Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011641.1

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Forward (+)

75538 .. 91956

Gene Structure 16419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011641.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2781 bp

atgatgaataaagtccaagccaaaacattagccttcacaaaagagcctttcattgaagaagaagggcactgcagaatagcacaatggcaattcaatgctctgtcccagtcagagatcagcaaaatggctgcaactcaaatttttctgggtcgatattacgatagcaatcaaaaaccaatcgaaggaggcttgttggatccccgcttgggccctgcaaataggcaatgcggtgactgtgagacatgtggtgcgaaactttcagattgtcctggccactttggatatttggtgcttgctgtccctgtattcaatgttggatatttaagtactgttgtggacgttttgaagtgcatttgtaagtcatgctctcgaataattttggatgacaaatcacgcattcgctttttgaatattgtgagagatcccaaaaaggataaaagcgtgacaatgaaatcaatagtgaagaagtgtactagcatggcaagcaataatagatcagtgaagtgcccgaaatgtggatatatgaatggttcagtgaagagggctcaaggtatgctggcaattgttcatggtgctgtggatgactttaaatcagcgagtcctgtcatgaaggattccaaggcatccattaatctccaacctcatatgcttaaccctgttaaagttttttctttgttcaaaagaatgcttgatgaggattgtgaacttcttaatcttaaaagtagaccagagaacctcatcatgacaaccattgctgtgccacctatagccattcgtccttccgttcttgtggatggatcacagagtaatgaaaatgacattacagagaggttgaagaaaattattcaaacaaacgctaatgttcaactggacctatcagaaggttctaccacaagatttttgtcaaattgggacgtacttcaagccgaagttgcgctgtacataaacagtgatgttcgcggtattccttatcacgtgcaactaaataccaagccattgaatggtttggtacagcgcctcaaagggaagacgggccgttttcgtggaaacctatgtgggaaaagggttgaatatactggcagaactgttatttcacccgaccctaatctgaaaattactgaggtcggaatccctatccaaatggctcagattttaagttatccagaacgtgtgtcccatcataatattgaaaagttgaagcagtgtgtatttaatggaccttctaagtaccctggtgccctagtgctcaaacatcaaaatggcgaggaatggtccttgagggctgagcgacaaaggaagtctcatgctgataatctccgatatggtgacatagttgatcgccacttagaagatggggacattgttcttttcaacagacagccaagcttgcatcggatgtccatcatgtgtcatagggcaaggattatgccttggagaacgttgaggtttaatgaatctgtatgcaacccttataatgctgattttgatggtgacgaaatgaacatgcatgtgccgcaaacagaggaggctcgaactgaggctgttatgttgatgggggtgcaaaacaatctatgcactcccaaaaatggggagattttggttgcttccactcaagattttctaacatcttctttccttataacaaggaaggacacattttatgaccgtgcatctttttcactcatgtgttcgtacatgggggatggcacggagactgtggatttgccaacacctgctgtaattaagccaatagagctatggacaggaaagcagctatatagtgtgttagttcgcccaaattcaaatgtgagagtatatctaaacctaactgttagagagaaatcctactccaacacaaaaactgaagatggaagagaaacagaagcaatgtgcccaaacgatgggtttgtctatttccgtaacagtgagctattatctgggcaacttgggaagggcactttaggaaatggcaataaggatggacttttctctgttcttctcagagactataaagctcatgctgctgcttcttgcatgaatcgtgtagctaaattgagtgcccggtggattggtaatcacggattctcaattgggattagtgatgtacaacctagtgacatcttgtacggtgagaaagaaaaaatcattaagaaaggttatgacaaatgtgacgaccagataaagttgtataaagaaggacagctacgacttgcacctggttgtgatgctgcccaatcacttgaatctgggattactgcagtattaaacgatattagggaccaaactggaaagctgtgcatgcaaacgctacattggagaaacagtcccctgattatgtcccagtgtggttccaaaggatctgctatcaatatcagccagatggttgcttgtgttggtcaacaatcagttggtggtcgtcgtgcaccaaatggtttcatagatcgaagccttcctcactttcctagaaaagaaaatacccctgcagctaaaggctttgttgctagttccttttacagtggcttgacagctacagagttcttttttcatacaatgggagggcgagaaggccttgtggatacagctgtaaaaactgctgacacagggtacatgtctcgtagattgtctaaagttctagaggacctctctgtccagtatgataaaacagtgcgggccgcaaatggaggtattgttcagttttgttatggggatgacggtatggatcctgccatgatgaaaaattcttctgtttctttccaaccagacaacccaacaaacagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

926

Amino Acids

103.02

Weight (kDa)

8.9

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1473, 1640
AarI	CACCTGC	1 cut(s)	1741
AasI	GACNNNNNNGTC	1 cut(s)	2645
Acc36I	ACCTGC	1 cut(s)	1741
AccB1I	GGYRCC	1 cut(s)	1235
AccB7I	CCANNNNNTGG	2 cut(s)	1001, 1901
AccI	GTMKAC	1 cut(s)	724
AccII	CGCG	1 cut(s)	960
AciI	CCGC	6 cut(s)	202, 228, 960, 1514, 2668, 2673
AclI	AACGTT	1 cut(s)	1439
AclWI	GGATC	7 cut(s)	191, 204, 416, 805, 2365, 2714, 2727
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	138, 1798, 2737
AcuI	CTGAAG	1 cut(s)	1884
AcvI	CACGTG	1 cut(s)	976
AfiI	CCNNNNNNNGG	7 cut(s)	182, 206, 515, 1001, 1586, 1587, 1901
AflIII	ACRYGT	3 cut(s)	242, 1168, 2607
AjnI	CCWGG	3 cut(s)	268, 1231, 2215
AleI	CACNNNNGTG	1 cut(s)	1684
AloI	GAACNNNNNNTCC	2 cut(s)	2673, 2705
Alw21I	GWGCWC	2 cut(s)	1248, 2425
Alw26I	GTCTC	5 cut(s)	233, 1305, 1706, 1998, 2616
Alw44I	GTGCAC	1 cut(s)	2421
AlwI	GGATC	7 cut(s)	191, 204, 416, 805, 2365, 2714, 2727
AoxI	GGCC	5 cut(s)	208, 271, 1033, 2566, 2670
ApaI	GGGCCC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	2421
ApeKI	GCWGC	6 cut(s)	128, 1771, 2021, 2024, 2228, 2483
ApoI	RAATTY	3 cut(s)	138, 1798, 2737
ArsI	GACNNNNNNTTYG	2 cut(s)	1705, 1737
AseI	ATTAAT	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	937, 1017
AspS9I	GGNCC	9 cut(s)	208, 209, 871, 1033, 1217, 1272, 2278, 2638, 2670
AsuC2I	CCSGG	1 cut(s)	2062
AsuHPI	GGTGA	5 cut(s)	242, 1086, 1337, 1502, 2141
AvaII	GGWCC	5 cut(s)	871, 1217, 1272, 2278, 2638
BaeGI	GKGCMC	8 cut(s)	69, 212, 509, 1240, 1895, 1958, 2062, 2425
BaeI	ACNNNNGTAYC	2 cut(s)	2568, 2601
BalI	TGGCCA	1 cut(s)	273
BamHI	GGATCC	2 cut(s)	196, 2719
BanI	GGYRCC	1 cut(s)	1235
BanII	GRGCYC	2 cut(s)	212, 547
BarI	GAAGNNNNNNTAC	2 cut(s)	2187, 2219
BbrPI	CACGTG	1 cut(s)	976
BbsI	GAAGAC	1 cut(s)	1034
Bbv12I	GWGCWC	2 cut(s)	1248, 2425
BbvI	GCAGC	6 cut(s)	115, 1783, 2008, 2011, 2215, 2495
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	3 cut(s)	270, 1233, 2217
BciVI	GTATCC	1 cut(s)	2569
BcnI	CCSGG	1 cut(s)	2062
BcoDI	GTCTC	5 cut(s)	233, 1305, 1706, 1998, 2616
BfaI	CTAG	7 cut(s)	474, 1241, 2112, 2463, 2502, 2633, 2779
BfmI	CTRYAG	5 cut(s)	70, 765, 2256, 2481, 2529
BfoI	RGCGCY	1 cut(s)	1018
BfuAI	ACCTGC	1 cut(s)	1741
BfuI	GTATCC	1 cut(s)	2569
BisI	GCNGC	8 cut(s)	129, 1514, 1772, 2022, 2025, 2229, 2484, 2673
BlpI	GCTNAGC	1 cut(s)	1284
BlsI	GCNGC	8 cut(s)	130, 1515, 1773, 2023, 2026, 2230, 2485, 2674
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	4 cut(s)	270, 1233, 2062, 2217
Bme18I	GGWCC	5 cut(s)	871, 1217, 1272, 2278, 2638
BmgT120I	GGNCC	9 cut(s)	208, 209, 871, 1033, 1217, 1272, 2278, 2638, 2670
BmiI	GGNNCC	6 cut(s)	198, 210, 1237, 2279, 2350, 2721
BmrFI	CCNGG	4 cut(s)	270, 1233, 2062, 2217
BmrI	ACTGGG	2 cut(s)	100, 2335
BmsI	GCATC	4 cut(s)	632, 1399, 1679, 2215
BmuI	ACTGGG	2 cut(s)	100, 2335
BpiI	GAAGAC	1 cut(s)	1034
BplI	GAGNNNNNCTC	2 cut(s)	2627, 2659
Bpu1102I	GCTNAGC	1 cut(s)	1284
BpuEI	CTTGAG	3 cut(s)	531, 1297, 1596
BpuMI	CCSGG	1 cut(s)	2062
BsaAI	YACGTR	1 cut(s)	976
BsaBI	GATNNNNATC	2 cut(s)	165, 1400
BsaJI	CCNNGG	3 cut(s)	618, 1231, 1430
BsaXI	ACNNNNNCTCC	4 cut(s)	2308, 2338, 2673, 2703
Bsc4I	CCNNNNNNNGG	7 cut(s)	182, 206, 515, 1001, 1586, 1587, 1901
Bse1I	ACTGG	6 cut(s)	106, 873, 1081, 2290, 2341, 2650
Bse3DI	GCAATG	3 cut(s)	230, 750, 1893
Bse8I	GATNNNNATC	2 cut(s)	165, 1400
BseBI	CCWGG	3 cut(s)	270, 1233, 2217
BseDI	CCNNGG	3 cut(s)	618, 1231, 1430
BseGI	GGATG	8 cut(s)	388, 586, 623, 799, 1401, 1708, 1984, 2713
BseJI	GATNNNNATC	2 cut(s)	165, 1400
BseLI	CCNNNNNNNGG	7 cut(s)	182, 206, 515, 1001, 1586, 1587, 1901
BseMI	GCAATG	3 cut(s)	230, 750, 1893
BseMII	CTCAG	5 cut(s)	1110, 1160, 1275, 1527, 2014
BseNI	ACTGG	6 cut(s)	106, 873, 1081, 2290, 2341, 2650
BseRI	GAGGAG	1 cut(s)	1538
BseSI	GKGCMC	8 cut(s)	69, 212, 509, 1240, 1895, 1958, 2062, 2425
BseXI	GCAGC	6 cut(s)	115, 1783, 2008, 2011, 2215, 2495
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	5 cut(s)	210, 273, 1035, 2568, 2672
BshNI	GGYRCC	1 cut(s)	1235
BsiHKAI	GWGCWC	2 cut(s)	1248, 2425
BsiSI	CCGG	1 cut(s)	2062
BslFI	GGGAC	8 cut(s)	88, 284, 926, 1159, 1370, 2291, 2310, 2323
BslI	CCNNNNNNNGG	7 cut(s)	182, 206, 515, 1001, 1586, 1587, 1901
BsmAI	GTCTC	5 cut(s)	233, 1305, 1706, 1998, 2616
BsmFI	GGGAC	8 cut(s)	88, 284, 926, 1159, 1370, 2291, 2310, 2323
BsmI	GAATGC	2 cut(s)	396, 690
BsnI	GGCC	5 cut(s)	210, 273, 1035, 2568, 2672
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1407I	TGTACA	2 cut(s)	939, 2104
Bsp143I	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
Bsp1720I	GCTNAGC	1 cut(s)	1284
BspACI	CCGC	6 cut(s)	202, 228, 960, 1514, 2668, 2673
BspANI	GGCC	5 cut(s)	210, 273, 1035, 2568, 2672
BspCNI	CTCAG	5 cut(s)	1111, 1159, 1276, 1528, 2013
BspFNI	CGCG	1 cut(s)	960
BspHI	TCATGA	2 cut(s)	606, 741
BspLI	GGNNCC	6 cut(s)	198, 210, 1237, 2279, 2350, 2721
BspMAI	CTGCAG	3 cut(s)	74, 2260, 2485
BspMI	ACCTGC	1 cut(s)	1741
BspPI	GGATC	7 cut(s)	191, 204, 416, 805, 2365, 2714, 2727
BspT107I	GGYRCC	1 cut(s)	1235
BsrDI	GCAATG	3 cut(s)	230, 750, 1893
BsrGI	TGTACA	2 cut(s)	939, 2104
BsrI	ACTGG	6 cut(s)	106, 873, 1081, 2290, 2341, 2650
BssECI	CCNNGG	3 cut(s)	618, 1231, 1430
BssMI	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
BssT1I	CCWWGG	2 cut(s)	618, 1430
Bst2UI	CCWGG	3 cut(s)	270, 1233, 2217
Bst6I	CTCTTC	2 cut(s)	533, 1867
BstAUI	TGTACA	2 cut(s)	939, 2104
BstBAI	YACGTR	1 cut(s)	976
BstC8I	GCNNGC	6 cut(s)	294, 484, 558, 1388, 2300, 2670
BstDEI	CTNAG	7 cut(s)	1119, 1146, 1224, 1284, 1345, 1536, 2000
BstF5I	GGATG	8 cut(s)	388, 586, 623, 799, 1401, 1708, 1984, 2713
BstFNI	CGCG	1 cut(s)	960
BstH2I	RGCGCY	1 cut(s)	1018
BstHHI	GCGC	2 cut(s)	937, 1017
BstKTI	GATC	9 cut(s)	117, 199, 424, 497, 800, 1339, 2360, 2443, 2722
BstMAI	GTCTC	5 cut(s)	233, 1305, 1706, 1998, 2616
BstMBI	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
BstMWI	GCNNNNNNNGC	7 cut(s)	483, 932, 1387, 1513, 1753, 2021, 2299
BstNI	CCWGG	3 cut(s)	270, 1233, 2217
BstNSI	RCATGY	5 cut(s)	246, 1507, 1511, 2302, 2611
BstSCI	CCNGG	4 cut(s)	268, 1231, 2060, 2215
BstSFI	CTRYAG	5 cut(s)	70, 765, 2256, 2481, 2529
BstSLI	GKGCMC	8 cut(s)	69, 212, 509, 1240, 1895, 1958, 2062, 2425
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	6 cut(s)	115, 1783, 2008, 2011, 2215, 2495
BstV2I	GAAGAC	1 cut(s)	1034
BstX2I	RGATCY	4 cut(s)	196, 421, 2357, 2719
BstYI	RGATCY	4 cut(s)	196, 421, 2357, 2719
BsuI	GTATCC	1 cut(s)	2569
BsuRI	GGCC	5 cut(s)	210, 273, 1035, 2568, 2672
BtsCI	GGATG	8 cut(s)	388, 586, 623, 799, 1401, 1708, 1984, 2713
BtsI	GCAGTG	2 cut(s)	67, 1208
BtsIMutI	CAGTG	9 cut(s)	67, 504, 540, 955, 1208, 1930, 2348, 2521, 2670
BveI	ACCTGC	1 cut(s)	1741
Cac8I	GCNNGC	6 cut(s)	294, 484, 558, 1388, 2300, 2670
CciI	TCATGA	2 cut(s)	606, 741
CfoI	GCGC	2 cut(s)	937, 1017
Cfr13I	GGNCC	9 cut(s)	208, 209, 871, 1033, 1217, 1272, 2278, 2638, 2670
CsiI	ACCWGGT	1 cut(s)	2215
DdeI	CTNAG	7 cut(s)	1119, 1146, 1224, 1284, 1345, 1536, 2000
DpnI	GATC	9 cut(s)	116, 198, 423, 496, 799, 1338, 2359, 2442, 2721
DpnII	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
DraI	TTTAAA	1 cut(s)	589
DrdI	GACNNNNNNGTC	1 cut(s)	2645
DseDI	GACNNNNNNGTC	1 cut(s)	2645
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	533, 1867
EarI	CTCTTC	2 cut(s)	533, 1867
Eco130I	CCWWGG	2 cut(s)	618, 1430
Eco147I	AGGCCT	1 cut(s)	2568
Eco24I	GRGCYC	2 cut(s)	212, 547
Eco47I	GGWCC	5 cut(s)	871, 1217, 1272, 2278, 2638
Eco57I	CTGAAG	1 cut(s)	1884
Eco72I	CACGTG	1 cut(s)	976
EcoO109I	RGGNCCY	2 cut(s)	209, 2638
EcoRII	CCWGG	3 cut(s)	268, 1231, 2215
EcoT14I	CCWWGG	2 cut(s)	618, 1430
EcoT22I	ATGCAT	1 cut(s)	1509
EcoT38I	GRGCYC	2 cut(s)	212, 547
ErhI	CCWWGG	2 cut(s)	618, 1430
FaqI	GGGAC	8 cut(s)	88, 284, 926, 1159, 1370, 2291, 2310, 2323
FauI	CCCGC	2 cut(s)	209, 2661
FauNDI	CATATG	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	8 cut(s)	129, 1514, 1772, 2022, 2025, 2229, 2484, 2673
FokI	GGATG	8 cut(s)	395, 593, 610, 806, 1408, 1715, 1991, 2720
FriOI	GRGCYC	2 cut(s)	212, 547
Fsp4HI	GCNGC	8 cut(s)	129, 1514, 1772, 2022, 2025, 2229, 2484, 2673
FspBI	CTAG	7 cut(s)	474, 1241, 2112, 2463, 2502, 2633, 2779
GlaI	GCGC	2 cut(s)	936, 1016
GluI	GCNGC	8 cut(s)	129, 1514, 1772, 2022, 2025, 2229, 2484, 2673
HaeII	RGCGCY	1 cut(s)	1018
HaeIII	GGCC	5 cut(s)	210, 273, 1035, 2568, 2672
HapII	CCGG	1 cut(s)	2062
HhaI	GCGC	2 cut(s)	937, 1017
Hin6I	GCGC	2 cut(s)	935, 1015
HinP1I	GCGC	2 cut(s)	935, 1015
HincII	GTYRAC	1 cut(s)	2399
HindII	GTYRAC	1 cut(s)	2399
HindIII	AAGCTT	1 cut(s)	1384
HinfI	GANTC	7 cut(s)	598, 614, 1128, 1454, 2038, 2082, 2243
HpaII	CCGG	1 cut(s)	2062
HphI	GGTGA	5 cut(s)	242, 1086, 1337, 1502, 2141
Hpy166II	GTNNAC	6 cut(s)	337, 471, 704, 725, 2399, 2423
Hpy188I	TCNGA	9 cut(s)	112, 262, 880, 1110, 1127, 1149, 1319, 1395, 2003
Hpy188III	TCNNGA	6 cut(s)	369, 607, 742, 1163, 1613, 2633
Hpy8I	GTNNAC	6 cut(s)	337, 471, 704, 725, 2399, 2423
Hpy99I	CGWCG	1 cut(s)	2421
HpyCH4IV	ACGT	5 cut(s)	339, 915, 975, 1168, 1439
HpyF10VI	GCNNNNNNNGC	7 cut(s)	483, 932, 1387, 1513, 1753, 2021, 2299
HpyF3I	CTNAG	7 cut(s)	1119, 1146, 1224, 1284, 1345, 1536, 2000
HpySE526I	ACGT	5 cut(s)	339, 915, 975, 1168, 1439
HspAI	GCGC	2 cut(s)	935, 1015
Kzo9I	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
Lsp1109I	GCAGC	6 cut(s)	115, 1783, 2008, 2011, 2215, 2495
LweI	GCATC	4 cut(s)	632, 1399, 1679, 2215
MabI	ACCWGGT	1 cut(s)	2215
MaeI	CTAG	7 cut(s)	474, 1241, 2112, 2463, 2502, 2633, 2779
MaeII	ACGT	5 cut(s)	339, 915, 975, 1168, 1439
MaeIII	GTNAC	7 cut(s)	230, 442, 1325, 1490, 1919, 2114, 2168
MalI	GATC	9 cut(s)	116, 198, 423, 496, 799, 1338, 2359, 2442, 2721
MboI	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
MfeI	CAATTG	2 cut(s)	561, 2088
MflI	RGATCY	4 cut(s)	196, 421, 2357, 2719
MlsI	TGGCCA	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	6 cut(s)	174, 295, 661, 1105, 1875, 2779
Mox20I	TGGCCA	1 cut(s)	273
Mph1103I	ATGCAT	1 cut(s)	1509
MscI	TGGCCA	1 cut(s)	273
MslI	CAYNNNNRTG	4 cut(s)	755, 1257, 1508, 1684
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	2582
MspI	CCGG	1 cut(s)	2062
MspR9I	CCNGG	4 cut(s)	270, 1233, 2062, 2217
MunI	CAATTG	2 cut(s)	561, 2088
Mva1269I	GAATGC	2 cut(s)	396, 690
MvaI	CCWGG	3 cut(s)	270, 1233, 2217
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	7 cut(s)	483, 932, 1387, 1513, 1753, 2021, 2299
NciI	CCSGG	1 cut(s)	2062
NdeI	CATATG	1 cut(s)	645
NdeII	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
NlaIV	GGNNCC	6 cut(s)	198, 210, 1237, 2279, 2350, 2721
NmuCI	GTSAC	6 cut(s)	230, 442, 1325, 1490, 2114, 2168
NsiI	ATGCAT	1 cut(s)	1509
NspI	RCATGY	5 cut(s)	246, 1507, 1511, 2302, 2611
OliI	CACNNNNGTG	1 cut(s)	1684
PaeI	GCATGC	1 cut(s)	2302
PagI	TCATGA	2 cut(s)	606, 741
PaqCI	CACCTGC	1 cut(s)	1741
PceI	AGGCCT	1 cut(s)	2568
PciI	ACATGT	2 cut(s)	242, 2607
PctI	GAATGC	2 cut(s)	396, 690
PfeI	GAWTC	6 cut(s)	614, 1128, 1454, 2038, 2082, 2243
PflMI	CCANNNNNTGG	2 cut(s)	1001, 1901
PkrI	GCNGC	8 cut(s)	130, 1515, 1773, 2023, 2026, 2230, 2485, 2674
PleI	GAGTC	1 cut(s)	606
PmaCI	CACGTG	1 cut(s)	976
PmlI	CACGTG	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	606
Ppu21I	YACGTR	1 cut(s)	976
PpuMI	RGGWCCY	1 cut(s)	2638
PscI	ACATGT	2 cut(s)	242, 2607
PshBI	ATTAAT	1 cut(s)	630
PsiI	TTATAA	2 cut(s)	1473, 1640
Psp1406I	AACGTT	1 cut(s)	1439
Psp5II	RGGWCCY	1 cut(s)	2638
Psp6I	CCWGG	3 cut(s)	268, 1231, 2215
PspCI	CACGTG	1 cut(s)	976
PspGI	CCWGG	3 cut(s)	268, 1231, 2215
PspN4I	GGNNCC	6 cut(s)	198, 210, 1237, 2279, 2350, 2721
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	9 cut(s)	208, 209, 871, 1033, 1217, 1272, 2278, 2638, 2670
PspPPI	RGGWCCY	1 cut(s)	2638
PstI	CTGCAG	3 cut(s)	74, 2260, 2485
PsuI	RGATCY	4 cut(s)	196, 421, 2357, 2719
PvuII	CAGCTG	1 cut(s)	2582
RseI	CAYNNNNRTG	4 cut(s)	755, 1257, 1508, 1684
SatI	GCNGC	8 cut(s)	129, 1514, 1772, 2022, 2025, 2229, 2484, 2673
Sau3AI	GATC	9 cut(s)	114, 196, 421, 494, 797, 1336, 2357, 2440, 2719
Sau96I	GGNCC	9 cut(s)	208, 209, 871, 1033, 1217, 1272, 2278, 2638, 2670
ScaI	AGTACT	1 cut(s)	328
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	4 cut(s)	270, 1233, 2062, 2217
SexAI	ACCWGGT	1 cut(s)	2215
SfaNI	GCATC	4 cut(s)	632, 1399, 1679, 2215
SfcI	CTRYAG	5 cut(s)	70, 765, 2256, 2481, 2529
SinI	GGWCC	5 cut(s)	871, 1217, 1272, 2278, 2638
SmiMI	CAYNNNNRTG	4 cut(s)	755, 1257, 1508, 1684
SmlI	CTYRAG	3 cut(s)	546, 1276, 1611
SmoI	CTYRAG	3 cut(s)	546, 1276, 1611
SphI	GCATGC	1 cut(s)	2302
SseBI	AGGCCT	1 cut(s)	2568
SsiI	CCGC	6 cut(s)	202, 228, 960, 1514, 2668, 2673
SspI	AATATT	2 cut(s)	412, 1186
SspMI	CTAG	7 cut(s)	474, 1241, 2112, 2463, 2502, 2633, 2779
StuI	AGGCCT	1 cut(s)	2568
StyD4I	CCNGG	4 cut(s)	268, 1231, 2060, 2215
StyI	CCWWGG	2 cut(s)	618, 1430
TaiI	ACGT	5 cut(s)	342, 918, 978, 1171, 1442
TaqI	TCGA	5 cut(s)	151, 180, 370, 1531, 2443
TatI	WGTACW	4 cut(s)	326, 470, 939, 2104
TauI	GCSGC	2 cut(s)	1516, 2675
TfiI	GAWTC	6 cut(s)	614, 1128, 1454, 2038, 2082, 2243
TscAI	CASTG	9 cut(s)	74, 504, 540, 955, 1208, 1930, 2348, 2521, 2670
TseFI	GTSAC	6 cut(s)	230, 442, 1325, 1490, 2114, 2168
TseI	GCWGC	6 cut(s)	128, 1771, 2021, 2024, 2228, 2483
Tsp45I	GTSAC	6 cut(s)	230, 442, 1325, 1490, 2114, 2168
TspGWI	ACGGA	4 cut(s)	772, 1724, 1907, 2094
TspRI	CASTG	9 cut(s)	74, 504, 540, 955, 1208, 1930, 2348, 2521, 2670
Van91I	CCANNNNNTGG	2 cut(s)	1001, 1901
VneI	GTGCAC	1 cut(s)	2421
VpaK11BI	GGWCC	5 cut(s)	871, 1217, 1272, 2278, 2638
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	3 cut(s)	138, 1798, 2737
XbaI	TCTAGA	1 cut(s)	2632
XceI	RCATGY	5 cut(s)	246, 1507, 1511, 2302, 2611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1349, 1755
XmiI	GTMKAC	1 cut(s)	724
XspI	CTAG	7 cut(s)	474, 1241, 2112, 2463, 2502, 2633, 2779
ZrmI	AGTACT	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	1509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.