Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Reverse (-)

67859612 .. 67883617

Gene Structure 24006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035511

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4326 bp

ATGCAACTTGTCCCGTCTCCAGCTAGAATAGACTGGAGTCGGCTGAAGAAGACCCAAGGGTACACTCCCGCCCTTAGCACTCACCCAAACCCCTTCAACCTTCAACCCTCCCTCTTTGCTTTCTGGGTGGAGAAGAGACTTCTACCGGAAAAGATGATGAATAAAGTCCAAGCCAAAACATTAGCCTTCACAAAAGAGCCTTTCATCGAAGAAGAAGGGCACTGCAGAATAGCACAGTGGCAATTCAATGCTCTGTCCCCGTCAGAGATCAGCAAAATGGCTGCAACTCAAATTTTTCTGGGTCGATATTATGATAGCAATCAAAAACCAATCAAAGGAGGCTTGTTGGATCCCCGCTTGGGCCCTGCAAATAGGCAATGCAGTGACTGTGAGACATGTGGTGCGAAACTTTCCGATTGTCCTGGCCACTTTGGATATTTGGTGCTTGCTGTCCCTGTATTCAATGTTGGATATTTAAGTACTGTTGTGGACGTTTTGAAGTGCATTTGTAAGTCATGCTCTCGAATAATTTTGGATGACAAATCACGCAGTCGCTTTTTGAATATTGTGAGAGATCCCAAAAAGGATAAAAGCTTGACAATGAAATCAATAGTGAAGAAGTGTACTAGCATGACAAGCAATAATAGATCAGTGAAGTGCCCGAAATGTGGATATATGAATGGTTCAGTGAAAAGGGCTCAAGGTATGCTGGCAATTGTTCATGGTGCTGTGGATGACTTTAAATCAGCGAGTCCTGTCATGAAGGATTCCAAGGCATCCATTAATCTCCAACCTCATATGCTTAACCCTGTTAAAGTTTTTTCTTTGTTCAAAAGAATGCTTGATGAGGATTGTGAACTTCTTAATCTTAAAAGTAGACCAGAGAACCTCATCATGACAACCATTGCTGTGCCACCTATAGCCATTCGTCCTTCTGTTCTTGTGGATGGATCACAGAGTAACGAAAATGACATTACAGAGAGGTTAAAGAACATTATTCAATCAAACGCTAATGTTCAACTGGACCTATCAGAAGGTTCTACCACAAGATTTTTGTCAAATTGGGACATACTTCAAGCCGAAGTTGCGCTGTACATAAACAGTGATGTTCGCGGTATTCCTTATCACATGCAAGTAAATGTCAAGCCATTGAATGGCTTGGTGCAGCGCCTCAAAGGGAAGACGGGCCGTTTTCGTGGAAACCTATGTGGGAAGAGGGTTGAATATACTGGCAGAACTGTTATTTCACCCGACCCTAATCTGAAAATTACTGAGGTCGGAATCCCTATCCAAATGGCTCAGATATTAAGTTATCCAGAACGTGTGTCCCATCATAATATTGAGAAGTTGAAGCAGTGTGTATTTAATGGACCTTCTAAGTATCCTGGTGCCCTAGTGCTCAAACGTCAAAATGGCGAGGAATGGTCTTTGAGGGCTGAGCGACACAGGAAGTCTCATGCTGATGGTCTCCGATGTGGTGACATAGTTGATCGCCACTTAGAAGATGGGGACATTGTTCTTTTCAACAGACAACCAAGCTTGCATCGGATGTCCATCATGTGTCATAGGGCAAGGATTATGCCTTGGAGAACATTGAGGTTTAATGAATCTGTATGCAACCCATATAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTGCCGCAAACAGAGGAGGCTCGAACTGAGGCTGTTATGTTGATGGGGGTGCAAAACAATCTATGCACTCCCAAAAATGGGGAGATTTTGGTTGCTTCCACTCAAGATTTTCTAACATCTTCTTTCCTTATAACAAGGAAGGACACATTTTATGACCGTGCATCTTTTTCACTCATGTGTTCATACATGGGGGATGGCACGGAGCCTGTGGATTTGCCAACACCTGCTGTAATTAAGCCAATAGAGCTATGGACAGGAAAGCAGCTATATAGTGTGTTAGTTCGCCCAAATTCAAATGTGAGAGTATATCTAAACCTAACTGTTAGAGAGAAATCCTACTCCAACACAAAAACTGAAGATGGAAGAGAAACAGAAGCAATGTGCCCAAACGATGGGTTTGTCTATTTTCGTAACAGTGAGCTATTATCTGGGCAACTTGGGAAGGGCACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTTCTTCTCAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGAATCGTGTAGCTAAATTGAGTGCCCGGTGGATTGGTAATCACGGATTCTCAATTGGGATTAGTGATGTACAACCTAGTGACATCTTGTATGGTGAGAAAGAAAAAATCATTAAGAAAGGTTATGACAAATGTGATGACCAGATAAAGTTGTATAAAGAAGGACAGCTACGACTTGCACCTGGTTGTGACGCTGCCCAATCACTTGAATCTGGGATTACTGCAGTATTAAATGATATTAGGGACCAAACTGGAAAGTTGTGCATGCAAACGCTACATTGGAGAAACAGTCCCCTGATTATGTCCCAGTGTGGTTCCAAAGGATCTGCTATCAATATCAGCCAGATGGTTGCTTGTGTTGGTCAACAATCAGTTGGTGGTCGTCGTGCACCAAATGGTTTCATAGATCGAAGCCTTCCTCACTTTCCTAGAAAAGAAAATACCCCTGCAGCTAAAGGCTTTGTTGCTAGTTCCTTTTACAGTGGCTTGACAGCTACAGAGTTCTTTTTTCATACAATGGGAGGGCGAGAAGGCCTTGTGGATACTGCTGTAAAAACTGCTGACACAGGGTACATGTCTCGTAGATTGTCTAAAGTTCTAGAGGACCTCTCTGTCCAGTATGATAAAACAGTGCGGGCCGCAAATGGAGGTATTGTTCAGTTTTGTTATGGGGATGACGGTATGGATCCTGCAATGATGGAAGGAAAAAGTGGAGCTCCGTTAGACTTCTACCGATTGTTTTTCAAAGCCAAGGCCACATGCCCTGCTGAAGAAAGTAAAAGCCTTTCTCCTGATGAAGTGTCTGAAATAGTGAGAAGCAGGCTTTCGGAACAAGATATGACTCCTGATGGTGGTTGCTCTATGGGTTTTAAAAGTTCTATAGAGCAATTCCTGGATGAATATGTAAAAGCATTAAGAAAAACACAGGAGGCTTTTTTATTGAATCAAAGTCCTGGTTGGACGGTGAAGTCTGCAACTGTAGAGAAGATTGTCCAAAATATATCTGGTGTCACTGCTAGACAGCTGAAGGTTTTTCTAGATACTTGTATTTCTCGTTATCATTCAAAAAAAGTTGATGCGGGAACAGCAATTGGAGTAATTGGAGCTCAAAGCATTGGCGAGCCTGGGACACAGATGACATTAAAAACTTTTCACTTTGCTGGAGTTGCAAGCATGAATGTTACACTTGGAGTCCCTCGTATCAAGGAAATAATAAATGGAGCAAAAAATATCCATACCCCTATCATCACTACAGTACTTGAGTGTGATAATAATCCGATGATTGCACGGATGGTAGCAGGTCGGATTGAAAGAACAAATCTAGGGCAGGTTGCTGAATGTATAGAGATTGTAATGAGTCCAAGAGCAGCATACGTAGCCATCAAGCTTGATATGTTTGTGATACAAGATGCACACTTATCTATAGATGCCAATGTTGTAAAACAATCAATTTTGGGAACTCCAAGGATTAAACTGAAACATGAGCACATTAGGGTTCCAGATAATCAAACAGTTGAAGTTCATTCTCACGAGAAGGATAGAAGAAAACTCCATTTTCACCTCTTCTATTTGAAGAGTATCCTCCCCAACGTTATAGTAAGGGGTATAAAGACAATTGAACGTGTTGTCATTGATGAAGAAAAAGTTAAAAGGGACAAAAAAGATATTGACGTTAAATGTGGAGAAGAAAAGAAGTATAAGTTGTTTGCTGAAGGCAAGGGTCTTCTGGCAGTAATGAGCACTAAAGGAGTAGATGGTTGTAAAACCACAAGTAATGATATTATTGAAGTGCAGCAGACACTTGGAATTGAAGCTGCAAGAACTTGTATCATTGAGGAGATAAAGTATACCATGAAATCACACGGGATGAACATAGATGATCGTCATATGATGCTTTTAGCAGATGTAATGACATTCAGAGGTTTAGTTCTTGGAATCACAAGATTCGGCGTTCAAAAGATGGGCAAAAGTGTATTGATGCTGGCTTCATTTGAGCGAACAGATGATCATCTATTTAATGCTTGCGTTCAGGGTACAGTTGACAAAATTGAAGGAGTAAGTGAAAGCATAATCATGGGTATACCAATGCCAATAGGCACCGGAATGTTCAAAATTAAACAACGCCTCCCTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1442

Amino Acids

160.39

Weight (kDa)

9.03

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	76 - 402	1.4e-75	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	404 - 571	4.1e-73	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	574 - 753	7e-38	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	781 - 884	4.2e-29	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	891 - 1386	2.8e-88	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1793
AarI	CACCTGC	1 cut(s)	1894
AasI	GACNNNNNNGTC	2 cut(s)	2798, 3154
Acc36I	ACCTGC	3 cut(s)	1894, 3476, 3505
AccB1I	GGYRCC	2 cut(s)	1388, 4283
AccB7I	CCANNNNNTGG	2 cut(s)	1154, 2054
AccI	GTMKAC	3 cut(s)	877, 4034, 4267
AccII	CGCG	1 cut(s)	1113
AciI	CCGC	7 cut(s)	69, 355, 1113, 1667, 2821, 2826, 3266
AclI	AACGTT	1 cut(s)	3777
AclWI	GGATC	7 cut(s)	344, 357, 569, 958, 2518, 2867, 2880
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	291, 1951
AcuI	CTGAAG	5 cut(s)	65, 2037, 2976, 3233, 3918
AfaI	GTAC	8 cut(s)	62, 481, 625, 1094, 2259, 2759, 3444, 4222
AfiI	CCNNNNNNNGG	8 cut(s)	335, 359, 668, 1154, 1739, 1740, 2054, 3038
AflIII	ACRYGT	4 cut(s)	395, 1321, 2760, 3808
AjnI	CCWGG	6 cut(s)	421, 1384, 2368, 3078, 3139, 3310
AleI	CACNNNNGTG	1 cut(s)	1837
AloI	GAACNNNNNNTCC	2 cut(s)	2826, 2858
Alw21I	GWGCWC	6 cut(s)	1401, 2578, 2905, 3295, 3675, 3929
Alw26I	GTCTC	7 cut(s)	21, 130, 386, 1458, 1472, 2151, 2769
Alw44I	GTGCAC	1 cut(s)	2574
AlwI	GGATC	7 cut(s)	344, 357, 569, 958, 2518, 2867, 2880
AlwNI	CAGNNNCTG	1 cut(s)	387
AoxI	GGCC	6 cut(s)	361, 424, 1186, 2719, 2823, 2940
ApaI	GGGCCC	1 cut(s)	365
ApaLI	GTGCAC	1 cut(s)	2574
ApoI	RAATTY	2 cut(s)	291, 1951
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	1090, 1170
AspS9I	GGNCC	8 cut(s)	361, 362, 1024, 1186, 1370, 2431, 2791, 2823
AsuC2I	CCSGG	1 cut(s)	2215
AsuHPI	GGTGA	7 cut(s)	74, 1239, 1490, 1655, 2294, 3163, 3737
AvaII	GGWCC	4 cut(s)	1024, 1370, 2431, 2791
BaeGI	GKGCMC	8 cut(s)	222, 365, 662, 1393, 2048, 2111, 2215, 2578
BaeI	ACNNNNGTAYC	2 cut(s)	2721, 2754
BalI	TGGCCA	1 cut(s)	426
BamHI	GGATCC	2 cut(s)	349, 2872
BanI	GGYRCC	2 cut(s)	1388, 4283
BanII	GRGCYC	4 cut(s)	365, 700, 2905, 3295
BarI	GAAGNNNNNNTAC	2 cut(s)	2340, 2372
BauI	CACGAG	1 cut(s)	3716
BbsI	GAAGAC	3 cut(s)	56, 1187, 3902
Bbv12I	GWGCWC	6 cut(s)	1401, 2578, 2905, 3295, 3675, 3929
BceAI	ACGGC	1 cut(s)	1173
BciT130I	CCWGG	6 cut(s)	423, 1386, 2370, 3080, 3141, 3312
BciVI	GTATCC	3 cut(s)	1392, 2722, 3776
BclI	TGATCA	1 cut(s)	4192
BcnI	CCSGG	1 cut(s)	2215
BcoDI	GTCTC	7 cut(s)	21, 130, 386, 1458, 1472, 2151, 2769
BfmI	CTRYAG	9 cut(s)	223, 918, 2409, 2634, 2682, 3066, 3165, 3438, 3609
BfoI	RGCGCY	1 cut(s)	1171
BfuAI	ACCTGC	3 cut(s)	1894, 3476, 3505
BfuI	GTATCC	3 cut(s)	1392, 2722, 3776
BlpI	GCTNAGC	1 cut(s)	1437
BmcAI	AGTACT	2 cut(s)	481, 3444
Bme1390I	CCNGG	7 cut(s)	423, 1386, 2215, 2370, 3080, 3141, 3312
Bme18I	GGWCC	4 cut(s)	1024, 1370, 2431, 2791
BmgT120I	GGNCC	8 cut(s)	361, 362, 1024, 1186, 1370, 2431, 2791, 2823
BmiI	GGNNCC	9 cut(s)	351, 363, 1390, 1866, 2432, 2503, 2874, 3684, 4285
BmrFI	CCNGG	7 cut(s)	423, 1386, 2215, 2370, 3080, 3141, 3312
BmrI	ACTGGG	1 cut(s)	2488
BmsI	GCATC	8 cut(s)	785, 1552, 1832, 3253, 3586, 3604, 4068, 4155
BmuI	ACTGGG	1 cut(s)	2488
BoxI	GACNNNNGTC	1 cut(s)	36
BpiI	GAAGAC	3 cut(s)	56, 1187, 3902
BplI	GAGNNNNNCTC	2 cut(s)	2780, 2812
BpmI	CTGGAG	2 cut(s)	55, 3369
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	1437
BpuEI	CTTGAG	3 cut(s)	684, 1749, 3467
BpuMI	CCSGG	1 cut(s)	2215
BsaAI	YACGTR	1 cut(s)	3562
BsaBI	GATNNNNATC	4 cut(s)	318, 1553, 3459, 4194
BsaI	GGTCTC	1 cut(s)	1472
BsaJI	CCNNGG	6 cut(s)	55, 771, 1583, 2937, 3311, 3650
BsaWI	WCCGGW	2 cut(s)	145, 4286
BsaXI	ACNNNNNCTCC	8 cut(s)	2461, 2491, 2826, 2856, 4016, 4046, 4296, 4326
Bsc4I	CCNNNNNNNGG	8 cut(s)	335, 359, 668, 1154, 1739, 1740, 2054, 3038
Bse1I	ACTGG	6 cut(s)	38, 1026, 1234, 2443, 2494, 2803
Bse3DI	GCAATG	5 cut(s)	383, 903, 2046, 2886, 4326
Bse8I	GATNNNNATC	4 cut(s)	318, 1553, 3459, 4194
BseBI	CCWGG	6 cut(s)	423, 1386, 2370, 3080, 3141, 3312
BseDI	CCNNGG	6 cut(s)	55, 771, 1583, 2937, 3311, 3650
BseJI	GATNNNNATC	4 cut(s)	318, 1553, 3459, 4194
BseLI	CCNNNNNNNGG	8 cut(s)	335, 359, 668, 1154, 1739, 1740, 2054, 3038
BseMI	GCAATG	5 cut(s)	383, 903, 2046, 2886, 4326
BseMII	CTCAG	5 cut(s)	1263, 1313, 1428, 1680, 2167
BseNI	ACTGG	6 cut(s)	38, 1026, 1234, 2443, 2494, 2803
BseRI	GAGGAG	2 cut(s)	1691, 4037
BseSI	GKGCMC	8 cut(s)	222, 365, 662, 1393, 2048, 2111, 2215, 2578
BsgI	GTGCAG	2 cut(s)	1184, 3998
Bsh1236I	CGCG	1 cut(s)	1113
BshFI	GGCC	6 cut(s)	363, 426, 1188, 2721, 2825, 2942
BshNI	GGYRCC	2 cut(s)	1388, 4283
BsiHKAI	GWGCWC	6 cut(s)	1401, 2578, 2905, 3295, 3675, 3929
BsiSI	CCGG	3 cut(s)	146, 2215, 4287
BslI	CCNNNNNNNGG	8 cut(s)	335, 359, 668, 1154, 1739, 1740, 2054, 3038
BsmAI	GTCTC	7 cut(s)	21, 130, 386, 1458, 1472, 2151, 2769
BsmBI	CGTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	843
BsnI	GGCC	6 cut(s)	363, 426, 1188, 2721, 2825, 2942
Bso31I	GGTCTC	1 cut(s)	1472
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1407I	TGTACA	2 cut(s)	1092, 2257
Bsp1720I	GCTNAGC	1 cut(s)	1437
BspACI	CCGC	7 cut(s)	69, 355, 1113, 1667, 2821, 2826, 3266
BspANI	GGCC	6 cut(s)	363, 426, 1188, 2721, 2825, 2942
BspCNI	CTCAG	5 cut(s)	1264, 1312, 1429, 1681, 2166
BspFNI	CGCG	1 cut(s)	1113
BspHI	TCATGA	2 cut(s)	759, 894
BspLI	GGNNCC	9 cut(s)	351, 363, 1390, 1866, 2432, 2503, 2874, 3684, 4285
BspMAI	CTGCAG	3 cut(s)	227, 2413, 2638
BspMI	ACCTGC	3 cut(s)	1894, 3476, 3505
BspPI	GGATC	7 cut(s)	344, 357, 569, 958, 2518, 2867, 2880
BspT107I	GGYRCC	2 cut(s)	1388, 4283
BspTNI	GGTCTC	1 cut(s)	1472
BsrDI	GCAATG	5 cut(s)	383, 903, 2046, 2886, 4326
BsrGI	TGTACA	2 cut(s)	1092, 2257
BsrI	ACTGG	6 cut(s)	38, 1026, 1234, 2443, 2494, 2803
BssECI	CCNNGG	6 cut(s)	55, 771, 1583, 2937, 3311, 3650
BssNAI	GTATAC	2 cut(s)	4035, 4268
BssSI	CACGAG	1 cut(s)	3716
BssT1I	CCWWGG	5 cut(s)	55, 771, 1583, 2937, 3650
Bst1107I	GTATAC	2 cut(s)	4035, 4268
Bst2BI	CACGAG	1 cut(s)	3716
Bst2UI	CCWGG	6 cut(s)	423, 1386, 2370, 3080, 3141, 3312
Bst6I	CTCTTC	5 cut(s)	128, 1208, 2020, 3755, 3755
BstAUI	TGTACA	2 cut(s)	1092, 2257
BstBAI	YACGTR	1 cut(s)	3562
BstDEI	CTNAG	8 cut(s)	74, 1272, 1299, 1377, 1437, 1498, 1689, 2153
BstFNI	CGCG	1 cut(s)	1113
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	2 cut(s)	1090, 1170
BstMAI	GTCTC	7 cut(s)	21, 130, 386, 1458, 1472, 2151, 2769
BstMWI	GCNNNNNNNGC	8 cut(s)	636, 1085, 1666, 1906, 2174, 3272, 3353, 3563
BstNI	CCWGG	6 cut(s)	423, 1386, 2370, 3080, 3141, 3312
BstNSI	RCATGY	7 cut(s)	399, 1132, 1660, 1664, 2455, 2764, 2949
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSCI	CCNGG	7 cut(s)	421, 1384, 2213, 2368, 3078, 3139, 3310
BstSFI	CTRYAG	9 cut(s)	223, 918, 2409, 2634, 2682, 3066, 3165, 3438, 3609
BstSLI	GKGCMC	8 cut(s)	222, 365, 662, 1393, 2048, 2111, 2215, 2578
BstSNI	TACGTA	1 cut(s)	3562
BstUI	CGCG	1 cut(s)	1113
BstV2I	GAAGAC	3 cut(s)	56, 1187, 3902
BstX2I	RGATCY	4 cut(s)	349, 574, 2510, 2872
BstYI	RGATCY	4 cut(s)	349, 574, 2510, 2872
BstZ17I	GTATAC	2 cut(s)	4035, 4268
BsuI	GTATCC	3 cut(s)	1392, 2722, 3776
BsuRI	GGCC	6 cut(s)	363, 426, 1188, 2721, 2825, 2942
BtsI	GCAGTG	4 cut(s)	220, 388, 1361, 3198
BveI	ACCTGC	3 cut(s)	1894, 3476, 3505
CaiI	CAGNNNCTG	1 cut(s)	387
CciI	TCATGA	2 cut(s)	759, 894
CfoI	GCGC	2 cut(s)	1090, 1170
Cfr13I	GGNCC	8 cut(s)	361, 362, 1024, 1186, 1370, 2431, 2791, 2823
CseI	GACGC	1 cut(s)	2387
CsiI	ACCWGGT	1 cut(s)	2368
Csp6I	GTAC	8 cut(s)	61, 480, 624, 1093, 2258, 2758, 3443, 4221
CviQI	GTAC	8 cut(s)	61, 480, 624, 1093, 2258, 2758, 3443, 4221
DdeI	CTNAG	8 cut(s)	74, 1272, 1299, 1377, 1437, 1498, 1689, 2153
DraI	TTTAAA	2 cut(s)	742, 3058
DrdI	GACNNNNNNGTC	2 cut(s)	2798, 3154
DseDI	GACNNNNNNGTC	2 cut(s)	2798, 3154
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	5 cut(s)	128, 1208, 2020, 3755, 3755
EarI	CTCTTC	5 cut(s)	128, 1208, 2020, 3755, 3755
Ecl136II	GAGCTC	2 cut(s)	2903, 3293
Eco105I	TACGTA	1 cut(s)	3562
Eco130I	CCWWGG	5 cut(s)	55, 771, 1583, 2937, 3650
Eco147I	AGGCCT	1 cut(s)	2721
Eco24I	GRGCYC	4 cut(s)	365, 700, 2905, 3295
Eco31I	GGTCTC	1 cut(s)	1472
Eco47I	GGWCC	4 cut(s)	1024, 1370, 2431, 2791
Eco53kI	GAGCTC	2 cut(s)	2903, 3293
Eco57I	CTGAAG	5 cut(s)	65, 2037, 2976, 3233, 3918
EcoICRI	GAGCTC	2 cut(s)	2903, 3293
EcoO109I	RGGNCCY	2 cut(s)	362, 2791
EcoRII	CCWGG	6 cut(s)	421, 1384, 2368, 3078, 3139, 3310
EcoT14I	CCWWGG	5 cut(s)	55, 771, 1583, 2937, 3650
EcoT22I	ATGCAT	1 cut(s)	1662
EcoT38I	GRGCYC	4 cut(s)	365, 700, 2905, 3295
ErhI	CCWWGG	5 cut(s)	55, 771, 1583, 2937, 3650
Esp3I	CGTCTC	1 cut(s)	21
FauI	CCCGC	4 cut(s)	76, 362, 2814, 3259
FauNDI	CATATG	2 cut(s)	798, 4074
FbaI	TGATCA	1 cut(s)	4192
FblI	GTMKAC	3 cut(s)	877, 4034, 4267
FriOI	GRGCYC	4 cut(s)	365, 700, 2905, 3295
GlaI	GCGC	2 cut(s)	1089, 1169
GsuI	CTGGAG	2 cut(s)	55, 3369
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	6 cut(s)	363, 426, 1188, 2721, 2825, 2942
HapII	CCGG	3 cut(s)	146, 2215, 4287
HgaI	GACGC	1 cut(s)	2387
HhaI	GCGC	2 cut(s)	1090, 1170
Hin6I	GCGC	2 cut(s)	1088, 1168
HinP1I	GCGC	2 cut(s)	1088, 1168
HincII	GTYRAC	2 cut(s)	2552, 4228
HindII	GTYRAC	2 cut(s)	2552, 4228
HindIII	AAGCTT	3 cut(s)	592, 1537, 3572
HpaII	CCGG	3 cut(s)	146, 2215, 4287
HphI	GGTGA	7 cut(s)	74, 1239, 1490, 1655, 2294, 3163, 3737
Hpy99I	CGWCG	1 cut(s)	2574
HpyCH4IV	ACGT	7 cut(s)	492, 1321, 1405, 3561, 3777, 3808, 3858
HpyF10VI	GCNNNNNNNGC	8 cut(s)	636, 1085, 1666, 1906, 2174, 3272, 3353, 3563
HpyF3I	CTNAG	8 cut(s)	74, 1272, 1299, 1377, 1437, 1498, 1689, 2153
HpySE526I	ACGT	7 cut(s)	492, 1321, 1405, 3561, 3777, 3808, 3858
HspAI	GCGC	2 cut(s)	1088, 1168
Ksp22I	TGATCA	1 cut(s)	4192
LmnI	GCTCC	5 cut(s)	1864, 2900, 2908, 3290, 3407
LweI	GCATC	8 cut(s)	785, 1552, 1832, 3253, 3586, 3604, 4068, 4155
MabI	ACCWGGT	1 cut(s)	2368
MaeII	ACGT	7 cut(s)	492, 1321, 1405, 3561, 3777, 3808, 3858
MaeIII	GTNAC	9 cut(s)	383, 959, 1478, 1643, 2072, 2267, 2375, 3196, 3367
MfeI	CAATTG	4 cut(s)	714, 2241, 3276, 3801
MflI	RGATCY	4 cut(s)	349, 574, 2510, 2872
MlsI	TGGCCA	1 cut(s)	426
MluNI	TGGCCA	1 cut(s)	426
MlyI	GAGTC	5 cut(s)	46, 760, 3022, 3387, 3553
MmeI	TCCRAC	7 cut(s)	327, 448, 814, 1258, 2028, 3125, 3470
Mox20I	TGGCCA	1 cut(s)	426
Mph1103I	ATGCAT	1 cut(s)	1662
MscI	TGGCCA	1 cut(s)	426
MslI	CAYNNNNRTG	6 cut(s)	908, 1461, 1661, 1837, 4259, 4289
Msp20I	TGGCCA	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	3211
MspI	CCGG	3 cut(s)	146, 2215, 4287
MspR9I	CCNGG	7 cut(s)	423, 1386, 2215, 2370, 3080, 3141, 3312
MunI	CAATTG	4 cut(s)	714, 2241, 3276, 3801
Mva1269I	GAATGC	1 cut(s)	843
MvaI	CCWGG	6 cut(s)	423, 1386, 2370, 3080, 3141, 3312
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	8 cut(s)	636, 1085, 1666, 1906, 2174, 3272, 3353, 3563
NciI	CCSGG	1 cut(s)	2215
NdeI	CATATG	2 cut(s)	798, 4074
NlaIV	GGNNCC	9 cut(s)	351, 363, 1390, 1866, 2432, 2503, 2874, 3684, 4285
NmuCI	GTSAC	6 cut(s)	383, 1478, 1643, 2267, 2375, 3196
NsiI	ATGCAT	1 cut(s)	1662
NspI	RCATGY	7 cut(s)	399, 1132, 1660, 1664, 2455, 2764, 2949
OliI	CACNNNNGTG	1 cut(s)	1837
PaeI	GCATGC	1 cut(s)	2455
PagI	TCATGA	2 cut(s)	759, 894
PaqCI	CACCTGC	1 cut(s)	1894
PceI	AGGCCT	1 cut(s)	2721
PciI	ACATGT	2 cut(s)	395, 2760
PctI	GAATGC	1 cut(s)	843
PfeI	GAWTC	9 cut(s)	767, 1281, 1607, 2191, 2235, 2396, 3130, 4122, 4131
PflMI	CCANNNNNTGG	2 cut(s)	1154, 2054
PfoI	TCCNGGA	1 cut(s)	3078
PleI	GAGTC	5 cut(s)	45, 759, 3022, 3386, 3552
PpsI	GAGTC	5 cut(s)	45, 759, 3022, 3386, 3552
Ppu21I	YACGTR	1 cut(s)	3562
PpuMI	RGGWCCY	1 cut(s)	2791
PscI	ACATGT	2 cut(s)	395, 2760
PshAI	GACNNNNGTC	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	1793
Psp124BI	GAGCTC	2 cut(s)	2905, 3295
Psp1406I	AACGTT	1 cut(s)	3777
Psp5II	RGGWCCY	1 cut(s)	2791
Psp6I	CCWGG	6 cut(s)	421, 1384, 2368, 3078, 3139, 3310
PspGI	CCWGG	6 cut(s)	421, 1384, 2368, 3078, 3139, 3310
PspN4I	GGNNCC	9 cut(s)	351, 363, 1390, 1866, 2432, 2503, 2874, 3684, 4285
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	8 cut(s)	361, 362, 1024, 1186, 1370, 2431, 2791, 2823
PspPPI	RGGWCCY	1 cut(s)	2791
PstI	CTGCAG	3 cut(s)	227, 2413, 2638
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	4 cut(s)	349, 574, 2510, 2872
PvuII	CAGCTG	1 cut(s)	3211
RsaI	GTAC	8 cut(s)	62, 481, 625, 1094, 2259, 2759, 3444, 4222
RsaNI	GTAC	8 cut(s)	61, 480, 624, 1093, 2258, 2758, 3443, 4221
RseI	CAYNNNNRTG	6 cut(s)	908, 1461, 1661, 1837, 4259, 4289
SacI	GAGCTC	2 cut(s)	2905, 3295
Sau96I	GGNCC	8 cut(s)	361, 362, 1024, 1186, 1370, 2431, 2791, 2823
ScaI	AGTACT	2 cut(s)	481, 3444
SchI	GAGTC	5 cut(s)	46, 760, 3022, 3387, 3553
ScrFI	CCNGG	7 cut(s)	423, 1386, 2215, 2370, 3080, 3141, 3312
SexAI	ACCWGGT	1 cut(s)	2368
SfaNI	GCATC	8 cut(s)	785, 1552, 1832, 3253, 3586, 3604, 4068, 4155
SfcI	CTRYAG	9 cut(s)	223, 918, 2409, 2634, 2682, 3066, 3165, 3438, 3609
SinI	GGWCC	4 cut(s)	1024, 1370, 2431, 2791
SmiMI	CAYNNNNRTG	6 cut(s)	908, 1461, 1661, 1837, 4259, 4289
SmlI	CTYRAG	3 cut(s)	699, 1764, 3446
SmoI	CTYRAG	3 cut(s)	699, 1764, 3446
SnaBI	TACGTA	1 cut(s)	3562
SphI	GCATGC	1 cut(s)	2455
SseBI	AGGCCT	1 cut(s)	2721
SsiI	CCGC	7 cut(s)	69, 355, 1113, 1667, 2821, 2826, 3266
SspI	AATATT	2 cut(s)	565, 1339
SstI	GAGCTC	2 cut(s)	2905, 3295
StuI	AGGCCT	1 cut(s)	2721
StyD4I	CCNGG	7 cut(s)	421, 1384, 2213, 2368, 3078, 3139, 3310
StyI	CCWWGG	5 cut(s)	55, 771, 1583, 2937, 3650
TaiI	ACGT	7 cut(s)	495, 1324, 1408, 3564, 3780, 3811, 3861
TaqI	TCGA	5 cut(s)	207, 304, 523, 1684, 2596
TatI	WGTACW	5 cut(s)	479, 623, 1092, 2257, 3442
TauI	GCSGC	2 cut(s)	1669, 2828
TfiI	GAWTC	9 cut(s)	767, 1281, 1607, 2191, 2235, 2396, 3130, 4122, 4131
TseFI	GTSAC	6 cut(s)	383, 1478, 1643, 2267, 2375, 3196
Tsp45I	GTSAC	6 cut(s)	383, 1478, 1643, 2267, 2375, 3196
TspGWI	ACGGA	4 cut(s)	1877, 2247, 2895, 3490
Van91I	CCANNNNNTGG	2 cut(s)	1154, 2054
VneI	GTGCAC	1 cut(s)	2574
VpaK11BI	GGWCC	4 cut(s)	1024, 1370, 2431, 2791
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	2 cut(s)	291, 1951
XbaI	TCTAGA	2 cut(s)	2785, 3223
XceI	RCATGY	7 cut(s)	399, 1132, 1660, 1664, 2455, 2764, 2949
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1502, 1908, 3188
XmiI	GTMKAC	3 cut(s)	877, 4034, 4267
ZrmI	AGTACT	2 cut(s)	481, 3444
Zsp2I	ATGCAT	1 cut(s)	1662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.