DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60040 AT5G60040 |
| fragaria_vesca | FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631 |
| malus_domestica | MD03G1106800.v1.1 MD09G1157000.v1.1 |
| prunus_persica | Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1 |
| pyrus_communis | pycom03g08620 pycom09g07570 |
| rosa_chinensis | RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861 |
| rosa_laevigata | RLG00000024360 RLG00000035511 |
| rosa_multiflora | Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000 |
| rosa_rugosa | Rorug03G0100400 Rorug05G0344900 Rorug05G0345000 |
| rosa_samantha | Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400 |
| rosa_wichuraiana | Rw5G038070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 432 |
| AccI | GTMKAC | 2 cut(s) | 80, 363 |
| AcsI | RAATTY | 1 cut(s) | 253 |
| AcuI | CTGAAG | 1 cut(s) | 155 |
| AgsI | TTSAA | 4 cut(s) | 214, 253, 320, 448 |
| AluBI | AGCT | 5 cut(s) | 42, 136, 398, 415, 427 |
| AluI | AGCT | 5 cut(s) | 42, 136, 398, 415, 427 |
| Alw26I | GTCTC | 1 cut(s) | 189 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 223 |
| AoxI | GGCC | 1 cut(s) | 503 |
| ApeKI | GCWGC | 1 cut(s) | 395 |
| ApoI | RAATTY | 1 cut(s) | 253 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 190, 223 |
| BbvI | GCAGC | 1 cut(s) | 407 |
| BccI | CCATC | 4 cut(s) | 89, 115, 185, 385 |
| BcoDI | GTCTC | 1 cut(s) | 189 |
| BfaI | CTAG | 3 cut(s) | 185, 236, 500 |
| BfuAI | ACCTGC | 1 cut(s) | 432 |
| BisI | GCNGC | 1 cut(s) | 396 |
| BlpI | GCTNAGC | 1 cut(s) | 423 |
| BlsI | GCNGC | 1 cut(s) | 397 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BpmI | CTGGAG | 2 cut(s) | 49, 137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 399 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 423 |
| BseMII | CTCAG | 2 cut(s) | 413, 414 |
| BseXI | GCAGC | 1 cut(s) | 407 |
| BshFI | GGCC | 1 cut(s) | 505 |
| BsmAI | GTCTC | 1 cut(s) | 189 |
| BsnI | GGCC | 1 cut(s) | 505 |
| Bsp143I | GATC | 1 cut(s) | 405 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 423 |
| BspANI | GGCC | 1 cut(s) | 505 |
| BspCNI | CTCAG | 2 cut(s) | 412, 415 |
| BspMI | ACCTGC | 1 cut(s) | 432 |
| BssMI | GATC | 1 cut(s) | 405 |
| BstDEI | CTNAG | 2 cut(s) | 399, 423 |
| BstKTI | GATC | 1 cut(s) | 408 |
| BstMAI | GTCTC | 1 cut(s) | 189 |
| BstMBI | GATC | 1 cut(s) | 405 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 511 |
| BstV1I | GCAGC | 1 cut(s) | 407 |
| BsuRI | GGCC | 1 cut(s) | 505 |
| BveI | ACCTGC | 1 cut(s) | 432 |
| CaiI | CAGNNNCTG | 1 cut(s) | 223 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| CviJI | RGCY | 6 cut(s) | 42, 136, 398, 415, 427, 505 |
| CviKI_1 | RGCY | 6 cut(s) | 42, 136, 398, 415, 427, 505 |
| DdeI | CTNAG | 2 cut(s) | 399, 423 |
| DpnI | GATC | 1 cut(s) | 407 |
| DpnII | GATC | 1 cut(s) | 405 |
| Eco57I | CTGAAG | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 503 |
| FaiI | YATR | 6 cut(s) | 37, 132, 244, 369, 389, 486 |
| FblI | GTMKAC | 2 cut(s) | 80, 363 |
| Fnu4HI | GCNGC | 1 cut(s) | 396 |
| Fsp4HI | GCNGC | 1 cut(s) | 396 |
| FspBI | CTAG | 3 cut(s) | 185, 236, 500 |
| GluI | GCNGC | 1 cut(s) | 396 |
| GsuI | CTGGAG | 2 cut(s) | 49, 137 |
| HaeIII | GGCC | 1 cut(s) | 505 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 3 cut(s) | 81, 340, 364 |
| Hpy188I | TCNGA | 1 cut(s) | 104 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 401 |
| Hpy8I | GTNNAC | 3 cut(s) | 81, 340, 364 |
| HpyAV | CCTTC | 1 cut(s) | 516 |
| HpyCH4V | TGCA | 3 cut(s) | 73, 491, 514 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 511 |
| HpyF3I | CTNAG | 2 cut(s) | 399, 423 |
| Kzo9I | GATC | 1 cut(s) | 405 |
| LmnI | GCTCC | 1 cut(s) | 39 |
| LpnPI | CCDG | 4 cut(s) | 13, 101, 386, 427 |
| Lsp1109I | GCAGC | 1 cut(s) | 407 |
| MaeI | CTAG | 3 cut(s) | 185, 236, 500 |
| MalI | GATC | 1 cut(s) | 407 |
| MboI | GATC | 1 cut(s) | 405 |
| MboII | GAAGA | 8 cut(s) | 66, 69, 161, 202, 304, 332, 452, 468 |
| MfeI | CAATTG | 1 cut(s) | 298 |
| MluCI | AATT | 2 cut(s) | 253, 298 |
| MnlI | CCTC | 1 cut(s) | 120 |
| MseI | TTAA | 1 cut(s) | 260 |
| MunI | CAATTG | 1 cut(s) | 298 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 511 |
| NdeII | GATC | 1 cut(s) | 405 |
| PkrI | GCNGC | 1 cut(s) | 397 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PstNI | CAGNNNCTG | 1 cut(s) | 223 |
| SaqAI | TTAA | 1 cut(s) | 260 |
| SatI | GCNGC | 1 cut(s) | 396 |
| Sau3AI | GATC | 1 cut(s) | 405 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SetI | ASST | 8 cut(s) | 44, 80, 138, 363, 400, 417, 429, 446 |
| Sse9I | AATT | 2 cut(s) | 253, 298 |
| SspMI | CTAG | 3 cut(s) | 185, 236, 500 |
| TaqI | TCGA | 1 cut(s) | 52 |
| TasI | AATT | 2 cut(s) | 253, 298 |
| Tru1I | TTAA | 1 cut(s) | 260 |
| Tru9I | TTAA | 1 cut(s) | 260 |
| TseI | GCWGC | 1 cut(s) | 395 |
| TspDTI | ATGAA | 1 cut(s) | 322 |
| XapI | RAATTY | 1 cut(s) | 253 |
| XmiI | GTMKAC | 2 cut(s) | 80, 363 |
| XspI | CTAG | 3 cut(s) | 185, 236, 500 |