACAGCTGGAGGTTTTTCTAGATACTTGTATATCTCGTTATCATTCAAAAAGAATTGATCCTGGAACGGCAATTGGAGCAATTGGAGCTCAAAGTATTGGCGAGCCTGTGACACAGATGACACTGAAAACCTTTCACTTCGCTGGAGTTGCAAGCATGAACGTTACACTTGGAGTCCCTCGGATAAAGGAGATAATAGATGGAGCAAAAAATATCAAGACACCCATCATCACTACAGTACTTGAGTGTGATAATAATGCGATGATTGCACGCATGGTGGCAGGTCGGATTGGGAGCACAAATTTAGGGCAGGTGGCTAAGAGTATAGGGATCCTAATGACTCCAAGACAGGCATGCATAGTCATCAAGCTTGATATGGTCATGATTCGAGATGCACAGTTGTCTATAGATGTTGATGTTGTGAAAGAATCAATTTTAAAAGTTCCCAGAATCAAACTGAAGCATGAGAATATTCAAGTTCCAGATAACGAAACTTTGGAAGTGTATTCTCCGGACAAGGATAGACGCAGACTTTATTTTGAGCTCTACAGATTAAAGAGTATCCTCCCCAATGTTACAGTAAGGGGCATAACGACAGTTCAGCGTGTTGTCATTGATGAAAGTGATGTGAAAAAGGATAAAGAAGATGTTCAAGTTAAAGGTGCAGATGTTGTTGGTAAGAAGTACAGGCTGTTTGCTGAAGGCAAGGGACTTCTGGCAGTAATGAGCACCGAAGGAGTAGATGGTTGTAAAACCACAAGTAATGACATTATTGAAGTGCAGCAGACACTTGGGATTGAAGCTGCGAGAATTTCTATCATAGAGGAGATAAAGTATACTATGAAGCAACATGGAATGAACATAGATGATCGCCATATGATGCTTTTAGCGGATGCAATGACTTCTAGGGGTCAAGTTCTTGGAATGACGAGATTTGGCCTTCAAAAGATGGACAAAAGTGTTTTAATGGGTGCTTCATTTGAGCGAACAGATGATCATCTGTTTAATGCTTGTGTGAAGGGGGCAGTGGACAAAATTGAAGGAGTAAGTGAAAGCATAATCATGGGTATACCAATGCCGATAGGAACTGGAATGTTCAAAGTTAAACACATCCTCCCTACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1387

Amino Acids

154.15

Weight (kDa)

8.87

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	22 - 352	5.2e-69	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	354 - 520	1e-71	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	523 - 702	2.6e-37	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	732 - 827	4e-28	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	834 - 1333	3.3e-86	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1227, 1640
AarI	CACCTGC	2 cut(s)	1741, 3337
AasI	GACNNNNNNGTC	1 cut(s)	608
Acc36I	ACCTGC	3 cut(s)	1741, 3308, 3337
AccB1I	GGYRCC	1 cut(s)	1238
AccB7I	CCANNNNNTGG	2 cut(s)	1004, 1901
AccI	GTMKAC	3 cut(s)	491, 3872, 4105
AccIII	TCCGGA	1 cut(s)	3547
AciI	CCGC	8 cut(s)	122, 159, 183, 749, 965, 1039, 1854, 3926
AclI	AACGTT	1 cut(s)	3198
AclWI	GGATC	5 cut(s)	793, 2347, 3089, 3361, 3374
AcsI	RAATTY	7 cut(s)	83, 369, 531, 627, 2906, 3337, 3846
AcuI	CTGAAG	7 cut(s)	842, 899, 2805, 2844, 2886, 3515, 3756
AfaI	GTAC	9 cut(s)	149, 957, 1051, 1232, 1791, 2106, 2588, 3276, 3722
AfiI	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
AflIII	ACRYGT	2 cut(s)	1171, 2589
AjnI	CCWGG	4 cut(s)	1234, 1856, 2910, 3097
AleI	CACNNNNGTG	1 cut(s)	1684
AloI	GAACNNNNNNTCC	2 cut(s)	2655, 2687
Alw26I	GTCTC	3 cut(s)	1998, 2811, 2942
Alw44I	GTGCAC	2 cut(s)	2058, 2403
AlwI	GGATC	5 cut(s)	793, 2347, 3089, 3361, 3374
Ama87I	CYCGRG	1 cut(s)	265
Aor13HI	TCCGGA	1 cut(s)	3547
AoxI	GGCC	9 cut(s)	15, 126, 205, 764, 1220, 1297, 2500, 2769, 3973
ApaI	GGGCCC	2 cut(s)	19, 209
ApaLI	GTGCAC	2 cut(s)	2058, 2403
ApeKI	GCWGC	9 cut(s)	859, 1015, 1771, 2021, 2024, 2465, 2799, 3817, 3839
ApoI	RAATTY	7 cut(s)	83, 369, 531, 627, 2906, 3337, 3846
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	3684
AspA2I	CCTAGG	2 cut(s)	1960, 2444
AspLEI	GCGC	3 cut(s)	236, 1020, 1543
AsuC2I	CCSGG	3 cut(s)	266, 267, 519
AsuHPI	GGTGA	5 cut(s)	1089, 1267, 1334, 1502, 2995
AsuII	TTCGAA	2 cut(s)	138, 2749
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	3 cut(s)	193, 1102, 2701
AvrII	CCTAGG	2 cut(s)	1960, 2444
BaeGI	GKGCMC	6 cut(s)	19, 209, 273, 1895, 2062, 2407
BaeI	ACNNNNGTAYC	2 cut(s)	2550, 2583
BamHI	GGATCC	1 cut(s)	3366
BanI	GGYRCC	1 cut(s)	1238
BanII	GRGCYC	6 cut(s)	19, 209, 982, 1758, 3127, 3582
BauI	CACGAG	3 cut(s)	951, 1305, 1530
BbsI	GAAGAC	4 cut(s)	19, 63, 1037, 1353
BbvCI	CCTCAGC	1 cut(s)	1536
BbvI	GCAGC	9 cut(s)	871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
BceAI	ACGGC	5 cut(s)	452, 1279, 1284, 2385, 3120
BciT130I	CCWGG	4 cut(s)	1236, 1858, 2912, 3099
BciVI	GTATCC	1 cut(s)	3608
BclI	TGATCA	2 cut(s)	2313, 4030
BcnI	CCSGG	3 cut(s)	266, 267, 519
BcoDI	GTCTC	3 cut(s)	1998, 2811, 2942
BfaI	CTAG	8 cut(s)	366, 648, 1961, 2045, 2445, 3036, 3056, 3942
BfmI	CTRYAG	9 cut(s)	857, 870, 1737, 2463, 2511, 2898, 3270, 3441, 3583
BfoI	RGCGCY	2 cut(s)	1021, 1544
BfuAI	ACCTGC	3 cut(s)	1741, 3308, 3337
BfuI	GTATCC	1 cut(s)	3608
BglI	GCCNNNNNGGC	1 cut(s)	225
BglII	AGATCT	2 cut(s)	108, 2620
BlnI	CCTAGG	2 cut(s)	1960, 2444
BmcAI	AGTACT	2 cut(s)	149, 3276
Bme1390I	CCNGG	7 cut(s)	266, 267, 519, 1236, 1858, 2912, 3099
Bme18I	GGWCC	3 cut(s)	193, 1102, 2701
BmeT110I	CYCGRG	1 cut(s)	265
BmrFI	CCNGG	7 cut(s)	266, 267, 519, 1236, 1858, 2912, 3099
BmrI	ACTGGG	4 cut(s)	94, 1089, 2317, 2592
BmsI	GCATC	7 cut(s)	357, 663, 1396, 1679, 3418, 3906, 3919
BmuI	ACTGGG	4 cut(s)	94, 1089, 2317, 2592
BpiI	GAAGAC	4 cut(s)	19, 63, 1037, 1353
BpmI	CTGGAG	3 cut(s)	3020, 3065, 3201
Bpu10I	CCTNAGC	1 cut(s)	1536
Bpu14I	TTCGAA	2 cut(s)	138, 2749
BpuEI	CTTGAG	4 cut(s)	994, 1596, 2243, 3299
BpuMI	CCSGG	3 cut(s)	266, 267, 519
Bsa29I	ATCGAT	1 cut(s)	425
BsaAI	YACGTR	1 cut(s)	2597
BsaBI	GATNNNNATC	1 cut(s)	4032
BsaWI	WCCGGW	5 cut(s)	63, 164, 715, 1099, 3547
Bsc4I	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
Bse118I	RCCGGY	1 cut(s)	690
Bse1I	ACTGG	9 cut(s)	27, 100, 195, 1084, 1748, 2272, 2323, 2587, 4129
Bse3DI	GCAATG	3 cut(s)	508, 1893, 3939
Bse8I	GATNNNNATC	1 cut(s)	4032
BseAI	TCCGGA	1 cut(s)	3547
BseBI	CCWGG	4 cut(s)	1236, 1858, 2912, 3099
BseCI	ATCGAT	1 cut(s)	425
BseJI	GATNNNNATC	1 cut(s)	4032
BseLI	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
BseMI	GCAATG	3 cut(s)	508, 1893, 3939
BseMII	CTCAG	8 cut(s)	380, 1113, 1260, 1512, 1527, 1854, 2014, 2229
BseNI	ACTGG	9 cut(s)	27, 100, 195, 1084, 1748, 2272, 2323, 2587, 4129
BseRI	GAGGAG	3 cut(s)	923, 1538, 3875
BseSI	GKGCMC	6 cut(s)	19, 209, 273, 1895, 2062, 2407
BseXI	GCAGC	9 cut(s)	871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
BsgI	GTGCAG	4 cut(s)	1034, 2796, 3720, 3836
Bsh1285I	CGRYCG	1 cut(s)	716
BshFI	GGCC	9 cut(s)	17, 128, 207, 766, 1222, 1299, 2502, 2771, 3975
BshNI	GGYRCC	1 cut(s)	1238
BshVI	ATCGAT	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	8 cut(s)	64, 165, 266, 518, 691, 716, 1100, 3548
BslFI	GGGAC	7 cut(s)	1367, 1496, 2292, 2305, 2562, 3197, 3759
BslI	CCNNNNNNNGG	9 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901, 2870
BsmAI	GTCTC	3 cut(s)	1998, 2811, 2942
BsmFI	GGGAC	7 cut(s)	1367, 1496, 2292, 2305, 2562, 3197, 3759
BsmI	GAATGC	2 cut(s)	738, 2455
BsnI	GGCC	9 cut(s)	17, 128, 207, 766, 1222, 1299, 2502, 2771, 3975
BsoBI	CYCGRG	1 cut(s)	265
Bsp119I	TTCGAA	2 cut(s)	138, 2749
Bsp120I	GGGCCC	2 cut(s)	15, 205
Bsp13I	TCCGGA	1 cut(s)	3547
Bsp1407I	TGTACA	2 cut(s)	955, 2104
BspACI	CCGC	8 cut(s)	122, 159, 183, 749, 965, 1039, 1854, 3926
BspANI	GGCC	9 cut(s)	17, 128, 207, 766, 1222, 1299, 2502, 2771, 3975
BspCNI	CTCAG	8 cut(s)	381, 1114, 1261, 1513, 1528, 1855, 2013, 2230
BspDI	ATCGAT	1 cut(s)	425
BspEI	TCCGGA	1 cut(s)	3547
BspHI	TCATGA	2 cut(s)	1258, 3417
BspMAI	CTGCAG	3 cut(s)	861, 874, 2467
BspMI	ACCTGC	3 cut(s)	1741, 3308, 3337
BspPI	GGATC	5 cut(s)	793, 2347, 3089, 3361, 3374
BspT104I	TTCGAA	2 cut(s)	138, 2749
BspT107I	GGYRCC	1 cut(s)	1238
BsrDI	GCAATG	3 cut(s)	508, 1893, 3939
BsrFI	RCCGGY	1 cut(s)	690
BsrGI	TGTACA	2 cut(s)	955, 2104
BsrI	ACTGG	9 cut(s)	27, 100, 195, 1084, 1748, 2272, 2323, 2587, 4129
BssAI	RCCGGY	1 cut(s)	690
BssNAI	GTATAC	3 cut(s)	492, 3873, 4106
BssSI	CACGAG	3 cut(s)	951, 1305, 1530
BssT1I	CCWWGG	5 cut(s)	178, 1960, 2334, 2444, 2766
Bst1107I	GTATAC	3 cut(s)	492, 3873, 4106
Bst2BI	CACGAG	3 cut(s)	951, 1305, 1530
Bst2UI	CCWGG	4 cut(s)	1236, 1858, 2912, 3099
Bst6I	CTCTTC	2 cut(s)	818, 1867
BstAUI	TGTACA	2 cut(s)	955, 2104
BstBAI	YACGTR	1 cut(s)	2597
BstBI	TTCGAA	2 cut(s)	138, 2749
BstC8I	GCNNGC	8 cut(s)	1385, 2282, 2463, 2840, 3140, 3190, 3307, 3391
BstDSI	CCRYGG	1 cut(s)	468
BstENI	CCTNNNNNAGG	1 cut(s)	1855
BstH2I	RGCGCY	2 cut(s)	1021, 1544
BstHHI	GCGC	3 cut(s)	236, 1020, 1543
BstMAI	GTCTC	3 cut(s)	1998, 2811, 2942
BstMCI	CGRYCG	1 cut(s)	716
BstNI	CCWGG	4 cut(s)	1236, 1858, 2912, 3099
BstNSI	RCATGY	4 cut(s)	2284, 2593, 2778, 3393
BstSCI	CCNGG	7 cut(s)	264, 265, 517, 1234, 1856, 2910, 3097
BstSFI	CTRYAG	9 cut(s)	857, 870, 1737, 2463, 2511, 2898, 3270, 3441, 3583
BstSLI	GKGCMC	6 cut(s)	19, 209, 273, 1895, 2062, 2407
BstV1I	GCAGC	9 cut(s)	871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
BstV2I	GAAGAC	4 cut(s)	19, 63, 1037, 1353
BstX2I	RGATCY	4 cut(s)	108, 2339, 2620, 3366
BstYI	RGATCY	4 cut(s)	108, 2339, 2620, 3366
BstZ17I	GTATAC	3 cut(s)	492, 3873, 4106
Bsu15I	ATCGAT	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	3608
BsuRI	GGCC	9 cut(s)	17, 128, 207, 766, 1222, 1299, 2502, 2771, 3975
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	3311
BtsI	GCAGTG	2 cut(s)	2571, 4068
BtsIMutI	CAGTG	6 cut(s)	20, 1930, 2330, 2571, 3158, 4068
BveI	ACCTGC	3 cut(s)	1741, 3308, 3337
Cac8I	GCNNGC	8 cut(s)	1385, 2282, 2463, 2840, 3140, 3190, 3307, 3391
CciI	TCATGA	2 cut(s)	1258, 3417
CfoI	GCGC	3 cut(s)	236, 1020, 1543
Cfr10I	RCCGGY	1 cut(s)	690
Cfr9I	CCCGGG	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	425
CseI	GACGC	2 cut(s)	956, 3570
Csp6I	GTAC	9 cut(s)	148, 956, 1050, 1231, 1790, 2105, 2587, 3275, 3721
CviQI	GTAC	9 cut(s)	148, 956, 1050, 1231, 1790, 2105, 2587, 3275, 3721
DraI	TTTAAA	2 cut(s)	2890, 3474
DrdI	GACNNNNNNGTC	1 cut(s)	608
DseDI	GACNNNNNNGTC	1 cut(s)	608
Eam1104I	CTCTTC	2 cut(s)	818, 1867
EarI	CTCTTC	2 cut(s)	818, 1867
EciI	GGCGGA	4 cut(s)	137, 148, 954, 1843
Ecl136II	GAGCTC	4 cut(s)	980, 1756, 3125, 3580
Eco130I	CCWWGG	5 cut(s)	178, 1960, 2334, 2444, 2766
Eco24I	GRGCYC	6 cut(s)	19, 209, 982, 1758, 3127, 3582
Eco47I	GGWCC	3 cut(s)	193, 1102, 2701
Eco53kI	GAGCTC	4 cut(s)	980, 1756, 3125, 3580
Eco57I	CTGAAG	7 cut(s)	842, 899, 2805, 2844, 2886, 3515, 3756
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	4 cut(s)	980, 1756, 3125, 3580
EcoNI	CCTNNNNNAGG	1 cut(s)	1855
EcoO109I	RGGNCCY	2 cut(s)	16, 206
EcoRI	GAATTC	3 cut(s)	83, 369, 531
EcoRII	CCWGG	4 cut(s)	1234, 1856, 2910, 3097
EcoT14I	CCWWGG	5 cut(s)	178, 1960, 2334, 2444, 2766
EcoT22I	ATGCAT	1 cut(s)	3395
EcoT38I	GRGCYC	6 cut(s)	19, 209, 982, 1758, 3127, 3582
ErhI	CCWWGG	5 cut(s)	178, 1960, 2334, 2444, 2766
FaqI	GGGAC	7 cut(s)	1367, 1496, 2292, 2305, 2562, 3197, 3759
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	3912
FbaI	TGATCA	2 cut(s)	2313, 4030
FblI	GTMKAC	3 cut(s)	491, 3872, 4105
FriOI	GRGCYC	6 cut(s)	19, 209, 982, 1758, 3127, 3582
FspBI	CTAG	8 cut(s)	366, 648, 1961, 2045, 2445, 3036, 3056, 3942
GlaI	GCGC	3 cut(s)	235, 1019, 1542
GsuI	CTGGAG	3 cut(s)	3020, 3065, 3201
HaeII	RGCGCY	2 cut(s)	1021, 1544
HaeIII	GGCC	9 cut(s)	17, 128, 207, 766, 1222, 1299, 2502, 2771, 3975
HapII	CCGG	8 cut(s)	64, 165, 266, 518, 691, 716, 1100, 3548
HgaI	GACGC	2 cut(s)	956, 3570
HhaI	GCGC	3 cut(s)	236, 1020, 1543
Hin6I	GCGC	3 cut(s)	234, 1018, 1541
HinP1I	GCGC	3 cut(s)	234, 1018, 1541
HincII	GTYRAC	2 cut(s)	732, 1288
HindII	GTYRAC	2 cut(s)	732, 1288
HindIII	AAGCTT	1 cut(s)	3404
HpaI	GTTAAC	1 cut(s)	1288
HpaII	CCGG	8 cut(s)	64, 165, 266, 518, 691, 716, 1100, 3548
HphI	GGTGA	5 cut(s)	1089, 1267, 1334, 1502, 2995
HpyCH4IV	ACGT	3 cut(s)	1171, 2596, 3198
HpySE526I	ACGT	3 cut(s)	1171, 2596, 3198
HspAI	GCGC	3 cut(s)	234, 1018, 1541
Kpn2I	TCCGGA	1 cut(s)	3547
Ksp22I	TGATCA	2 cut(s)	2313, 4030
KspAI	GTTAAC	1 cut(s)	1288
LmnI	GCTCC	8 cut(s)	482, 910, 2336, 2729, 3113, 3122, 3239, 3330
Lsp1109I	GCAGC	9 cut(s)	871, 1027, 1783, 2008, 2011, 2477, 2811, 3826, 3829
LweI	GCATC	7 cut(s)	357, 663, 1396, 1679, 3418, 3906, 3919
MaeI	CTAG	8 cut(s)	366, 648, 1961, 2045, 2445, 3036, 3056, 3942
MaeII	ACGT	3 cut(s)	1171, 2596, 3198
MfeI	CAATTG	2 cut(s)	3108, 3117
MflI	RGATCY	4 cut(s)	108, 2339, 2620, 3366
MlyI	GAGTC	7 cut(s)	413, 618, 1305, 1821, 2234, 3219, 3370
MmeI	TCCRAC	4 cut(s)	84, 282, 1108, 3302
Mph1103I	ATGCAT	1 cut(s)	3395
MroI	TCCGGA	1 cut(s)	3547
MroXI	GAANNNNTTC	1 cut(s)	3684
MslI	CAYNNNNRTG	4 cut(s)	617, 743, 1684, 4097
MspA1I	CMGCKG	1 cut(s)	3043
MspI	CCGG	8 cut(s)	64, 165, 266, 518, 691, 716, 1100, 3548
MspR9I	CCNGG	7 cut(s)	266, 267, 519, 1236, 1858, 2912, 3099
MunI	CAATTG	2 cut(s)	3108, 3117
Mva1269I	GAATGC	2 cut(s)	738, 2455
MvaI	CCWGG	4 cut(s)	1236, 1858, 2912, 3099
NciI	CCSGG	3 cut(s)	266, 267, 519
NdeI	CATATG	1 cut(s)	3912
NmeAIII	GCCGAG	1 cut(s)	993
NmuCI	GTSAC	8 cut(s)	808, 944, 1322, 2114, 2168, 2592, 3028, 3145
NsiI	ATGCAT	1 cut(s)	3395
NspI	RCATGY	4 cut(s)	2284, 2593, 2778, 3393
NspV	TTCGAA	2 cut(s)	138, 2749
OliI	CACNNNNGTG	1 cut(s)	1684
PaeI	GCATGC	2 cut(s)	2284, 3393
PagI	TCATGA	2 cut(s)	1258, 3417
PaqCI	CACCTGC	2 cut(s)	1741, 3337
PciI	ACATGT	1 cut(s)	2589
PctI	GAATGC	2 cut(s)	738, 2455
PdmI	GAANNNNTTC	1 cut(s)	3684
PflMI	CCANNNNNTGG	2 cut(s)	1004, 1901
PfoI	TCCNGGA	2 cut(s)	2910, 3097
PleI	GAGTC	7 cut(s)	412, 617, 1305, 1820, 2233, 3218, 3370
PpsI	GAGTC	7 cut(s)	412, 617, 1305, 1820, 2233, 3218, 3370
Ppu21I	YACGTR	1 cut(s)	2597
PscI	ACATGT	1 cut(s)	2589
PshBI	ATTAAT	1 cut(s)	615
PsiI	TTATAA	2 cut(s)	1227, 1640
Psp124BI	GAGCTC	4 cut(s)	982, 1758, 3127, 3582
Psp1406I	AACGTT	1 cut(s)	3198
Psp6I	CCWGG	4 cut(s)	1234, 1856, 2910, 3097
PspGI	CCWGG	4 cut(s)	1234, 1856, 2910, 3097
PspOMI	GGGCCC	2 cut(s)	15, 205
PstI	CTGCAG	3 cut(s)	861, 874, 2467
PsuI	RGATCY	4 cut(s)	108, 2339, 2620, 3366
PvuII	CAGCTG	1 cut(s)	3043
RsaI	GTAC	9 cut(s)	149, 957, 1051, 1232, 1791, 2106, 2588, 3276, 3722
RsaNI	GTAC	9 cut(s)	148, 956, 1050, 1231, 1790, 2105, 2587, 3275, 3721
RseI	CAYNNNNRTG	4 cut(s)	617, 743, 1684, 4097
SacI	GAGCTC	4 cut(s)	982, 1758, 3127, 3582
ScaI	AGTACT	2 cut(s)	149, 3276
SchI	GAGTC	7 cut(s)	413, 618, 1305, 1821, 2234, 3219, 3370
ScrFI	CCNGG	7 cut(s)	266, 267, 519, 1236, 1858, 2912, 3099
SfaNI	GCATC	7 cut(s)	357, 663, 1396, 1679, 3418, 3906, 3919
SfcI	CTRYAG	9 cut(s)	857, 870, 1737, 2463, 2511, 2898, 3270, 3441, 3583
SfuI	TTCGAA	2 cut(s)	138, 2749
SinI	GGWCC	3 cut(s)	193, 1102, 2701
SmaI	CCCGGG	1 cut(s)	267
SmiMI	CAYNNNNRTG	4 cut(s)	617, 743, 1684, 4097
SmlI	CTYRAG	4 cut(s)	973, 1611, 2222, 3278
SmoI	CTYRAG	4 cut(s)	973, 1611, 2222, 3278
SphI	GCATGC	2 cut(s)	2284, 3393
SsiI	CCGC	8 cut(s)	122, 159, 183, 749, 965, 1039, 1854, 3926
SspI	AATATT	4 cut(s)	1189, 1504, 2353, 3508
SspMI	CTAG	8 cut(s)	366, 648, 1961, 2045, 2445, 3036, 3056, 3942
SstI	GAGCTC	4 cut(s)	982, 1758, 3127, 3582
StyD4I	CCNGG	7 cut(s)	264, 265, 517, 1234, 1856, 2910, 3097
StyI	CCWWGG	5 cut(s)	178, 1960, 2334, 2444, 2766
TaiI	ACGT	3 cut(s)	1174, 2599, 3201
TatI	WGTACW	5 cut(s)	147, 955, 2104, 3274, 3720
TauI	GCSGC	1 cut(s)	751
TscAI	CASTG	6 cut(s)	27, 1930, 2330, 2571, 3165, 4068
TseFI	GTSAC	8 cut(s)	808, 944, 1322, 2114, 2168, 2592, 3028, 3145
TseI	GCWGC	9 cut(s)	859, 1015, 1771, 2021, 2024, 2465, 2799, 3817, 3839
Tsp45I	GTSAC	8 cut(s)	808, 944, 1322, 2114, 2168, 2592, 3028, 3145
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	6 cut(s)	27, 1930, 2330, 2571, 3165, 4068
Van91I	CCANNNNNTGG	2 cut(s)	1004, 1901
VneI	GTGCAC	2 cut(s)	2058, 2403
VpaK11BI	GGWCC	3 cut(s)	193, 1102, 2701
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	1855
XapI	RAATTY	7 cut(s)	83, 369, 531, 627, 2906, 3337, 3846
XbaI	TCTAGA	3 cut(s)	365, 3035, 3055
XceI	RCATGY	4 cut(s)	2284, 2593, 2778, 3393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1755
XmaI	CCCGGG	1 cut(s)	265
XmaJI	CCTAGG	2 cut(s)	1960, 2444
XmiI	GTMKAC	3 cut(s)	491, 3872, 4105
XmnI	GAANNNNTTC	1 cut(s)	3684
XspI	CTAG	8 cut(s)	366, 648, 1961, 2045, 2445, 3036, 3056, 3942
ZrmI	AGTACT	2 cut(s)	149, 3276
Zsp2I	ATGCAT	1 cut(s)	3395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.