DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60040 AT5G60040 |
| fragaria_vesca | FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631 |
| malus_domestica | MD03G1106800.v1.1 MD09G1157000.v1.1 |
| prunus_persica | Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1 |
| pyrus_communis | pycom03g08620 pycom09g07570 |
| rosa_chinensis | RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861 |
| rosa_laevigata | RLG00000024360 RLG00000035511 |
| rosa_multiflora | Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000 |
| rosa_rugosa | Rorug03G0100400 Rorug05G0344900 Rorug05G0345000 |
| rosa_samantha | Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400 |
| rosa_wichuraiana | Rw5G038070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 434 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2561, 2942 |
| AatII | GACGTC | 1 cut(s) | 325 |
| Acc16I | TGCGCA | 1 cut(s) | 296 |
| Acc36I | ACCTGC | 1 cut(s) | 3271 |
| AccB1I | GGYRCC | 3 cut(s) | 685, 1163, 3665 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 929, 1508, 2467 |
| AccBSI | CCGCTC | 2 cut(s) | 3320, 3946 |
| AclI | AACGTT | 1 cut(s) | 3132 |
| AclWI | GGATC | 6 cut(s) | 733, 2281, 2605, 2630, 2643, 2904 |
| AcoI | YGGCCR | 3 cut(s) | 1006, 2089, 2311 |
| AcuI | CTGAAG | 5 cut(s) | 51, 2766, 2999, 3449, 3714 |
| AcyI | GRCGYC | 1 cut(s) | 322 |
| AflIII | ACRYGT | 3 cut(s) | 1096, 2523, 2711 |
| AgeI | ACCGGT | 1 cut(s) | 3668 |
| AhlI | ACTAGT | 1 cut(s) | 2171 |
| AjnI | CCWGG | 5 cut(s) | 1159, 1959, 2131, 2844, 3076 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1859, 1891 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2589, 2621 |
| Alw21I | GWGCWC | 5 cut(s) | 419, 1848, 2341, 2671, 3061 |
| Alw26I | GTCTC | 9 cut(s) | 313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627 |
| Alw44I | GTGCAC | 1 cut(s) | 2337 |
| AlwI | GGATC | 6 cut(s) | 733, 2281, 2605, 2630, 2643, 2904 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 946, 2447 |
| Ama87I | CYCGRG | 1 cut(s) | 169 |
| AoxI | GGCC | 7 cut(s) | 1006, 1449, 2089, 2311, 2706, 3253, 4142 |
| ApaLI | GTGCAC | 1 cut(s) | 2337 |
| ApeKI | GCWGC | 9 cut(s) | 821, 940, 1937, 1940, 2399, 2813, 3742, 3764, 4129 |
| AseI | ATTAAT | 2 cut(s) | 2060, 3585 |
| AsiGI | ACCGGT | 1 cut(s) | 3668 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2984, 3474 |
| AspLEI | GCGC | 4 cut(s) | 297, 945, 1716, 2813 |
| AspS9I | GGNCC | 6 cut(s) | 97, 110, 1145, 1450, 3145, 4142 |
| AsuC2I | CCSGG | 3 cut(s) | 170, 171, 1453 |
| AsuHPI | GGTGA | 5 cut(s) | 1014, 1259, 3503, 3610, 3884 |
| AvaI | CYCGRG | 1 cut(s) | 169 |
| AvaII | GGWCC | 4 cut(s) | 97, 110, 1145, 3145 |
| AxyI | CCTNAGG | 1 cut(s) | 3480 |
| BaeGI | GKGCMC | 5 cut(s) | 177, 1811, 1978, 2341, 3692 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2484, 2517 |
| BalI | TGGCCA | 2 cut(s) | 2091, 2313 |
| BamHI | GGATCC | 1 cut(s) | 2635 |
| BanI | GGYRCC | 3 cut(s) | 685, 1163, 3665 |
| BanII | GRGCYC | 4 cut(s) | 339, 1848, 2671, 3061 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2103, 2135 |
| BauI | CACGAG | 1 cut(s) | 2879 |
| BbsI | GAAGAC | 3 cut(s) | 1278, 2977, 3665 |
| Bbv12I | GWGCWC | 5 cut(s) | 419, 1848, 2341, 2671, 3061 |
| BbvI | GCAGC | 9 cut(s) | 833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141 |
| BceAI | ACGGC | 2 cut(s) | 1900, 2483 |
| BciT130I | CCWGG | 5 cut(s) | 1161, 1961, 2133, 2846, 3078 |
| BciVI | GTATCC | 6 cut(s) | 176, 1627, 2485, 2513, 3214, 4040 |
| BclI | TGATCA | 1 cut(s) | 2247 |
| BcnI | CCSGG | 3 cut(s) | 170, 171, 1453 |
| BcoDI | GTCTC | 9 cut(s) | 313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627 |
| BcuI | ACTAGT | 1 cut(s) | 2171 |
| BfmI | CTRYAG | 5 cut(s) | 819, 2601, 3204, 3327, 3375 |
| BfoI | RGCGCY | 1 cut(s) | 946 |
| BfuAI | ACCTGC | 1 cut(s) | 3271 |
| BfuI | GTATCC | 6 cut(s) | 176, 1627, 2485, 2513, 3214, 4040 |
| BmcAI | AGTACT | 2 cut(s) | 229, 3210 |
| Bme1390I | CCNGG | 8 cut(s) | 170, 171, 1161, 1453, 1961, 2133, 2846, 3078 |
| Bme18I | GGWCC | 4 cut(s) | 97, 110, 1145, 3145 |
| BmeT110I | CYCGRG | 1 cut(s) | 169 |
| BmgT120I | GGNCC | 6 cut(s) | 97, 110, 1145, 1450, 3145, 4142 |
| BmiI | GGNNCC | 9 cut(s) | 99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667 |
| BmrFI | CCNGG | 8 cut(s) | 170, 171, 1161, 1453, 1961, 2133, 2846, 3078 |
| BmrI | ACTGGG | 2 cut(s) | 2172, 2251 |
| BmuI | ACTGGG | 2 cut(s) | 2172, 2251 |
| BpiI | GAAGAC | 3 cut(s) | 1278, 2977, 3665 |
| BpmI | CTGGAG | 3 cut(s) | 1800, 2742, 4109 |
| BpuEI | CTTGAG | 2 cut(s) | 2177, 3233 |
| BpuMI | CCSGG | 3 cut(s) | 170, 171, 1453 |
| BsaBI | GATNNNNATC | 2 cut(s) | 66, 2901 |
| BsaHI | GRCGYC | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 8 cut(s) | 169, 170, 1047, 1159, 1352, 2703, 3077, 3139 |
| BsaWI | WCCGGW | 1 cut(s) | 3668 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 115, 145, 2224, 2254, 2725, 2755 |
| Bse118I | RCCGGY | 1 cut(s) | 3668 |
| Bse1I | ACTGG | 9 cut(s) | 407, 1009, 1783, 2167, 2206, 2257, 2521, 2566, 4054 |
| Bse21I | CCTNAGG | 1 cut(s) | 3480 |
| Bse3DI | GCAATG | 5 cut(s) | 678, 742, 1224, 1809, 2649 |
| Bse8I | GATNNNNATC | 2 cut(s) | 66, 2901 |
| BseBI | CCWGG | 5 cut(s) | 1161, 1961, 2133, 2846, 3078 |
| BseDI | CCNNGG | 8 cut(s) | 169, 170, 1047, 1159, 1352, 2703, 3077, 3139 |
| BseJI | GATNNNNATC | 2 cut(s) | 66, 2901 |
| BseMI | GCAATG | 5 cut(s) | 678, 742, 1224, 1809, 2649 |
| BseMII | CTCAG | 2 cut(s) | 2439, 3494 |
| BseNI | ACTGG | 9 cut(s) | 407, 1009, 1783, 2167, 2206, 2257, 2521, 2566, 4054 |
| BseRI | GAGGAG | 2 cut(s) | 299, 3800 |
| BseSI | GKGCMC | 5 cut(s) | 177, 1811, 1978, 2341, 3692 |
| BseXI | GCAGC | 9 cut(s) | 833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141 |
| BseYI | CCCAGC | 3 cut(s) | 466, 1853, 3032 |
| BsgI | GTGCAG | 3 cut(s) | 959, 3761, 4148 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3832 |
| BshFI | GGCC | 7 cut(s) | 1008, 1451, 2091, 2313, 2708, 3255, 4144 |
| BshNI | GGYRCC | 3 cut(s) | 685, 1163, 3665 |
| BshTI | ACCGGT | 1 cut(s) | 3668 |
| BsiEI | CGRYCG | 1 cut(s) | 3832 |
| BsiHKAI | GWGCWC | 5 cut(s) | 419, 1848, 2341, 2671, 3061 |
| BsiHKCI | CYCGRG | 1 cut(s) | 169 |
| BsiSI | CCGG | 5 cut(s) | 170, 563, 1453, 3114, 3669 |
| BsmAI | GTCTC | 9 cut(s) | 313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627 |
| BsmBI | CGTCTC | 2 cut(s) | 313, 3627 |
| BsmI | GAATGC | 1 cut(s) | 297 |
| BsnI | GGCC | 7 cut(s) | 1008, 1451, 2091, 2313, 2708, 3255, 4144 |
| BsoBI | CYCGRG | 1 cut(s) | 169 |
| Bsp1407I | TGTACA | 1 cut(s) | 2020 |
| BspANI | GGCC | 7 cut(s) | 1008, 1451, 2091, 2313, 2708, 3255, 4144 |
| BspCNI | CTCAG | 2 cut(s) | 2440, 3493 |
| BspHI | TCATGA | 2 cut(s) | 18, 3351 |
| BspLI | GGNNCC | 9 cut(s) | 99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667 |
| BspMAI | CTGCAG | 2 cut(s) | 823, 3208 |
| BspMI | ACCTGC | 1 cut(s) | 3271 |
| BspPI | GGATC | 6 cut(s) | 733, 2281, 2605, 2630, 2643, 2904 |
| BspQI | GCTCTTC | 1 cut(s) | 3425 |
| BspT107I | GGYRCC | 3 cut(s) | 685, 1163, 3665 |
| BsrBI | CCGCTC | 2 cut(s) | 3320, 3946 |
| BsrDI | GCAATG | 5 cut(s) | 678, 742, 1224, 1809, 2649 |
| BsrFI | RCCGGY | 1 cut(s) | 3668 |
| BsrGI | TGTACA | 1 cut(s) | 2020 |
| BsrI | ACTGG | 9 cut(s) | 407, 1009, 1783, 2167, 2206, 2257, 2521, 2566, 4054 |
| BssAI | RCCGGY | 1 cut(s) | 3668 |
| BssECI | CCNNGG | 8 cut(s) | 169, 170, 1047, 1159, 1352, 2703, 3077, 3139 |
| BssNI | GRCGYC | 1 cut(s) | 322 |
| BssSI | CACGAG | 1 cut(s) | 2879 |
| BssT1I | CCWWGG | 3 cut(s) | 1352, 2703, 3139 |
| Bst2BI | CACGAG | 1 cut(s) | 2879 |
| Bst2UI | CCWGG | 5 cut(s) | 1161, 1961, 2133, 2846, 3078 |
| Bst6I | CTCTTC | 4 cut(s) | 758, 1440, 1783, 3425 |
| BstACI | GRCGYC | 1 cut(s) | 322 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 818 |
| BstAUI | TGTACA | 1 cut(s) | 2020 |
| BstDEI | CTNAG | 5 cut(s) | 1175, 1341, 2448, 3288, 3480 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 81, 2721 |
| BstH2I | RGCGCY | 1 cut(s) | 946 |
| BstHHI | GCGC | 4 cut(s) | 297, 945, 1716, 2813 |
| BstMAI | GTCTC | 9 cut(s) | 313, 794, 1326, 1914, 2153, 2532, 2745, 2876, 3627 |
| BstMCI | CGRYCG | 1 cut(s) | 3832 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 818, 1435, 1675, 1937, 1956, 2482, 3038, 3119, 3236 |
| BstNI | CCWGG | 5 cut(s) | 1161, 1961, 2133, 2846, 3078 |
| BstNSI | RCATGY | 5 cut(s) | 138, 1433, 2218, 2527, 2715 |
| BstSCI | CCNGG | 8 cut(s) | 168, 169, 1159, 1451, 1959, 2131, 2844, 3076 |
| BstSFI | CTRYAG | 5 cut(s) | 819, 2601, 3204, 3327, 3375 |
| BstSLI | GKGCMC | 5 cut(s) | 177, 1811, 1978, 2341, 3692 |
| BstV1I | GCAGC | 9 cut(s) | 833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141 |
| BstV2I | GAAGAC | 3 cut(s) | 1278, 2977, 3665 |
| BstX2I | RGATCY | 3 cut(s) | 2273, 2597, 2635 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 832, 925, 4105 |
| BstYI | RGATCY | 3 cut(s) | 2273, 2597, 2635 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3480 |
| BsuI | GTATCC | 6 cut(s) | 176, 1627, 2485, 2513, 3214, 4040 |
| BsuRI | GGCC | 7 cut(s) | 1008, 1451, 2091, 2313, 2708, 3255, 4144 |
| BtgZI | GCGATG | 1 cut(s) | 1428 |
| BtsI | GCAGTG | 2 cut(s) | 1136, 3201 |
| BveI | ACCTGC | 1 cut(s) | 3271 |
| CaiI | CAGNNNCTG | 2 cut(s) | 946, 2447 |
| CciI | TCATGA | 2 cut(s) | 18, 3351 |
| CfoI | GCGC | 4 cut(s) | 297, 945, 1716, 2813 |
| Cfr10I | RCCGGY | 1 cut(s) | 3668 |
| Cfr13I | GGNCC | 6 cut(s) | 97, 110, 1145, 1450, 3145, 4142 |
| Cfr9I | CCCGGG | 1 cut(s) | 169 |
| CseI | GACGC | 1 cut(s) | 3091 |
| CsiI | ACCWGGT | 1 cut(s) | 2131 |
| CspAI | ACCGGT | 1 cut(s) | 3668 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2068, 2103 |
| DdeI | CTNAG | 5 cut(s) | 1175, 1341, 2448, 3288, 3480 |
| DraI | TTTAAA | 2 cut(s) | 46, 1206 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2561, 2942 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2561, 2942 |
| EaeI | YGGCCR | 3 cut(s) | 1006, 2089, 2311 |
| Eam1104I | CTCTTC | 4 cut(s) | 758, 1440, 1783, 3425 |
| EarI | CTCTTC | 4 cut(s) | 758, 1440, 1783, 3425 |
| Ecl136II | GAGCTC | 3 cut(s) | 1846, 2669, 3059 |
| Eco130I | CCWWGG | 3 cut(s) | 1352, 2703, 3139 |
| Eco24I | GRGCYC | 4 cut(s) | 339, 1848, 2671, 3061 |
| Eco32I | GATATC | 2 cut(s) | 3457, 3958 |
| Eco47I | GGWCC | 4 cut(s) | 97, 110, 1145, 3145 |
| Eco53kI | GAGCTC | 3 cut(s) | 1846, 2669, 3059 |
| Eco57I | CTGAAG | 5 cut(s) | 51, 2766, 2999, 3449, 3714 |
| Eco81I | CCTNAGG | 1 cut(s) | 3480 |
| Eco88I | CYCGRG | 1 cut(s) | 169 |
| EcoICRI | GAGCTC | 3 cut(s) | 1846, 2669, 3059 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 81, 2721 |
| EcoO109I | RGGNCCY | 2 cut(s) | 110, 3145 |
| EcoRI | GAATTC | 1 cut(s) | 2587 |
| EcoRII | CCWGG | 5 cut(s) | 1159, 1959, 2131, 2844, 3076 |
| EcoRV | GATATC | 2 cut(s) | 3457, 3958 |
| EcoT14I | CCWWGG | 3 cut(s) | 1352, 2703, 3139 |
| EcoT22I | ATGCAT | 1 cut(s) | 1431 |
| EcoT38I | GRGCYC | 4 cut(s) | 339, 1848, 2671, 3061 |
| ErhI | CCWWGG | 3 cut(s) | 1352, 2703, 3139 |
| Esp3I | CGTCTC | 2 cut(s) | 313, 3627 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4063, 4095 |
| FauI | CCCGC | 3 cut(s) | 110, 1443, 2465 |
| FauNDI | CATATG | 1 cut(s) | 3837 |
| FbaI | TGATCA | 1 cut(s) | 2247 |
| FriOI | GRGCYC | 4 cut(s) | 339, 1848, 2671, 3061 |
| FspAI | RTGCGCAY | 1 cut(s) | 296 |
| FspI | TGCGCA | 1 cut(s) | 296 |
| GlaI | GCGC | 4 cut(s) | 296, 944, 1715, 2812 |
| GsaI | CCCAGC | 3 cut(s) | 470, 1857, 3036 |
| GsuI | CTGGAG | 3 cut(s) | 1800, 2742, 4109 |
| HaeII | RGCGCY | 1 cut(s) | 946 |
| HaeIII | GGCC | 7 cut(s) | 1008, 1451, 2091, 2313, 2708, 3255, 4144 |
| HapII | CCGG | 5 cut(s) | 170, 563, 1453, 3114, 3669 |
| HgaI | GACGC | 1 cut(s) | 3091 |
| HhaI | GCGC | 4 cut(s) | 297, 945, 1716, 2813 |
| Hin1I | GRCGYC | 1 cut(s) | 322 |
| Hin6I | GCGC | 4 cut(s) | 295, 943, 1714, 2811 |
| HinP1I | GCGC | 4 cut(s) | 295, 943, 1714, 2811 |
| HincII | GTYRAC | 2 cut(s) | 1213, 3991 |
| HindII | GTYRAC | 2 cut(s) | 1213, 3991 |
| HindIII | AAGCTT | 1 cut(s) | 1306 |
| HpaI | GTTAAC | 1 cut(s) | 1213 |
| HpaII | CCGG | 5 cut(s) | 170, 563, 1453, 3114, 3669 |
| HphI | GGTGA | 5 cut(s) | 1014, 1259, 3503, 3610, 3884 |
| Hpy166II | GTNNAC | 7 cut(s) | 238, 1213, 2177, 2339, 3191, 3979, 3991 |
| Hpy8I | GTNNAC | 7 cut(s) | 238, 1213, 2177, 2339, 3191, 3979, 3991 |
| Hpy99I | CGWCG | 2 cut(s) | 1820, 2337 |
| HpyCH4IV | ACGT | 6 cut(s) | 322, 1096, 1281, 1547, 3132, 4117 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 818, 1435, 1675, 1937, 1956, 2482, 3038, 3119, 3236 |
| HpyF3I | CTNAG | 5 cut(s) | 1175, 1341, 2448, 3288, 3480 |
| HpySE526I | ACGT | 6 cut(s) | 322, 1096, 1281, 1547, 3132, 4117 |
| Hsp92I | GRCGYC | 1 cut(s) | 322 |
| HspAI | GCGC | 4 cut(s) | 295, 943, 1714, 2811 |
| KflI | GGGWCCC | 1 cut(s) | 3145 |
| Ksp22I | TGATCA | 1 cut(s) | 2247 |
| KspAI | GTTAAC | 1 cut(s) | 1213 |
| LguI | GCTCTTC | 1 cut(s) | 3425 |
| LmnI | GCTCC | 9 cut(s) | 334, 422, 2229, 2666, 2674, 3056, 3173, 3540, 4090 |
| Lsp1109I | GCAGC | 9 cut(s) | 833, 952, 1924, 1927, 2386, 2800, 3751, 3754, 4141 |
| MabI | ACCWGGT | 1 cut(s) | 2131 |
| MaeII | ACGT | 6 cut(s) | 322, 1096, 1281, 1547, 3132, 4117 |
| MaeIII | GTNAC | 6 cut(s) | 1247, 1753, 1835, 2030, 2962, 3133 |
| MbiI | CCGCTC | 2 cut(s) | 3320, 3946 |
| MfeI | CAATTG | 2 cut(s) | 2004, 3042 |
| MflI | RGATCY | 3 cut(s) | 2273, 2597, 2635 |
| MlsI | TGGCCA | 2 cut(s) | 2091, 2313 |
| MluNI | TGGCCA | 2 cut(s) | 2091, 2313 |
| MlyI | GAGTC | 4 cut(s) | 551, 1743, 2788, 3780 |
| MmeI | TCCRAC | 4 cut(s) | 30, 817, 1033, 2874 |
| Mox20I | TGGCCA | 2 cut(s) | 2091, 2313 |
| Mph1103I | ATGCAT | 1 cut(s) | 1431 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2984, 3474 |
| MscI | TGGCCA | 2 cut(s) | 2091, 2313 |
| MslI | CAYNNNNRTG | 4 cut(s) | 23, 683, 4022, 4052 |
| Msp20I | TGGCCA | 2 cut(s) | 2091, 2313 |
| MspA1I | CMGCKG | 4 cut(s) | 2510, 2977, 3745, 4132 |
| MspI | CCGG | 5 cut(s) | 170, 563, 1453, 3114, 3669 |
| MspR9I | CCNGG | 8 cut(s) | 170, 171, 1161, 1453, 1961, 2133, 2846, 3078 |
| MunI | CAATTG | 2 cut(s) | 2004, 3042 |
| Mva1269I | GAATGC | 1 cut(s) | 297 |
| MvaI | CCWGG | 5 cut(s) | 1161, 1961, 2133, 2846, 3078 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 818, 1435, 1675, 1937, 1956, 2482, 3038, 3119, 3236 |
| NciI | CCSGG | 3 cut(s) | 170, 171, 1453 |
| NdeI | CATATG | 1 cut(s) | 3837 |
| NlaIV | GGNNCC | 9 cut(s) | 99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667 |
| NmuCI | GTSAC | 2 cut(s) | 1247, 2030 |
| NsbI | TGCGCA | 1 cut(s) | 296 |
| NsiI | ATGCAT | 1 cut(s) | 1431 |
| NspI | RCATGY | 5 cut(s) | 138, 1433, 2218, 2527, 2715 |
| PacI | TTAATTAA | 1 cut(s) | 2064 |
| PaeI | GCATGC | 1 cut(s) | 2218 |
| PagI | TCATGA | 2 cut(s) | 18, 3351 |
| PciI | ACATGT | 2 cut(s) | 2523, 2711 |
| PciSI | GCTCTTC | 1 cut(s) | 3425 |
| PctI | GAATGC | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2984, 3474 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 929, 1508, 2467 |
| PfoI | TCCNGGA | 1 cut(s) | 2844 |
| PinAI | ACCGGT | 1 cut(s) | 3668 |
| Ple19I | CGATCG | 1 cut(s) | 3832 |
| PleI | GAGTC | 4 cut(s) | 550, 1742, 2788, 3779 |
| PpsI | GAGTC | 4 cut(s) | 550, 1742, 2788, 3779 |
| PpuMI | RGGWCCY | 2 cut(s) | 110, 3145 |
| PscI | ACATGT | 2 cut(s) | 2523, 2711 |
| PshBI | ATTAAT | 2 cut(s) | 2060, 3585 |
| PsiI | TTATAA | 1 cut(s) | 434 |
| Psp124BI | GAGCTC | 3 cut(s) | 1848, 2671, 3061 |
| Psp1406I | AACGTT | 1 cut(s) | 3132 |
| Psp5II | RGGWCCY | 2 cut(s) | 110, 3145 |
| Psp6I | CCWGG | 5 cut(s) | 1159, 1959, 2131, 2844, 3076 |
| PspFI | CCCAGC | 3 cut(s) | 466, 1853, 3032 |
| PspGI | CCWGG | 5 cut(s) | 1159, 1959, 2131, 2844, 3076 |
| PspN4I | GGNNCC | 9 cut(s) | 99, 111, 336, 687, 1165, 2637, 3146, 3147, 3667 |
| PspPI | GGNCC | 6 cut(s) | 97, 110, 1145, 1450, 3145, 4142 |
| PspPPI | RGGWCCY | 2 cut(s) | 110, 3145 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 250, 282, 3552, 3584 |
| PstI | CTGCAG | 2 cut(s) | 823, 3208 |
| PstNI | CAGNNNCTG | 2 cut(s) | 946, 2447 |
| PsuI | RGATCY | 3 cut(s) | 2273, 2597, 2635 |
| PvuI | CGATCG | 1 cut(s) | 3832 |
| PvuII | CAGCTG | 3 cut(s) | 2510, 2977, 4132 |
| RseI | CAYNNNNRTG | 4 cut(s) | 23, 683, 4022, 4052 |
| SacI | GAGCTC | 3 cut(s) | 1848, 2671, 3061 |
| SapI | GCTCTTC | 1 cut(s) | 3425 |
| Sau96I | GGNCC | 6 cut(s) | 97, 110, 1145, 1450, 3145, 4142 |
| ScaI | AGTACT | 2 cut(s) | 229, 3210 |
| SchI | GAGTC | 4 cut(s) | 551, 1743, 2788, 3780 |
| ScrFI | CCNGG | 8 cut(s) | 170, 171, 1161, 1453, 1961, 2133, 2846, 3078 |
| SexAI | ACCWGGT | 1 cut(s) | 2131 |
| SfcI | CTRYAG | 5 cut(s) | 819, 2601, 3204, 3327, 3375 |
| SinI | GGWCC | 4 cut(s) | 97, 110, 1145, 3145 |
| SmaI | CCCGGG | 1 cut(s) | 171 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 23, 683, 4022, 4052 |
| SmlI | CTYRAG | 2 cut(s) | 2156, 3212 |
| SmoI | CTYRAG | 2 cut(s) | 2156, 3212 |
| SpeI | ACTAGT | 1 cut(s) | 2171 |
| SphI | GCATGC | 1 cut(s) | 2218 |
| SspI | AATATT | 4 cut(s) | 56, 1080, 1114, 2188 |
| SstI | GAGCTC | 3 cut(s) | 1848, 2671, 3061 |
| StyD4I | CCNGG | 8 cut(s) | 168, 169, 1159, 1451, 1959, 2131, 2844, 3076 |
| StyI | CCWWGG | 3 cut(s) | 1352, 2703, 3139 |
| TaiI | ACGT | 6 cut(s) | 325, 1099, 1284, 1550, 3135, 4120 |
| TaqI | TCGA | 5 cut(s) | 300, 2359, 2991, 3027, 3516 |
| TatI | WGTACW | 7 cut(s) | 227, 870, 1496, 2020, 3188, 3208, 3645 |
| TauI | GCSGC | 3 cut(s) | 90, 2147, 3323 |
| TseFI | GTSAC | 2 cut(s) | 1247, 2030 |
| TseI | GCWGC | 9 cut(s) | 821, 940, 1937, 1940, 2399, 2813, 3742, 3764, 4129 |
| Tsp45I | GTSAC | 2 cut(s) | 1247, 2030 |
| TspGWI | ACGGA | 3 cut(s) | 1772, 1833, 3186 |
| TspMI | CCCGGG | 1 cut(s) | 169 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 929, 1508, 2467 |
| VneI | GTGCAC | 1 cut(s) | 2337 |
| VpaK11BI | GGWCC | 4 cut(s) | 97, 110, 1145, 3145 |
| VspI | ATTAAT | 2 cut(s) | 2060, 3585 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 81, 2721 |
| XceI | RCATGY | 5 cut(s) | 138, 1433, 2218, 2527, 2715 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1677, 2321, 2954 |
| XmaI | CCCGGG | 1 cut(s) | 169 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2984, 3474 |
| ZraI | GACGTC | 1 cut(s) | 323 |
| ZrmI | AGTACT | 2 cut(s) | 229, 3210 |
| Zsp2I | ATGCAT | 1 cut(s) | 1431 |